BAC Information

Click to search

BAC

Clone NameB6Ng01-217B11
Chromosome6 (Build37)
Map Location 54,619,512 - 54,822,103
singlet/doubletdoublet
Overlap gene2410066E13Rik, Znrf2
Upstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292
Downstream geneNod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217B11.bB6Ng01-217B11.g
ACCGA033604GA033605
length637920
definitionB6Ng01-217B11.b B6Ng01-217B11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,821,471 - 54,822,103)(54,619,512 - 54,620,419)
sequence
gaattccagacttctctacctcaatgcatttgcttgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaatataacaaagaattga
tcatattaatcatgcagctaccattcaactgtactgtaaaaacaatataa
aaataaggtcaacttcaaggaatggctcacagctaaaatcttaagcatgc
aggagggttacacgtgggagccagcttgggccacacagtaatgtagttca
taggttgaaagagcaaacaaaaagactactgaaaaacagagttttttaat
aatttaaaaatcatatgcctggaaatattttggaaatgcacacctggcat
ctccttcaaggaaatgtgaccaaagtgaaatggacttgaatctggaatgg
gaaaattggaacagaaggggagaaaagatgacttccgaagcatatgttca
ttcccaaggtgacctaaaagcaaactcaaaaagccaagtacaaaaaaggt
aagttccttataggctgcaaatagccatacaagccatctaaggaatttat
atatacagaaattacttcctaatcttccaaaattttcaatctattcccca
tttctcttcacatttcacaaaaatgaaaaccaacaaa
gaattccttacatctagctagcaaagacagtcactaggaactttggagaa
tggctgagccaggtggacctcaggagcaagccacatgcttagctcgctct
gtgtatgtgcagaccagccctggatgagacaatcttccctcggggaggtg
ggaaagcagcgggttcggtagagagcatgatccccaagctggtgatgtgc
gtgctgcagcctttcaacctgtgctgaaggttgctgcacaccgcagttcc
cagtcagccctgttctcctgaaggaagaccactggtgtccaggagatgtg
tggctagtccagcctgtgggtgtcttagtgcatctttcttggagttccat
gctctccatttatgatgagtccctgggaggcagctcagttataaaagctg
tctgcagagagaaacagaagagcaatgaccccaaaacacaagatgatgag
ggtgaatctcctgattctgcctgggcttccacccaatgaccttccttcta
agcggcagaatcacggcagcctagcttatgaactgctgcagggactggtc
catctggctactctaagtcgctttgggaaagaaatgtcatcatccctata
tttggatctctcagtatcctcactgccaagaatacacaggtcatgcaaga
ccccgacacaccgtgagtgttgggctctgggctgtgatatttttcccaaa
tttgtttctttaaaaggcttactatgacttatgttgcgattctatatcct
cttgaatacacactctttccaagggtttttgtttgctattttaaaatcct
tgagttctagcccggctgtggtggcgcacaccttttaatctccaacgctt
gagaggcaaaagactggtgaatctctgagtttcacggccagccttgattc
tacatagtgagttccagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_54821471_54822103
seq2: B6Ng01-217B11.b_51_687 (reverse)

seq1  TTTGTTTGTTTTC-TTTTTGTGAAATGTG-AGAGAAATGGGGAATAGATT  48
      |||||| |||||| ||||||||||||||| ||||||||||||||||||||
seq2  TTTGTTGGTTTTCATTTTTGTGAAATGTGAAGAGAAATGGGGAATAGATT  50

seq1  GAAAA-TTTGGAAGATTAGGAAGTAA-TTCTGTATATACTAATTCCTTAG  96
      ||||| |||||||||||||||||||| |||||||||||  ||||||||||
seq2  GAAAATTTTGGAAGATTAGGAAGTAATTTCTGTATATATAAATTCCTTAG  100

seq1  ATGGCTTGTATGGCTATTTGCAGCCTATAAGGAACTTACCTTTTTTGTAC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTATGGCTATTTGCAGCCTATAAGGAACTTACCTTTTTTGTAC  150

seq1  TTGGCTTTTTGAGTTTGCTTTTAGGTCACCTTGGGAATGAACATGTGCTT  196
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGGCTTTTTGAGTTTGCTTTTAGGTCACCTTGGGAATGAACATATGCTT  200

seq1  CGGAAGTCATCTTTTCTCCCCTTCTGTTCCAATTTTCCCATTCCAGATTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTCATCTTTTCTCCCCTTCTGTTCCAATTTTCCCATTCCAGATTC  250

seq1  AAGTCCATTTCACTTTGGTCACATTTCCTTGAAGGAGATGCCAGGTGTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCATTTCACTTTGGTCACATTTCCTTGAAGGAGATGCCAGGTGTGC  300

seq1  ATTTCCAAAATATTTCCAGGCATATGATTTTTAAATTATTAAAAAACTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCAAAATATTTCCAGGCATATGATTTTTAAATTATTAAAAAACTCT  350

seq1  GTTTTTCAGTAGTCTTTTTGTTTGCTCTTTCAACCTATGAACTACATTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAGTAGTCTTTTTGTTTGCTCTTTCAACCTATGAACTACATTAC  400

seq1  TGTGTGGCCCAAGCTGGCTCCCACGTGTAACCCTCCTGCATGCTTAAGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCCCAAGCTGGCTCCCACGTGTAACCCTCCTGCATGCTTAAGAT  450

