BAC Information

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BAC

Clone NameB6Ng01-216P17
Chromosome6 (Build37)
Map Location 20,731,269 - 20,902,931
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040838
Downstream geneKcnd2, LOC100041343, Tspan12, LOC100041358, Ing3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216P17.bB6Ng01-216P17.g
ACCGA033523GA033524
length1,0091,034
definitionB6Ng01-216P17.b B6Ng01-216P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,731,269 - 20,732,280)(20,902,343 - 20,902,931)
sequence
gaattcagaaacccaagaaacttcaggtaatatgagctactgaaccaatt
ctctggatcaataagagcgaatgatagaaacaacaaacgctcttcttcct
aaaaggcaaaagattgcttgaaaataagggttcattattgtgaggagaca
ccatgaccaaagcaactctcatagaggcaaacatttaattggggatggct
tacagtttcagaggattggtccattatctttatggtaggaagcatggcta
tgtgcagacagacatgagggtagaggagttgagagttcttcatcttaaac
caaaagcagccaggagactgtcttccgcaggcagctaggaggagggtctg
ggtccactggtcagatgtaagcatatatatgagccataaaagcccctcct
ccttagtaattgggtaaattcaggatgtcatattccttttcgcaaaacaa
aagcatcagaactattatcaaccaaaagcatgtgattatcaaagaagatt
tgtttagagagcattaggtgcattattaagtggctagataacataagtct
tatcacctgcagagatatggtacaagttgcttcctatgtaattcatgcaa
aattttgccagatgggtattggaagttcaagtggaagctttgacaaacat
tttagaatacatgttctgagttcaatttcattgtcaagtcagctctaagt
gcttgtatttatgtaaccagtagaaaacagatatattttagctagaatac
aattgattttaaattaatatcaaaactttatttttttaaatatttttatg
acctattttcctcaattacatttccaatgctaacccaaaagtcccccata
ccctcccccccccccacttccctacccacccactcccacttttggccctg
gcgttcccctgtactggggcatataagttgcagatcaatggggctctctt
tcagtgatgcctgattaggcatcttttgatacatatgcagctagagtcca
ggagctcca

gaattcagttcaatttagatcagccactgtgtgcaaaagcagttgaagcc
agagaacaaggaggcagaagacaagaacaaattgctagagttagtttgag
gccaagcagagcaatacattaaaaagccaagagaagccattttgaatcag
tcagcttgaataggagttttgagtcagaacaactgagttgagctagtgct
agcctgacagaattcagaaagaacaagaaaaagtgagcttatttagaagc
aagcatctaagaagacaatttcatctgacaaatgagagttacttttatat
ctggcacccaatatgattgaaagagaagaagaaagcctatcaatgttgca
gaaggcagaggaaatctgatggaaaatttgcagaatacaggagacaaccc
acagaaagcctctgatgagaaattagcctgtcacctgttaccataggaag
catcagtttttctagacatccagagactctagagactccaacatagcagt
accctcaagccaagatcaaggaatgacacagaagcctcagacagagaatc
agagttagccactacaagacaattttcatatttagatagactcttctggc
attaaaaatgggaaactccatttcagatctcttgagagcaagagtaggag
tttaggggatggaaatgttatttgaaaaaaaaaaaaaatcagagcgtctg
caataccacgccctgccgtggatgggcagcaccggaacagctctcgacat
gaaaaggccatgcagaaagtacatccggaagataaaatagaaaaggatgc
tgaagatggaaaggaaacaacaatgtcattaattaaatgcatttttaggg
cccaagtgagattctgagaaatttgagattgagagatgttatttttttgg
tgccacttccctcattgtctgaggaccaagaagccaaattgatgaatgga
tcttctgctgggaccccatttgtctgatcctaataaagtcaggatcatgt
ttactcctaaaaaccaacaaaccaaacccaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_20731269_20732280
seq2: B6Ng01-216P17.b_47_1054

