BAC Information

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BAC

Clone NameB6Ng01-218C15
Chromosome6 (Build37)
Map Location 80,537,712 - 80,680,362
singlet/doubletdoublet
Overlap geneLOC100043390
Upstream geneLOC100043392, Lrrtm4
Downstream geneLOC100042991
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218C15.bB6Ng01-218C15.g
ACCGA034367GA034368
length1,1041,117
definitionB6Ng01-218C15.b B6Ng01-218C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,679,263 - 80,680,362)(80,537,712 - 80,538,828)
sequence
gaattcaactgtttattggttaaggtaacgtagtttctgaactgaagttt
ggcaaagaaagaaagaaagaaagagagagagagagagagagagagataaa
gaaaggaagaaagaagaaaggaagaaagaagaaaggaagaaaaagaaaga
aagagagaaagaaagagagaaagaaagaataaaggaagaaagaaagaaag
aaagaaagaaagaaagaaaaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaaggaaggaagaaaagtatgataattgc
gaactacagtttagaattagagtctcctgttaaaggtttgccactacaga
tcctgctcacagctatgtctctgaatgtccactcctgaagtttttattgt
gccctagtaatgatatatcaatattgcccagaagttttcctgaggaaatg
tggtttttaatgttagtacattttacacattatttgtctacatttaagcc
caaagcttgattgttcctcttctaataacagactatgttgtcttcacctt
gaaaaactgaaataggattctttagttataagtcaggagccatcagtgtg
gagattgacaatgtgtgctttggccctcttttgggcagagatgtggcaga
gagttgagtgtgattgcattgcagtgaatccaacttactgttatcaatgc
tttgtttaccttttctttcagtcttttttttttttttcggtgttagacaa
tgaacatttgtaatttattttaaaaaatttaaaaatgcaaattctgggtc
tggagcgatggttctgtggctctcttgctgcttgtgtgagtgcatgagga
cctgagttcctaaccctagcaccaagtaaaagtgtttgtgtaactatgta
actcttcacagtgcaccgggacagagacagcaggatctcttggtcagttg
ccataacctcatcagtgagcaccaagctcaccaaggagattctttctcag
aatattgggaaatttagtgaaaactaaactcttagctttcatgtacatgc
accacatggtgcacacattgaacaggcacacaaacttaaatttccaaatc
taac

gaattctagagactctgtgaatggagaatccgaagctaaagaataaataa
atacaggatctcaggatctagtgtctatctgactcttattaactccattg
cctctaccctgtctttgtcttgattcttccatgaaactgtgtaattaatt
gtaactcaactctgcaacttccattcatagaatattggcataataacttc
actttcagtaaaatcagcatattccatcaccaaatagaaatctaattaca
ttctatggctccaggctgtgaagctcaactttatataacttttgacagaa
catacgtgaagattgtgtgaaatggcttcaggctctttttctttagttag
aaatcagaagtttcttaatacaaccaatcatttcttgggggttattaagc
taatagtaataattattctaggttactaatagtatttgtgtgatatgcca
caaatattgctgaatttatataactactcatgaatcaaaagtttacttgt
agactagggtccaagccaatttgattatcagttttgtagaagtcatcaga
gaacagtggaggagtttttaaacttaatttcttttccttttttttgtgta
tgtgtgtgactatccatggttatgtgtgaacatgtatgtatgtgagtcct
gagtttgatatcaggcatctttttcaattgctaatctccaactcagaaag
agaaagtgtatctcactgaactctgactgaccaggaactcacatcttcat
aatgcaggatagtctacctcagagattcctctgtcctggcctttcaagaa
ctgaaattataggcatagactgccacaccccatttttacatgcatgatgg
agatttaaattcacatactcattgtgcagcacttttctagcaagcacttg
ctgaaggaaccattttcccagccatggattttttaatagcacaaacaatt
atttctcatcatttaaacagtattcattttctgagtgttagattgagaaa
aagctgtttagaatggtctactatgagttgcctccatttgtcgatgaaca
ctaacaggcaagggaagggaggactttttgttagactcctaggaatttga
aggtctccaccctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_80679263_80680362
seq2: B6Ng01-218C15.b_52_1155 (reverse)

seq1  GTTAGATTT-GAAATTTATGTTTGTGTGCCTGTTC-ATGTGTGCA-CATG  47
      ||||||||| |||||||| |||||||||||||||| ||||||||| ||||
seq2  GTTAGATTTGGAAATTTAAGTTTGTGTGCCTGTTCAATGTGTGCACCATG  50

seq1  T-GTGCATGTACATGAAAGCT-AGAGTTTAGTTTTTCACTAAATTTCCCA  95
      | ||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  TGGTGCATGTACATGAAAGCTAAGAGTTTAG-TTTTCACTAAATTTCCCA  99

