BAC Information

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BAC

Clone NameB6Ng01-218H12
Chromosome6 (Build37)16 (Build37)
Map Location 40,774,531 - 40,774,7405,134,858 - 5,135,932
singlet/doubletsingletsinglet
Overlap geneEG638904
Upstream geneLOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
Downstream geneMoxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218H12.bB6Ng01-218H12.g
ACCGA034590GA034591
length2491,078
definitionB6Ng01-218H12.b B6Ng01-218H12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(40,774,531 - 40,774,740)(5,134,858 - 5,135,932)
sequence
gaattcacacagtaagggtgaggaggggagagtgtttccaacaggaaaac
agaatgacactcccttaatgggcagattttattcagtcctaaaagaatga
aattctgtcactctcagaaaaagcaggtgaccctggagatgagcctgtta
agtgaaataagccagacatggaaagacaaatactgtgtattctctccctg
tggggtctggatttttaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattccacttggccctcatccacgttctcactccatgttctaagatagt
cagcccagggctggtgcagctgtgtgtgcatgcatgggtacatgtgcacg
tgtgtatgcacatgtgttccacacacagctgtgggcaggcaggatggggc
gggagatctgccctcactcgtacaccctctggggggccagatggggttag
ttcggcactgccaagctgtcttctgccaagtgactcatcccctctgctgt
ggcgggggcggggaggccagcaggaggattgcgtaggtacttgttccagg
atggttgaacatcattgaggcggcacctgcagggctgtgcagtgcccagc
aaccagtgacccttggcctcccatacctgtttctttccaaagctggaatg
agggctctgtttcattgttgcaagggtcacccacaccctctctgtgctca
acatttccccagaagttggagaggaatgtacactccaggctccctcactt
tgaaccagtttgaaacaggaagaacagcattctctcaatccgggaacaga
gggccctgcttacaggaccaggatggaaccttcttctcccagggtggagg
cccagggccattctcttgtgggctagaccctctctcatctcctatatggc
tccacaatcgctcgaggaatcttacttacatacagatccaggaatggtag
catagacctgtcactttcagttgaggctgaggcaggaggattaaaacttc
aaggcctaccttagcgccagagtaagttcaaggctagcccaagtgactta
tcaaggctagcccaagtgacttaataagaccctgtcacctttaacaaaag
gttaaaagagctggggtggagctcagtggtgtttggcttgccaggcacgt
gtgaggccctacgttcaagttcatgtttctttttctgggattgtggctga
attttatcagccaccacactctattcactgagatgggatgtctcatctat
ccaacagccagatggaattgcttttcagagagtagccaccctcttgaagc
tctgagccaatgggtttggggctagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40774531_40774740
seq2: B6Ng01-218H12.b_74_281

seq1  CAGGAAAACAGAATGAAA----CCAAATGAACATAGCTT-CTAGGTACAA  45
      |||||||||||||||| |    |  ||||  || |  ||  |  || | |
seq2  CAGGAAAACAGAATGACACTCCCTTAATGGGCAGATTTTATTCAGTCCTA  50

seq1  CATGGCTTTGAATAAAGGGTTTGGCCTTTCTGGGTTTC-CATGTTTAACT  94
       |       |||| ||           |||||    || ||     | | 
seq2  AA------AGAATGAA----------ATTCTGTCACTCTCAGAAAAAGCA  84

seq1  GGTGTAACAGGAGGATCTCAAATGGCTCTTAGGATTATTCAGATAGCCGT  144
      ||||   | ||||      |   | || ||| |   | | ||  || | |
seq2  GGTGACCCTGGAG------ATGAGCCTGTTAAGTGAAATAAGCCAGACAT  128

seq1  GGACAGCCA-----TGTGGA---------AGTCATCTTTAAACTATAAAA  180
      ||| || ||     |||| |          ||    | |  | | | || 
seq2  GGAAAGACAAATACTGTGTATTCTCTCCCTGTGGGGTCTGGATTTTTAAG  178

seq1  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  210
      ||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  208

seq1: chr16_5134858_5135932
seq2: B6Ng01-218H12.g_65_1142

seq1  GAATTCCACTTGGCCCTCATCCACGTTCTCACTCCATGTTCTAAGATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGGCCCTCATCCACGTTCTCACTCCATGTTCTAAGATAGT  50

seq1  CAGCCCAGGGCTGGTGCAGCTGTGTGTGCATGCATGGGTACATGTGCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAGGGCTGGTGCAGCTGTGTGTGCATGCATGGGTACATGTGCACG  100

seq1  TGTGTATGCACATGTGTTCCACACACAGCTGTGGGCAGGCAGGATGGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGCACATGTGTTCCACACACAGCTGTGGGCAGGCAGGATGGGGC  150