seq1  GAATTCAGAAACCCAAGAAACTTCAGGTAATATGAGCTACTGAACCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAACCCAAGAAACTTCAGGTAATATGAGCTACTGAACCAATT  50

seq1  CTCTGGATCAATAAGAGCGAATGATAGAAACAACAAACGCTCTTCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATCAATAAGAGCGAATGATAGAAACAACAAACGCTCTTCTTCCT  100

seq1  AAAAGGCAAAAGATTGCTTGAAAATAAGGGTTCATTATTGTGAGGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAAAAGATTGCTTGAAAATAAGGGTTCATTATTGTGAGGAGACA  150

seq1  CCATGACCAAAGCAACTCTCATAGAGGCAAACATTTAATTGGGGATGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCAAAGCAACTCTCATAGAGGCAAACATTTAATTGGGGATGGCT  200

seq1  TACAGTTTCAGAGGATTGGTCCATTATCTTTATGGTAGGAAGCATGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTCAGAGGATTGGTCCATTATCTTTATGGTAGGAAGCATGGCTA  250

seq1  TGTGCAGACAGACATGAGGGTAGAGGAGTTGAGAGTTCTTCATCTTAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGACAGACATGAGGGTAGAGGAGTTGAGAGTTCTTCATCTTAAAC  300

seq1  CAAAAGCAGCCAGGAGACTGTCTTCCGCAGGCAGCTAGGAGGAGGGTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAGCCAGGAGACTGTCTTCCGCAGGCAGCTAGGAGGAGGGTCTG  350

seq1  GGTCCACTGGTCAGATGTAAGCATATATATGAGCCATAAAAGCCCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACTGGTCAGATGTAAGCATATATATGAGCCATAAAAGCCCCTCCT  400

seq1  CCTTAGTAATTGGGTAAATTCAGGATGTCATATTCCTTTTCGCAAAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTAATTGGGTAAATTCAGGATGTCATATTCCTTTTCGCAAAACAA  450

seq1  AAGCATCAGAACTATTATCAACCAAAAGCATGTGATTATCAAAGAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCAGAACTATTATCAACCAAAAGCATGTGATTATCAAAGAAGATT  500

seq1  TGTTTAGAGAGCATTAGGTGCATTATTAAGTGGCTAGATAACATAAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGAGAGCATTAGGTGCATTATTAAGTGGCTAGATAACATAAGTCT  550

seq1  TATCACCTGCAGAGATATGGTACAAGTTGCTTCCTATGTAATTCATGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCTGCAGAGATATGGTACAAGTTGCTTCCTATGTAATTCATGCAA  600

seq1  AATTTTGCCAGATGGGTATTGGAAGTTCAAGTGGAAGCTTTGACAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCCAGATGGGTATTGGAAGTTCAAGTGGAAGCTTTGACAAACAT  650

seq1  TTTAGAATACATGTTCTGAGTTCAATTTCATTGTCAAGTCAGCTCTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATACATGTTCTGAGTTCAATTTCATTGTCAAGTCAGCTCTAAGT  700

seq1  GCTTGTATTTATGTAACCAGTAGAAAACAGATATATTTTAGCTAGAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTATTTATGTAACCAGTAGAAAACAGATATATTTTAGCTAGAATAC  750

seq1  AATTGATTTTAAATTAATATCAAAACTTTATTTTTTTAAATATTTTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTTTAAATTAATATCAAAACTTTATTTTTTTAAATATTTTTATG  800

seq1  ACCTATTTTCCTCAATTACATTTCCAATGCTAACCCAAAAGTCCCCCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTTCCTCAATTACATTTCCAATGCTAACCCAAAAGTCCCCCATA  850

seq1  CCCT-CCCCCCCCCCACTTCCCTACCCACCCACTCCCACTTTTTGGCCCT  899
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCTCCCCCCCCCCCACTTCCCTACCCACCCACTCCCAC-TTTTGGCCCT  899

