BAC Information

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BAC

Clone NameB6Ng01-218H14
Chromosome6 (Build37)6 (Build37)
Map Location 71,950,563 - 71,951,49571,941,514 - 71,942,423
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4
Downstream geneLOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218H14.bB6Ng01-218H14.g
ACCGA034594GA034595
length9331,187
definitionB6Ng01-218H14.b B6Ng01-218H14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,950,563 - 71,951,495)(71,941,514 - 71,942,423)
sequence
gaattcagttcttcatgcttgcctaggaagctctttatcagcaaacctct
ccccagcccctaacatgctgtttttaatccattagagcatatgaccagtg
ttttctttctcttcttctttttttatgagcagctgtgttttgaagttttt
agataagctttaagcattttatttttgtggtcagcattctggaggagctg
acctgtttcaggactgactcgacacgtaagccccgttatcaacgatcaag
ccccgttcaggttgcaagtgcacatagaattctatttcccagatatggtc
gtgctttccagtatgttctcaatgcttctatatacacaatgtacacttaa
gagatgacaaacatactgtaggctctgtgtgtgtgtgtgtatcccatggg
ttgatgtgataggcatgtgtctgcagatgcacgcatgtgtgtgtactttc
tcatactattctgaatgttaccacttgctgtgttaggagatccgcttttt
tcattccactccacctaggctgtcttttcagttcaggtctataacatgag
caaacatctctccccccccctttcttctctctctctctctctctctctct
ctctctctctctctctctctctctctcactctctctctctctcccctctc
ctctctccctccctccttccctccctctattcttgtgtgtgagtgtgtga
tgtaaatatacatgtgtgggtccacgtgtatataggcacaggtgtgagat
ggcctgagttgatgctggtgtcttccttgcttgctctccatcatatattt
taggaggatctttcaggtaaagccagagcttgcatattggctaggctagt
cagtatgttcttattgtctctgcttctggaataaccaggtagccactccc
cacctggcatgtatggttgattcagtagaccgg
cttttttcctcacaggagccttctgcacctcaacctgccgtgtctgcttg
gaggatcctcggaatgttggacgagagtgtctttatgaatgcctttaagg
ttccctatgctgttctggtccagggtgccttttccttatccatggacact
ctcgcttgtgggtgctttttgaacgaggcctctcattcctgcccttacat
tctgcctttgtgcccgcgggttgctccccctgcttgggtcatggatgacc
ctctgaaactttccaccctgaaaaactttcttctcccattgtcttgctca
tgtgccctggaccctgcctggaaatattctttccataaaaggatactctt
caaggaaaaaaatgagggactatttgcctaaatattagattggggtatgc
caaaaattttgataattcttacctggttacaagaaaataactcaaaaact
tttcaagacccttgcgatggaaagtacgttgcatattcctgaggttttgt
aacttacaaatagtctcccacttctctaaacttggcaccaacacctgcag
ttcctgtggctgagtcagcggagggagagctgatttattggctcaggttt
ggagaaggtacagaaaaagggcatttctcagctttctatcccctccagga
caggaagatcagagggctggatgcttcagccctagcctcaagaatccctc
ctgggaacatgcccccccccacaacacacacacacacacacacacacaca
cacacacacacacacacacacacacacagagcttcacccttgtctgcaga
ggaggaaggatagtggggaggctcccattcgatgcctgccaccccacagc
atggtaccagggaattttgccaggggccagagagcaaggctccctcctac
ccactgtcttttctatcgcaggggagaggctggacccaaagccacccaca
caatgtgaccattgacattttgtgggtgccatggaaacatctcttgggag
ctgagtcctccctcagtaaactcattgtcccttgagcaagccttttctcc
aagagcttcccccttctagccctttccaaacccagggctcctctttgtga
ctcaagtaggggagccagaaccaggttgctggtgacagctcacttgcctg
gggtctgtcatctgggctctgtccattctcattacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_71950563_71951495
seq2: B6Ng01-218H14.b_47_979 (reverse)

seq1  CCGGTCTACAGAATCTA-CATACATGCCAGGTGGGGAGTTGGCTACCT-G  48
      ||||||||| ||||| | |||||||||||||||||||| ||||||||| |
seq2  CCGGTCTACTGAATCAACCATACATGCCAGGTGGGGAG-TGGCTACCTGG  49