seq1  GGGAGATCTGCCCTCACTCGTACACCCTCTGGGGGGCCAGATGGGGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATCTGCCCTCACTCGTACACCCTCTGGGGGGCCAGATGGGGTTAG  200

seq1  TTCGGCACTGCCAAGCTGTCTTCTGCCAAGTGACTCATCCCCTCTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCACTGCCAAGCTGTCTTCTGCCAAGTGACTCATCCCCTCTGCTGT  250

seq1  GGCGGGGGCGGGGAGGCCAGCAGGAGGATTGCGTAGGTACTTGTTCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGGCGGGGAGGCCAGCAGGAGGATTGCGTAGGTACTTGTTCCAGG  300

seq1  ATGGTTGAACATCATTGAGGCGGCACCTGCAGGGCTGTGCAGTGCCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGAACATCATTGAGGCGGCACCTGCAGGGCTGTGCAGTGCCCAGC  350

seq1  AACCAGTGACCCTTGGCCTCCCATACCTGTTTCTTTCCAAAGCTGGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGACCCTTGGCCTCCCATACCTGTTTCTTTCCAAAGCTGGAATG  400

seq1  AGGGCTCTGTTTCATTGTTGCAAGGGTCACCCACACCCTCTCTGTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTGTTTCATTGTTGCAAGGGTCACCCACACCCTCTCTGTGCTCA  450

seq1  ACATTTCCCCAGAAGTTGGAGAGGAATGTACACTCCAGGCTCCCTCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCCCAGAAGTTGGAGAGGAATGTACACTCCAGGCTCCCTCACTT  500

seq1  TGAACCAGTTTGAAACAGGAAGAACAGCATTCTCTCAATCCGGGAACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAGTTTGAAACAGGAAGAACAGCATTCTCTCAATCCGGGAACAGA  550

seq1  GGGCCCTGCTTACAGGACCAGGATGGAACCTTCTTCTCCCAGGGTGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCTGCTTACAGGACCAGGATGGAACCTTCTTCTCCCAGGGTGGAGG  600

seq1  CCCAGGGCCATTCTCTTGTGGGCTAGACCCTCTCTCATCTCCTATATGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCATTCTCTTGTGGGCTAGACCCTCTCTCATCTCCTATATGGC  650

seq1  TCCACAATCGCTCGAGGAATCTTACTTACATACAGATCCAGGAATGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAATCGCTCGAGGAATCTTACTTACATACAGATCCAGGAATGGTAG  700

seq1  CATAGACCTGTCAC-TTCAGTTGAGGCTGAGGCAGGAGGATTAAAACTTC  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATAGACCTGTCACTTTCAGTTGAGGCTGAGGCAGGAGGATTAAAACTTC  750

seq1  AAGGCCTACCTTAGCGCCAGAGTAAGTTCAAGGCTAGCCCAAGTGACTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTACCTTAGCGCCAGAGTAAGTTCAAGGCTAGCCCAAGTGACTTA  800

seq1  TCAAGGCTAGCCCAAGTGACTTAATAAGACCCTGTCACCTTTAACAAAA-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAAGGCTAGCCCAAGTGACTTAATAAGACCCTGTCACCTTTAACAAAAG  850

seq1  GTTAAAAGAGCTGGGGTGGAGCTCAGTGGTGTTTGGCTTGCCAGGCACGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGAGCTGGGGTGGAGCTCAGTGGTGTTTGGCTTGCCAGGCACGT  900

seq1  GTGAGGCCCTACGTTCAAGTTCATGTTTCTTTTCCTGGGATTGTGGCTGA  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGAGGCCCTACGTTCAAGTTCATGTTTCTTTTTCTGGGATTGTGGCTGA  950

seq1  ATTTTATCAG-CACCACACTCTATCCACTGAGATGGAATGTCTCATCTAT  997
      |||||||||| ||||||||||||| ||||||||||| |||||||||||||
seq2  ATTTTATCAGCCACCACACTCTATTCACTGAGATGGGATGTCTCATCTAT  1000

seq1  CCAACAGCCAGATGGAAATGCTTTTCAGAGAGTAGCCACCCTC-TGGAGC  1046
      ||||||||||||||||| ||||||||||||||||||||||||| || |||
seq2  CCAACAGCCAGATGGAATTGCTTTTCAGAGAGTAGCCACCCTCTTGAAGC  1050

seq1  TCTGAAGCAAAGGGGTTTGGGGCTAGCTG  1075
      |||| ||| || |||||||||||||||||
seq2  TCTG-AGCCAATGGGTTTGGGGCTAGCTG  1078