BAC Information

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BAC

Clone NameB6Ng01-219F03
Chromosome6 (Build37)
Map Location 133,326,500 - 133,327,683
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik
Downstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219F03.bB6Ng01-219F03.g
ACCGA035192GA035193
length1,1731,103
definitionB6Ng01-219F03.b B6Ng01-219F03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcagaagatgcaaaagaaggattgaagtaggcagagggcttaa
gaaaatgacccacagaatcaactaaccagggcccatagaggctctcagag
actgacacaacaatatcagacatagcattgttctgcactaagccttctga
atacatagtgaggttgtttagcttgtaggttttgtgggactcctaatagt
ttggtagaaaacttacatgaatagattgttatcactggaagtcctggtct
tttatggagaaaaaaaaaagaaaggaaagcagtgattctggaataaaggg
agctcaaggggtgtaaaaactgggagaaggggacagaatggagactatgg
tctgtatggatttaaagagaataaagtaaagacaaagaacagagaataaa
agaagttgaaggttgtctacagttagaacctgggcttcataggaccctat
caaaactgcaaataataaaaataatttaatctggctggagagatagctca
gtgatgaaagccactgactgcttttccataggttaagttcaaatccaagc
aaccacatgctgacttagaaaccatctgtaatggaatctgataccctctt
ctgatgtactcatatatatgaaatatataaattttaagatatcatatcag
caccaaaaagttaatctatgccatagcatgatatcagaaaatgaatagct
gtaggaaatccttctggagaaatggtcaagaatttttctctctttagtag
atttatttcaagtaagagagaggcatgaagaaagtcatagtaattaaaaa
gaaggaattcaattataagtttttcaaattcacatcaatagaactaagtt
gaaatcaacacatctatcatttatgtacgagttgcataattaaatattga
caagatttttagtaatgttaagaaaagtggaacacttactttagatccaa
aaatcggaacagaaatgcacatggtactagaaaagtacaatctgacagat
gaactatggaatgttacagtgttgaaaactcagtttcgactccatcaata
atcccccccccacacaacacacacaccttctttcaactgggtaaaactcc
aacaaggagaagctgaaatttattattacaatatgattgacctaagactc
caggtagaatcatctgtacaggg
gaattctacgcgtctcgacatttcgctgacgaagggcttctccacctgga
tttcctctgtattttcctactttaaggagtgggtgggggtaggcttgttt
gccgtgatcctatgtggtggagcgttgcttttgctctggatggtctgtaa
acttaaagcccaaacaaaaagggacaagatggtgatagcccaagcacttg
cagcattagaacacagtacctcccctgatatatggttatctatacttaag
caatagatcactggccacttcagctcttgcaccccacgaggctcgtctca
ttgcatgggatagagtgagtgtgcttcagcagcccaagagagttgcacgg
ctaagcactgcagtagaaaggctctgcggcataaaatgagcctattctag
ggagacatgttatcttgtatgaaggttgagtgtccaagtgtccttccccc
tggaataacaacacgggagcggaccaagacccctccaggtgatgagccaa
ggagaaggttttgtgtaatgcccctatttttgcacactggggatttgacc
tctatctccactctcagtactgggtggcctgttgccttttaaataaaaga
aaagggggagatgtgaggagccgcccttgcaatcaccactacaagatggc
gctgataactggtgttctaactggtaaacaagtagtctgctcatgtgctg
gggtatttttccattccttgtgccctgcctgtcccgtggcgtcatctggg
ctgatggtgagcaaccagtcagggtgaaaaaacgtctccaactgctcttg
tggtctattttaaagaccgagtttcctgtgttctgggtctcctccccaga
agctgatcatctttctctcgagatgcatttaaagctattgctgcagaagg
atccgagtgtgtcctgtgtgtatgtcctcgatggcgagactcccttattc
tcacagggacaactagggatggtctttagaaacctcatgtgttcccactg
gtgcacaggatactgtgggggccacaggatttatggaatgtgcccatgac
cagaaaaacagtcctcaccatcagcaaggtgaagaacctattttgcagca
aga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_133326500_133327683
seq2: B6Ng01-219F03.b_44_1216

seq1  GAATTCTTCAGAAGATGCAAAAGAAGGATTGAAGTAGGCAGAGGGCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAAGATGCAAAAGAAGGATTGAAGTAGGCAGAGGGCTTAA  50

seq1  GAAAATGACCCACAGAATCAACTAACCAGGGCCCATAGAGGCTCTCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGACCCACAGAATCAACTAACCAGGGCCCATAGAGGCTCTCAGAG  100

seq1  ACTGACACAACAATATCAGACATAGCATTGTTCTGCACTAAGCCTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACACAACAATATCAGACATAGCATTGTTCTGCACTAAGCCTTCTGA  150