seq1  TAATTCCAAAAGCAGAGACACT-AGAACAAACTGGCTAGCCTAGCCAATA  97
      | |||||| ||||||||||| | |||||| |||| |||||||||||||||
seq2  TTATTCCAGAAGCAGAGACAATAAGAACATACTGACTAGCCTAGCCAATA  99

seq1  TGCAAGCTCTGGCTTTACCTGAAAGATCCTGCCTTAAAATATATGATGGA  147
      ||||||||||||||||||||||||||||||  | ||||||||||||||||
seq2  TGCAAGCTCTGGCTTTACCTGAAAGATCCT--CCTAAAATATATGATGGA  147

seq1  GAGCAAGCAAGGAAGACACCAGCATCAACTCAGGCCCTCTCACACCTGTG  197
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGCAAGCAAGGAAGACACCAGCATCAACTCAGGCCATCTCACACCTGTG  197

seq1  CCTATATACACGTGGACCCACACATGTATATTTACATCACACACTCACAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATACACGTGGACCCACACATGTATATTTACATCACACACTCACAC  247

seq1  ACAAGAATAGAGGGAGGGAAGGAGGGAGGGAGAGAGGAGAGGGGAGAGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATAGAGGGAGGGAAGGAGGGAGGGAGAGAGGAGAGGGGAGAGAG  297

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  347
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  347

seq1  AGAGAGAGAGAAGAAAGGGGGGGGGAGAGATGTTTGCTCATGTTATAGAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAGAAAGGGGGGGGGAGAGATGTTTGCTCATGTTATAGAC  397

seq1  CTGAACTGAAAAGACAGCCTAGGTGGAGTGGAATGAAAAAAGCGGATCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGAAAAGACAGCCTAGGTGGAGTGGAATGAAAAAAGCGGATCTC  447

seq1  CTAACACAGCAAGTGGTAACATTCAGAATAGTATGAGAAAGTACACACAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAGCAAGTGGTAACATTCAGAATAGTATGAGAAAGTACACACAC  497

seq1  ATGCGTGCATCTGCAGACACATGCCTATCACATCAACCCATGGGATACAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGCATCTGCAGACACATGCCTATCACATCAACCCATGGGATACAC  547

seq1  ACACACACACAGAGCCTACAGTATGTTTGTCATCTCTTAAGTGTACATTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGAGCCTACAGTATGTTTGTCATCTCTTAAGTGTACATTG  597

seq1  TGTATATAGAAGCATTGAGAACATACTGGAAAGCACGACCATATCTGGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATAGAAGCATTGAGAACATACTGGAAAGCACGACCATATCTGGGA  647

seq1  AATAGAATTCTATGTGCACTTGCAACCTGAACGGGGCTTGATCGTTGATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATTCTATGTGCACTTGCAACCTGAACGGGGCTTGATCGTTGATA  697

seq1  ACGGGGCTTACGTGTCGAGTCAGTCCTGAAACAGGTCAGCTCCTCCAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGCTTACGTGTCGAGTCAGTCCTGAAACAGGTCAGCTCCTCCAGAA  747

seq1  TGCTGACCACAAAAATAAAATGCTTAAAGCTTATCTAAAAACTTCAAAAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCACAAAAATAAAATGCTTAAAGCTTATCTAAAAACTTCAAAAC  797

seq1  ACAGCTGCTCATAAAAAAAGAAGAAGAGAAAGAAAACACTGGTCATATGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGCTCATAAAAAAAGAAGAAGAGAAAGAAAACACTGGTCATATGC  847

seq1  TCTAATGGATTAAAAACAGCATGTTAGGGGCTGGGGAGAGGTTTGCTGAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGATTAAAAACAGCATGTTAGGGGCTGGGGAGAGGTTTGCTGAT  897

seq1  AAAGAGCTTCCTAGGCAAGCATGAAGAACTGAATTC  933
      ||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTTCCTAGGCAAGCATGAAGAACTGAATTC  933

seq1: chr6_71941514_71942423
seq2: B6Ng01-218H14.g_283_1187 (reverse)

seq1  CCGTAATGAGGAATGGACAGGAGCCCAGGATGACAAGACCCAGGGCAGTG  50
      ||||||||| ||||||||| ||||||| |||||| ||||||  ||||   
seq2  CCGTAATGA-GAATGGACA-GAGCCCA-GATGAC-AGACCCCAGGCAAGT  46

