BAC Information

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BAC

Clone NameB6Ng01-217J08
Chromosome6 (Build37)
Map Location 118,907,774 - 119,044,753
singlet/doubletdoublet
Overlap geneCacna1c
Upstream geneLOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236, Ninj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217J08.bB6Ng01-217J08.g
ACCGA033952GA033953
length217590
definitionB6Ng01-217J08.b B6Ng01-217J08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,044,537 - 119,044,753)(118,907,774 - 118,908,363)
sequence
ttggtaatcaggcaagtggatttgtgctgcgaaacacttctgagactggt
caaaactaatgtaccacccagccataggctaaaacctccacacaactgta
aaccaatacaaactcaggctggttggttaaggattggttaacttgggcat
ttgttcctggaacagctgcctagccatgggctcattgtgggggtaggatg
ctgtataggggtgtgtg
gaattccttgcactcccattgtttggcctaaagcaatgatcttgggaggg
agcttctctgaccctgtcctcatcctcttgccaatccaaagtcggtaact
tttaattaaaataagttaagttatgtagggcaaccgatttcaagttctca
ggggcaggattctcaagggtagggcattacaaacaggagggacattcact
gctgttctctaggctgcacatcacagattaaaaagcaaacacacagatta
tttcatcgtcataaagactgagagtggcaccaaagagccatttctaacct
ttggtccccggtcgtcagcgagctccttagggctcagctctgtattgtcc
acttctctgtcagggccctggggcctgtcttacctcaaaaggttaaatgc
aaactattcctattaccctcggttccgaccacaggatgtacagcaacgat
caaggctgcagcctggtgatccttccacctggaagccatgagcggtggta
tcatgtgtgcagtttttgcatgctgagaacacatatttgctcagtgacac
aaaagatgtaatttaacagaaagagaggggggtggtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119044537_119044753
seq2: B6Ng01-217J08.b_52_268 (reverse)

seq1  CACACACCCCTATACAGCATCCTACCCCCACAATGAGCCCATGGCTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCCCTATACAGCATCCTACCCCCACAATGAGCCCATGGCTAGGC  50

seq1  AGCTGTTCCAGGAACAAATGCCCAAGTTAACCAATCCTTAACCAACCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCCAGGAACAAATGCCCAAGTTAACCAATCCTTAACCAACCAGC  100

seq1  CTGAGTTTGTATTGGTTTACAGTTGTGTGGAGGTTTTAGCCTATGGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTTGTATTGGTTTACAGTTGTGTGGAGGTTTTAGCCTATGGCTGG  150

seq1  GTGGTACATTAGTTTTGACCAGTCTCAGAAGTGTTTCGCAGCACAAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACATTAGTTTTGACCAGTCTCAGAAGTGTTTCGCAGCACAAATCC  200

seq1  ACTTGCCTGATTACCAA  217
      |||||||||||||||||
seq2  ACTTGCCTGATTACCAA  217

seq1: chr6_118907774_118908363
seq2: B6Ng01-217J08.g_67_656

seq1  GAATTCCTTGCACTCCCATTGTTTGGCCTAAAGCAATGATCTTGGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCACTCCCATTGTTTGGCCTAAAGCAATGATCTTGGGAGGG  50

seq1  AGCTTCTCTGACCCTGTCCTCATCCTCTTGCCAATCCAAAGTCGGTAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCTGACCCTGTCCTCATCCTCTTGCCAATCCAAAGTCGGTAACT  100

seq1  TTTAATTAAAATAAGTTAAGTTATGTAGGGCAACCGATTTCAAGTTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAAATAAGTTAAGTTATGTAGGGCAACCGATTTCAAGTTCTCA  150

seq1  GGGGCAGGATTCTCAAGGGTAGGGCATTACAAACAGGAGGGACATTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGGATTCTCAAGGGTAGGGCATTACAAACAGGAGGGACATTCACT  200

seq1  GCTGTTCTCTAGGCTGCACATCACAGATTAAAAAGCAAACACACAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTCTAGGCTGCACATCACAGATTAAAAAGCAAACACACAGATTA  250

seq1  TTTCATCGTCATAAAGACTGAGAGTGGCACCAAAGAGCCATTTCTAACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCGTCATAAAGACTGAGAGTGGCACCAAAGAGCCATTTCTAACCT  300

seq1  TTGGTCCCCGGTCGTCAGCGAGCTCCTTAGGGCTCAGCTCTGTATTGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCCCGGTCGTCAGCGAGCTCCTTAGGGCTCAGCTCTGTATTGTCC  350

seq1  ACTTCTCTGTCAGGGCCCTGGGGCCTGTCTTACCTCAAAAGGTTAAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGTCAGGGCCCTGGGGCCTGTCTTACCTCAAAAGGTTAAATGC  400

seq1  AAACTATTCCTATTACCCTCGGTTCCGACCACAGGATGTACAGCAACGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTCCTATTACCCTCGGTTCCGACCACAGGATGTACAGCAACGAT  450

seq1  CAAGGCTGCAGCCTGGTGATCCTTCCACCTGGAAGCCATGAGCGGTGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCAGCCTGGTGATCCTTCCACCTGGAAGCCATGAGCGGTGGTA  500

seq1  TCATGTGTGCAGTTTTTGCATGCTGAGAACACATATTTGCTCAGTGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGCAGTTTTTGCATGCTGAGAACACATATTTGCTCAGTGACAC  550

seq1  AAAAGATGTAATTTAACAGAAAGAGAGGGGGGTGGTGTGA  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGTAATTTAACAGAAAGAGAGGGGGGTGGTGTGA  590