seq1  ATACATAGTGAGGTTGTTTAGCTTGTAGGTTTTGTGGGACTCCTAATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGTGAGGTTGTTTAGCTTGTAGGTTTTGTGGGACTCCTAATAGT  200

seq1  TTGGTAGAAAACTTACATGAATAGATTGTTATCACTGGAAGTCCTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGAAAACTTACATGAATAGATTGTTATCACTGGAAGTCCTGGTCT  250

seq1  TTTATGGAGAAAAAAAAAAGAAAGGAAAGCAGTGATTCTGGAATAAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGAGAAAAAAAAAAGAAAGGAAAGCAGTGATTCTGGAATAAAGGG  300

seq1  AGCTCAAGGGGTGTAAAAACTGGGAGAAGGGGACAGAATGGAGACTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGGGGTGTAAAAACTGGGAGAAGGGGACAGAATGGAGACTATGG  350

seq1  TCTGTATGGATTTAAAGAGAATAAAGTAAAGACAAAGAACAGAGAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGGATTTAAAGAGAATAAAGTAAAGACAAAGAACAGAGAATAAA  400

seq1  AGAAGTTGAAGGTTGTCTACAGTTAGAACCTGGGCTTCATAGGACCCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGAAGGTTGTCTACAGTTAGAACCTGGGCTTCATAGGACCCTAT  450

seq1  CAAAACTGCAAATAATAAAAATAATTTAATCTGGCTGGAGAGATAGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTGCAAATAATAAAAATAATTTAATCTGGCTGGAGAGATAGCTCA  500

seq1  GTGATGAAAGCCACTGACTGCTTTTCCATAGGTTAAGTTCAAATCCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAAGCCACTGACTGCTTTTCCATAGGTTAAGTTCAAATCCAAGC  550

seq1  AACCACATGCTGACTTAGAAACCATCTGTAATGGAATCTGATACCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATGCTGACTTAGAAACCATCTGTAATGGAATCTGATACCCTCTT  600

seq1  CTGATGTACTCATATATATGAAATATATAAATTTTAAGATATCATATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTACTCATATATATGAAATATATAAATTTTAAGATATCATATCAG  650

seq1  CACCAAAAAGTTAATCTATGCCATAGCATGATATCAGAAAATGAATAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAAAGTTAATCTATGCCATAGCATGATATCAGAAAATGAATAGCT  700

seq1  GTAGGAAATCCTTCTGGAGAAATGGTCAAGAATTTTTCTCTCTTTAGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAATCCTTCTGGAGAAATGGTCAAGAATTTTTCTCTCTTTAGTAG  750

seq1  ATTTATTTCAAGTAAGAGAGAGGCATGAAGAAAGTCATAGTAATTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCAAGTAAGAGAGAGGCATGAAGAAAGTCATAGTAATTAAAAA  800

seq1  GAAGGAATTCAATTATAAGTTTTTCAAATTCACATCAATAGAACTAAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATTCAATTATAAGTTTTTCAAATTCACATCAATAGAACTAAGTT  850

seq1  GAAATCAACACATCTATCATTTATGTACGAGTTGCATAATTAAATATTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAACACATCTATCATTTATGTACGAGTTGCATAATTAAATATTGA  900

seq1  CAAGATTTTTAGTAATGTTAAGAAAAGTGGAACACTTACTTTAGATCCAA  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAAGATTTTTAGTAATGTTAAGAAAAGTGGAACACTTACTTTAGATCC-A  949

seq1  AAAATCGGAACAGGAAATGCAACATGGTACTAGAAAAGTACAAATCTGAC  1000
      |||||||||||| ||||||| |||||||||||||||||||| ||||||||
seq2  AAAATCGGAACA-GAAATGC-ACATGGTACTAGAAAAGTAC-AATCTGAC  996

seq1  AGATGAACTATGGAATGTTACAGTGTTGAAAACTCAGGTTTTCGACTCCA  1050
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  AGATGAACTATGGAATGTTACAGTGTTGAAAACTCAG--TTTCGACTCCA  1044

seq1  TCAATAAATCCCCCCCCCACAC-ACACACACACTTTCCTTTAAACTGGGA  1099
      ||||| |||||||||||||||| |||||||||| || |||| ||||||| 
seq2  TCAAT-AATCCCCCCCCCACACAACACACACACCTT-CTTTCAACTGGGT  1092

seq1  AAAAACTCAACAA-GAG-AGTTGAAAATTATATATTACAATATGAATTTG  1147
      ||||   |||||| ||| || ||||| |||| |||||||||||||  |||
seq2  AAAACTCCAACAAGGAGAAGCTGAAATTTAT-TATTACAATATGA--TTG  1139

seq1  AACTAGAGACTCCAGGTAGGATCATCTGGTTACAGGG  1184
      | ||| ||||||||||||| ||||||||  |||||||
seq2  ACCTA-AGACTCCAGGTAGAATCATCTG--TACAGGG  1173