BAC Information

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BAC

Clone NameB6Ng01-219F18
Chromosome6 (Build37)
Map Location 57,209,689 - 57,328,866
singlet/doubletdoublet
Overlap geneLOC100041445, V1r-ps6, V1rc29, V1rc16
Upstream genePde1c, EG666688, Lsm5, 5830411G16Rik, LOC100042288, Kbtbd2, Fkbp9, Nt5c3, LOC100042327, V1rc21, V1rc19, V1rc20, EG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6
Downstream geneV1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219F18.bB6Ng01-219F18.g
ACCGA035218GA035219
length1,075738
definitionB6Ng01-219F18.b B6Ng01-219F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,209,689 - 57,210,781)(57,328,301 - 57,328,866)
sequence
gaattctcctttttactttatcatagaagtgaccttgatgctgaggttat
tcaacagaagcttcagactgatagtgacattgaaagcctcttctttgaaa
ccattttaatctacatccattcatagtttagttaaaaacatagctttaat
tttgtttttaacttaatttaaaatttctcttgatcataagttaatgaaaa
tttatgttttccaatttttacaatagttaccaattagtcctatatgaaac
ttttttatgtttgtttatttgcacttcatttcatttatattaattcaaat
atcagtgattaataaatattgtttatatacagatacatttgtccaatgtg
gtttttgtgaatgtttgtatacttgtgtatatgtccactgacaaagaatg
tgtgttgatatagatactggagccaagagataacattggctcttgttttt
cagaagcaattcacctagagggtgtgtgtctcttctgtacctggagctta
ccaaataggagcccaccacataaggattgtcccatctctgcctctctggt
tctggatatacaggggttcaactatatatcaccatttaataattatgttc
ctcttttattggaaaaaagggtttttttcatacaatatattctgattaag
tttttctgttccccaagtcctcccagttcttccatatctcctctcccatc
tagatcaaaacttcttttgtctctccttatggaacaaaaaggcatctaag
caataataataaagtaaaccccaataatgtaaaacaaaatagacaaacca
gaacagagaaaaacaaacagttgaaaaagagtaaaagaaaaagagccata
aactcatacagacatagaatcacacaagttcaacacagggatcttaaaac
aaacaaacaaaacaaacaaacaaacaaacaaacaacaacagaaaaaaaaa
cgatgtgttgggttaggggaggggctttatctacttctactctagtcact
atcaggcgcaatctgtgcagtcctgtgcatgctgtcagtcttgagttata
tgtgtctgtgctgtgttagacggcc

gaattctatgtagctatatgccccattttttaattgggttatttgggttg
ttggtgtctaatttcttgagttccttatacattttgcagattagtccttc
tcatatatagatctttccaaatatgtagactgccttttcatcctatttac
agtgtcctttgccttacagaagctttgcagtttcatgaggttccattaat
caattgttgatcttagagtctgagccattgttctgttcaggaaattgtct
catgtaccattgtgttcaaagctaatttccaatttcccttctgttagatt
taatgtatttggttttaccttgaggaccttgatacacttgggcttgagtt
ttgtgcagggtgaaaaatatggttctattgcattcattcacatgaagaca
tctagttaaaccagaaccatatattgaagatattttcttttatcaatttt
atgattttggcatctttattaaaagtaaagtctccaaaggtatgtggctt
ttttggggggtatcaataccatgctgttattgtcactattgctctgtagt
agaacctgaggtcaaggatcatgactactccagaacttattttattgatg
accaaatatttttaaaaagcatctttgaggtcactatctgcttacagatc
agatatggtataacaagtacaattggagtcatactcttggtggttgttct
agctctgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_57209689_57210781
seq2: B6Ng01-219F18.b_44_1118

seq1  GAATTCTCCTTTTTACTTTATCATAGAAGTGACCTTGATGCTGAGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTTACTTTATCATAGAAGTGACCTTGATGCTGAGGTTAT  50

seq1  TCAACAGAAGCTTCAGACTGATAGTGACATTGAAAGCCTCTTCTTTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAAGCTTCAGACTGATAGTGACATTGAAAGCCTCTTCTTTGAAA  100

seq1  CCATTTTAATCTACATCCATTCATAGTTTAGTTAAAAACATAGCTTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAATCTACATCCATTCATAGTTTAGTTAAAAACATAGCTTTAAT  150

seq1  TTTGTTTTTAACTTAATTTAAAATTTCTCTTGATCATAAGTTAATGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTAACTTAATTTAAAATTTCTCTTGATCATAAGTTAATGAAAA  200

seq1  TTTATGTTTTCCAATTTTTACAATAGTTACCAATTAGTCCTATATGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTTTCCAATTTTTACAATAGTTACCAATTAGTCCTATATGAAAC  250