seq1  GAGCCTGTCACCAGCAAACCTGGGTCTGGCTCCCCTACCTGAGTCAACAA  100
      ||| ||||||||||| ||||||| |||||||||||||| |||||||  ||
seq2  GAG-CTGTCACCAGC-AACCTGGTTCTGGCTCCCCTACTTGAGTCACAAA  94

seq1  GAGGAGCCCTGGGTTGGGAAAGGGCTAAGAAGGGGG-AGCTCTTGGAG-A  148
      ||||||||||||||| |||||||||| ||||||||| ||||||||||| |
seq2  GAGGAGCCCTGGGTTTGGAAAGGGCT-AGAAGGGGGAAGCTCTTGGAGAA  143

seq1  AAGGCTGGCTCAGGGGACAATGAGTTTACTGAGGGAGGACTCAGCTCCCA  198
      |||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGCTCAAGGGACAATGAGTTTACTGAGGGAGGACTCAGCTCCCA  193

seq1  AGAGATGTTTCCATGGCACCCAC-AAATGTCAATGGTCACATTGTGTGGG  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAGATGTTTCCATGGCACCCACAAAATGTCAATGGTCACATTGTGTGGG  243

seq1  TGGCTTTGGGTCCAGCCTCTCCCCTGCGATAG-AAAGACAGTGGGTAGGA  296
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGCTTTGGGTCCAGCCTCTCCCCTGCGATAGAAAAGACAGTGGGTAGGA  293

seq1  GGGAGCCTTGCTCTCTGGCCCCTGGCAAAATTCCCTGGTACCATGCTGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTTGCTCTCTGGCCCCTGGCAAAATTCCCTGGTACCATGCTGTG  343

seq1  GGGTGGCAGGCATCGAATGGGAGCCTCCCCACTATCCTTCCTCCTCTGCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCAGGCATCGAATGGGAGCCTCCCCACTATCCTTCCTCCTCTGCA  393

seq1  GACAAGGGTGAAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGTGAAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  443

seq1  TGTGTGTGTGTGTGTGTGTGTTGTGGGGGGGGGCATGTTCCCAGGAGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTTGTGGGGGGGGGCATGTTCCCAGGAGGGA  493

seq1  TTCTTGAGGCTAGGGCTGAAGCATCCAGCCCTCTGATCTTCCTGTCCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAGGCTAGGGCTGAAGCATCCAGCCCTCTGATCTTCCTGTCCTGG  543

seq1  AGGGGATAGAAAGCTGAGAAATGCCCTTTTTCTGTACCTTCTCCAAACCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATAGAAAGCTGAGAAATGCCCTTTTTCTGTACCTTCTCCAAACCT  593

seq1  GAGCCAATAAATCAGCTCTCCCTCCGCTGACTCAGCCACAGGAACTGCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATAAATCAGCTCTCCCTCCGCTGACTCAGCCACAGGAACTGCAG  643

seq1  GTGTTGGTGCCAAGTTTAGAGAAGTGGGAGACTATTTGTAAGTTACAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGTGCCAAGTTTAGAGAAGTGGGAGACTATTTGTAAGTTACAAAA  693

seq1  CCTCAGGAATATGCAACGTACTTTTCACCAGAGCAGCATGGT-------A  739
      ||||||||||||||||||||||||   |||  |||  | |||       |
seq2  CCTCAGGAATATGCAACGTACTTT---CCATCGCA--AGGGTCTTGAAAA  738

seq1  GTTACTTAACCTGGTTAACTCTTAACCAGGTAGCTAGCAACAAATGCTGT  789
      |||  ||    |  ||  ||  ||||||||||   |  | ||||   | |
seq2  GTT--TTTGAGTTATTTTCTTGTAACCAGGTAAGAATTATCAAAATTTTT  786

seq1  GACAGCTACCAACCAAACTTTCTGGCAGTGACCTGGCTGAGGGAGGATGC  839
      | ||    |||| | ||  ||  ||||   |  |  || |          
seq2  GGCATACCCCAATCTAATATTTAGGCAAATA-GTCCCTCATTTTTTTCCT  835

seq1  TGAAGAGCTGTGGCC---TGTGGAAAGAGGGCTTCCAGGCAGGGTCCAGG  886
      ||||||   ||  ||   | ||||||||    ||||||||||||||||||
seq2  TGAAGA---GTATCCTTTTATGGAAAGAATATTTCCAGGCAGGGTCCAGG  882

seq1  GCAGTTGAGGCATAGCAATGGGAG  910
      |||  ||| |||   |||||||||
seq2  GCACATGA-GCAAGACAATGGGAG  905