seq1  GGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTC  949
      |||||||||||||||||||||||||||   |||| ||  ||||||| |||
seq2  GGCGTTCCCCTGTACTGGGGCATATAA--GTTGC-AGATCAATGGGGCTC  946

seq1  TCTTTCCAGTGATGGCTGATTAGGCCATCTTTTGATACATATGCAGCTAG  999
      ||||| |||||||| ||||||||| |||||||||||||||||||||||||
seq2  TCTTT-CAGTGATGCCTGATTAGG-CATCTTTTGATACATATGCAGCTAG  994

seq1  AGT-CAAGAGCTCC  1012
      ||| || |||||||
seq2  AGTCCAGGAGCTCC  1008


seq1: chr6_20902343_20902931
seq2: B6Ng01-216P17.g_502_1097 (reverse)

seq1  CTTT-GGTTTGGTTTGTTTGTTTTTAGGAGT-AACATGATCTTGACTTTA  48
      |||| ||||||||||||| |||||||||||| ||||||||| ||||||||
seq2  CTTTGGGTTTGGTTTGTTGGTTTTTAGGAGTAAACATGATCCTGACTTTA  50

seq1  TTA-GATCAGAACAAATGGGGTTCCAGCAGAAGATCCATTCATCAATTTG  97
      ||| |||||| ||||||||||| |||||||||||||||||||||||||||
seq2  TTAGGATCAG-ACAAATGGGGTCCCAGCAGAAGATCCATTCATCAATTTG  99

seq1  GCTTCTTGGTCCTCAGACAATGAGGGAAGT-GCACCAAAAAA--TACATC  144
      |||||||||||||||||||||||||||||| |||||||||||   |||||
seq2  GCTTCTTGGTCCTCAGACAATGAGGGAAGTGGCACCAAAAAAATAACATC  149

seq1  TCTCAATCTC-AATTTCTCAGAATCTCACTTGGGCCCT-AAAATGCATTT  192
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TCTCAATCTCAAATTTCTCAGAATCTCACTTGGGCCCTAAAAATGCATTT  199

seq1  AATTAATGACATTGTTGTTTCCTTTCCATCTTCAGCATCCTTTTCTATTT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGACATTGTTGTTTCCTTTCCATCTTCAGCATCCTTTTCTATTT  249

seq1  TATCTTCCGGATGTACTTTCTGCATGGCCTTTTCATGTCGAGAGCTGTTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCCGGATGTACTTTCTGCATGGCCTTTTCATGTCGAGAGCTGTTC  299

seq1  CGGTGCTGCCCATCCACGGCAGGGCGTGGTATTGCAGACGCTCTGATTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTGCCCATCCACGGCAGGGCGTGGTATTGCAGACGCTCTGATTTT  349

seq1  TTTTTTTTTTCAAATAACATTTCCATCCCCTAAACTCCTACTCTTGCTCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCAAATAACATTTCCATCCCCTAAACTCCTACTCTTGCTCT  399

seq1  CAAGAGATCTGAAATGGAGTTTCCCATTTTTAATGCCAGAAGAGTCTATC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATCTGAAATGGAGTTTCCCATTTTTAATGCCAGAAGAGTCTATC  449

seq1  TAAATATGAAAATTGTCTTGTAGTGGCTAACTCTGATTCTCTGTCTGAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGAAAATTGTCTTGTAGTGGCTAACTCTGATTCTCTGTCTGAGG  499

seq1  CTTCTGTGTCATTCCTTGATCTTGGCTTGAGGGTACTGCTATGTTGGAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGTCATTCCTTGATCTTGGCTTGAGGGTACTGCTATGTTGGAGT  549

seq1  CTCTAGAGTCTCTGGATGTCTAGAAAAACTGATGCTTCCTATGGTAA  589
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGTCTCTGGATGTCTAGAAAAACTGATGCTTCCTATGGTAA  596


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