seq1  TTTAGCTGTGAGCCATTCCTTGAAGTTGACCTTATTTTTATATTGTTTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTGTGAGCCATTCCTTGAAGTTGACCTTATTTTTATATTGTTTTT  500

seq1  ACAGTACAGTTGAATGGTAGCTGCATGATTAATATGATCAATTCTTTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAGTTGAATGGTAGCTGCATGATTAATATGATCAATTCTTTGTT  550

seq1  ATATTTACACACACACACACACACACACACACACACACACACACACACAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACACACACACACACACACACACACACACACACACACACACACAC  600

seq1  ACAAGCAAATGCATTGAGGTAGAGAAGTCTGGAATTC  633
      |||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAATGCATTGAGGTAGAGAAGTCTGGAATTC  637

seq1: chr6_54619512_54620419
seq2: B6Ng01-217B11.g_71_990

seq1  GAATTCCTTACATCTAGCTAGCAAAGACAGTCACTAGGAACTTTGGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTACATCTAGCTAGCAAAGACAGTCACTAGGAACTTTGGAGAA  50

seq1  TGGCTGAGCCAGGTGGACCTCAGGAGCAAGCCACATGCTTAGCTCGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGCCAGGTGGACCTCAGGAGCAAGCCACATGCTTAGCTCGCTCT  100

seq1  GTGTATGTGCAGACCAGCCCTGGATGAGACAATCTTCCCTCGGGGAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGCAGACCAGCCCTGGATGAGACAATCTTCCCTCGGGGAGGTG  150

seq1  GGAAAGCAGCGGGTTCGGTAGAGAGCATGATCCCCAAGCTGGTGATGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGCGGGTTCGGTAGAGAGCATGATCCCCAAGCTGGTGATGTGC  200

seq1  GTGCTGCAGCCTTTCAACCTGTGCTGAAGGTTGCTGCACACCGCAGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCAGCCTTTCAACCTGTGCTGAAGGTTGCTGCACACCGCAGTTCC  250

seq1  CAGTCAGCCCTGTTCTCCTGAAGGAAGACCACTGGTGTCCAGGAGATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCCCTGTTCTCCTGAAGGAAGACCACTGGTGTCCAGGAGATGTG  300

seq1  TGGCTAGTCCAGCCTGTGGGTGTCTTAGTGCATCTTTCTTGGAGTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGTCCAGCCTGTGGGTGTCTTAGTGCATCTTTCTTGGAGTTCCAT  350

seq1  GCTCTCCATTTATGATGAGTCCCTGGGAGGCAGCTCAGTTATAAAAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCATTTATGATGAGTCCCTGGGAGGCAGCTCAGTTATAAAAGCTG  400

seq1  TCTGCAGAGAGAAACAGAAGAGCAATGACCCCAAAACACAAGATGATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGAGAAACAGAAGAGCAATGACCCCAAAACACAAGATGATGAG  450

seq1  GGTGAATCTCCTGATTCTGCCTGGGCTTCCACCCAATGACCTTCCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATCTCCTGATTCTGCCTGGGCTTCCACCCAATGACCTTCCTTCTA  500

seq1  AGCGGCAGAATCACGGCAGCCTAGCTTATGAACTGCTGCAGGGACTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCAGAATCACGGCAGCCTAGCTTATGAACTGCTGCAGGGACTGGTC  550

seq1  CATCTGGCTACTCTAAGTCGCTTTGGGAAAGAAATGTCATCATCCCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGCTACTCTAAGTCGCTTTGGGAAAGAAATGTCATCATCCCTATA  600

seq1  TTTGGATCTCTCAGTATCCTCACTGCCAAGAATACACAGGTCATGCAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCTCTCAGTATCCTCACTGCCAAGAATACACAGGTCATGCAAGA  650

seq1  CCCCGACACACCGTGAGTGTTGGGCTCTGGGCTGTGATA-TTTTCCCAAA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCCGACACACCGTGAGTGTTGGGCTCTGGGCTGTGATATTTTTCCCAAA  700

seq1  TTTGTTTCTTTAAAAGGCTTACTATGACTTATGTTGCGATTCTATATCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTTAAAAGGCTTACTATGACTTATGTTGCGATTCTATATCCT  750

seq1  C-TGAATACACACTC-TTCCAAGGGTTTTTG-TTGCTATTTTAAAATCC-  795
      | ||||||||||||| ||||||||||||||| ||||||||||||||||| 
seq2  CTTGAATACACACTCTTTCCAAGGGTTTTTGTTTGCTATTTTAAAATCCT  800

seq1  TGAG-TCTAGCCCGGCTGTGGTGGCGCACACC-TTTAATC-CCAACGCTT  842
      |||| ||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TGAGTTCTAGCCCGGCTGTGGTGGCGCACACCTTTTAATCTCCAACGCTT  850

seq1  GAGAGGC-AGAGACTGGTGAATCTCTGAGTTT-AAGGCCAGCC-TGA-TC  888
      ||||||| | |||||||||||||||||||||| | |||||||| ||| ||
seq2  GAGAGGCAAAAGACTGGTGAATCTCTGAGTTTCACGGCCAGCCTTGATTC  900

seq1  TACATAGTGAGTTCCAGGGT  908
      ||||||||||||||||||||
seq2  TACATAGTGAGTTCCAGGGT  920