seq1  ATATTCTGAGAAAGAATCT-CTTGGTGAGCTTGGTGCTCACTGATGAGGT  144
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATATTCTGAGAAAGAATCTCCTTGGTGAGCTTGGTGCTCACTGATGAGGT  149

seq1  TATGGCAACTGACCAAGAGATCCTGCTGTCTCTGTCCCGGTGCACTGTGA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAACTGACCAAGAGATCCTGCTGTCTCTGTCCCGGTGCACTGTGA  199

seq1  AGAGTTACATAGTTACACAAACACCTTTTACTTGGTGCTAGGGTTAGGAA  244
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAGTTACATAGTTACACAAACA-CTTTTACTTGGTGCTAGGGTTAGGAA  248

seq1  CTCAGGTCCTCATGCACTCACACAAGCAGCAAGAGAGCCACAGAACCATC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTCCTCATGCACTCACACAAGCAGCAAGAGAGCCACAGAACCATC  298

seq1  GCTCCAGACCCAGAATTTGCATTTTTAAATTTTTTAAAATAAATTACAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGACCCAGAATTTGCATTTTTAAATTTTTTAAAATAAATTACAAA  348

seq1  TGTTCATTGTCTAACACCGAAAAAAAAAAAAAAGACTGAAAGAAAAGGTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTGTCTAACACCGAAAAAAAAAAAAAAGACTGAAAGAAAAGGTA  398

seq1  AACAAAGCATTGATAACAGTAAGTTGGATTCACTGCAATGCAATCACACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCATTGATAACAGTAAGTTGGATTCACTGCAATGCAATCACACT  448

seq1  CAACTCTCTGCCACATCTCTGCCCAAAAGAGGGCCAAAGCACACATTGTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTCTGCCACATCTCTGCCCAAAAGAGGGCCAAAGCACACATTGTC  498

seq1  AATCTCCACACTGATGGCTCCTGACTTATAACTAAAGAATCCTATTTCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCACACTGATGGCTCCTGACTTATAACTAAAGAATCCTATTTCAG  548

seq1  TTTTTCAAGGTGAAGACAACATAGTCTGTTATTAGAAGAGGAACAATCAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGGTGAAGACAACATAGTCTGTTATTAGAAGAGGAACAATCAA  598

seq1  GCTTTGGGCTTAAATGTAGACAAATAATGTGTAAAATGTACTAACATTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGCTTAAATGTAGACAAATAATGTGTAAAATGTACTAACATTAA  648

seq1  AAACCACATTTCCTCAGGAAAACTTCTGGGCAATATTGATATATCATTAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACATTTCCTCAGGAAAACTTCTGGGCAATATTGATATATCATTAC  698

seq1  TAGGGCACAATAAAAACTTCAGGAGTGGACATTCAGAGACATAGCTGTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCACAATAAAAACTTCAGGAGTGGACATTCAGAGACATAGCTGTGA  748

seq1  GCAGGATCTGTAGTGGCAAACCTTTAACAGGAGACTCTAATTCTAAACTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCTGTAGTGGCAAACCTTTAACAGGAGACTCTAATTCTAAACTG  798

seq1  TAGTTCGCAATTATCATACTTTTCTTCCTTCCTTTCTTTCTTTCTTTCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCGCAATTATCATACTTTTCTTCCTTCCTTTCTTTCTTTCTTTCTT  848

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTTCTTTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTTTCTTTCT  898

seq1  TTCTTTCTTTCTTTCTTTCTTCCTTTATTCTTTCTTTCTCTCTTTCTTTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTCCTTTATTCTTTCTTTCTCTCTTTCTTTC  948

seq1  TCTCTTTCTTTCTTTTTCTTCCTTTCTTCTTTCTTCCTTTCTTCTTTCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTTCTTTTTCTTCCTTTCTTCTTTCTTCCTTTCTTCTTTCTT  998

seq1  CCTTTCTTTATCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTATCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTC  1048

seq1  TTTGCCAAACTTCAGTTCAGAAACTACGTTACCTTAACCAATAAACAGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAAACTTCAGTTCAGAAACTACGTTACCTTAACCAATAAACAGTT  1098

seq1  GAATTC  1100
      ||||||
seq2  GAATTC  1104


seq1: chr6_80537712_80538828
seq2: B6Ng01-218C15.g_63_1179

seq1  GAATTCTAGAGACTCTGTGAATGGAGAATCCGAAGCTAAAGAATAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGACTCTGTGAATGGAGAATCCGAAGCTAAAGAATAAATAA  50

seq1  ATACAGGATCTCAGGATCTAGTGTCTATCTGACTCTTATTAACTCCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGATCTCAGGATCTAGTGTCTATCTGACTCTTATTAACTCCATTG  100

seq1  CCTCTACCCTGTCTTTGTCTTGATTCTTCCATGAAACTGTGTAATTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCCTGTCTTTGTCTTGATTCTTCCATGAAACTGTGTAATTAATT  150

seq1  GTAACTCAACTCTGCAACTTCCATTCATAGAATATTGGCATAATAACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCAACTCTGCAACTTCCATTCATAGAATATTGGCATAATAACTTC  200

seq1  ACTTTCAGTAAAATCAGCATATTCCATCACCAAATAGAAATCTAATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGTAAAATCAGCATATTCCATCACCAAATAGAAATCTAATTACA  250

seq1  TTCTATGGCTCCAGGCTGTGAAGCTCAACTTTATATAACTTTTGACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGCTCCAGGCTGTGAAGCTCAACTTTATATAACTTTTGACAGAA  300

seq1  CATACGTGAAGATTGTGTGAAATGGCTTCAGGCTCTTTTTCTTTAGTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGTGAAGATTGTGTGAAATGGCTTCAGGCTCTTTTTCTTTAGTTAG  350

seq1  AAATCAGAAGTTTCTTAATACAACCAATCATTTCTTGGGGGTTATTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAGTTTCTTAATACAACCAATCATTTCTTGGGGGTTATTAAGC  400

seq1  TAATAGTAATAATTATTCTAGGTTACTAATAGTATTTGTGTGATATGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTAATAATTATTCTAGGTTACTAATAGTATTTGTGTGATATGCCA  450

seq1  CAAATATTGCTGAATTTATATAACTACTCATGAATCAAAAGTTTACTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTGCTGAATTTATATAACTACTCATGAATCAAAAGTTTACTTGT  500

seq1  AGACTAGGGTCCAAGCCAATTTGATTATCAGTTTTGTAGAAGTCATCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGGGTCCAAGCCAATTTGATTATCAGTTTTGTAGAAGTCATCAGA  550

seq1  GAACAGTGGAGGAGTTTTTAAACTTAATTTCTTTTCCTTTTTTTTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGGAGGAGTTTTTAAACTTAATTTCTTTTCCTTTTTTTTGTGTA  600

seq1  TGTGTGTGACTATCCATGGTTATGTGTGAACATGTATGTATGTGAGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGACTATCCATGGTTATGTGTGAACATGTATGTATGTGAGTCCT  650

seq1  GAGTTTGATATCAGGCATCTTTTTCAATTGCTAATCTCCAACTCAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGATATCAGGCATCTTTTTCAATTGCTAATCTCCAACTCAGAAAG  700

seq1  AGAAAGTGTATCTCACTGAACTCTGACTGACCAGGAACTCACATCTTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGTATCTCACTGAACTCTGACTGACCAGGAACTCACATCTTCAT  750

seq1  AATGCAGGATAGTCTACCTCAGAGATTCCTCTGTCCTGGCCTTTCAAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGGATAGTCTACCTCAGAGATTCCTCTGTCCTGGCCTTTCAAGAA  800

seq1  CTGAAATTATAGGCATAGACTGCCACACCCCATTTTTACATGCATGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTATAGGCATAGACTGCCACACCCCATTTTTACATGCATGATGG  850

seq1  AGATTTAAATTCACATACTCATTGTGCAGCACTTTTCTAGCAAGCACTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGATTTAAATTCACATACTCATTGTGCAGCACTTTTCTAGCAAGCAC-TT  899

seq1  GCTGAAGGAACCATTTTCCCAGCCATGGATTTTTTTAATAGCACAAACAA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGAAGGAACCATTTTCCCAGCCATGGA-TTTTTTAATAGCACAAACAA  948

seq1  TTATTTCTCATCATTTAAACAGTATTCATTTTCTTGAGTGTTAGATTGAG  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTATTTCTCATCATTTAAACAGTATTCATTTTC-TGAGTGTTAGATTGAG  997

seq1  -AAAAGCTGTTTTAGAATGGTCTACTATGAGTTGCCTCCATTTGTCGATG  1049
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTG-TTTAGAATGGTCTACTATGAGTTGCCTCCATTTGTCGATG  1046

seq1  AACACT-ACAGGCA--GGGAGGGAGGACTTTTTGTTAGACTCCTAGGAAT  1096
      |||||| |||||||  || |||||||||||||||||||||||||||||| 
seq2  AACACTAACAGGCAAGGGAAGGGAGGACTTTTTGTTAGACTCCTAGGAA-  1095

seq1  TTTAAAGGTCT-CACCCTCTTG  1117
      ||| ||||||| ||||||||||
seq2  TTTGAAGGTCTCCACCCTCTTG  1117


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