seq1  TTTTTTATGTTTGTTTATTTGCACTTCATTTCATTTATATTAATTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATGTTTGTTTATTTGCACTTCATTTCATTTATATTAATTCAAAT  300

seq1  ATCAGTGATTAATAAATATTGTTTATATACAGATACATTTGTCCAATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGATTAATAAATATTGTTTATATACAGATACATTTGTCCAATGTG  350

seq1  GTTTTTGTGAATGTTTGTATACTTGTGTATATGTCCACTGACAAAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTGAATGTTTGTATACTTGTGTATATGTCCACTGACAAAGAATG  400

seq1  TGTGTTGATATAGATACTGGAGCCAAGAGATAACATTGGCTCTTGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGATATAGATACTGGAGCCAAGAGATAACATTGGCTCTTGTTTTT  450

seq1  CAGAAGCAATTCACCTAGAGGGTGTGTGTCTCTTCTGTACCTGGAGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCAATTCACCTAGAGGGTGTGTGTCTCTTCTGTACCTGGAGCTTA  500

seq1  CCAAATAGGAGCCCACCACATAAGGATTGTCCCATCTCTGCCTCTCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGGAGCCCACCACATAAGGATTGTCCCATCTCTGCCTCTCTGGT  550

seq1  TCTGGATATACAGGGGTTCAACTATATATCACCATTTAATAATTATGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATATACAGGGGTTCAACTATATATCACCATTTAATAATTATGTTC  600

seq1  CTCTTTTATTGGAAAAAAGGGTTTTTTTCATACAATATATTCTGATTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTATTGGAAAAAAGGGTTTTTTTCATACAATATATTCTGATTAAG  650

seq1  TTTTTCTGTTCCCCAAGTCCTCCCAGTTCTTCCATATCTCCTCTCCCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTTCCCCAAGTCCTCCCAGTTCTTCCATATCTCCTCTCCCATC  700

seq1  TAGATCAAAACTTCTTTTGTCTCTCCTTATGGAACAAAAAGGCATCTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAAAACTTCTTTTGTCTCTCCTTATGGAACAAAAAGGCATCTAAG  750

seq1  CAATAATAATAAAGTAAACCCCAATAATGTAAAACAAAATAGACAAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATAATAAAGTAAACCCCAATAATGTAAAACAAAATAGACAAACCA  800

seq1  GAACAGAGAAAAACAAACAGTTGAAAAAGAGTAAAAGAAAAAGAGCCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGAAAAACAAACAGTTGAAAAAGAGTAAAAGAAAAAGAGCCATA  850

seq1  AACTCATACAGACATAGAATCACACAAGTTCAACACAGGGATCTTAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATACAGACATAGAATCACACAAGTTCAACACAGGGATCTTAAAAC  900

seq1  AAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAACAA-ACA  949
      |||        ||||||||||||   |||||||   |||||||||| |  
seq2  AAA-------CAAACAAAACAAA--CAAACAAA--CAAACAAACAACAAC  939

seq1  AGAAAAAAAAACAGATAGTGTTTGGGTTA-GGGAGGGGCTTTATCTACTT  998
      |||||||||||| ||| ||| |||||||| ||||||||||||||||||||
seq2  AGAAAAAAAAAC-GAT-GTG-TTGGGTTAGGGGAGGGGCTTTATCTACTT  986

seq1  CTACTCTAGTCACTATCAGGCGCAATCTGTGCAGTCCCTGTGCATGCTGT  1048
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTACTCTAGTCACTATCAGGCGCAATCTGTGCAGT-CCTGTGCATGCTGT  1035

seq1  CAGTCTTTGAGTTTATATGTGTTCTTGTGCTGTGTTTAGACGGCC  1093
      ||||| ||||| ||||||||||   ||||||||| ||||||||||
seq2  CAGTC-TTGAG-TTATATGTGT--CTGTGCTGTG-TTAGACGGCC  1075


seq1: chr6_57328301_57328866
seq2: B6Ng01-219F18.g_239_804 (reverse)

seq1  CACACACACACACACACACACACACACACATCAGAGCTAGAACAACCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATCAGAGCTAGAACAACCACC  50

seq1  AAGAGTATGACTCCAATTGTACTTGTTATACCATATCTGATCTGTAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATGACTCCAATTGTACTTGTTATACCATATCTGATCTGTAAGCA  100

seq1  GATAGTGACCTCAAAGATGCTTTTTAAAAATATTTGGTCATCAATAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGACCTCAAAGATGCTTTTTAAAAATATTTGGTCATCAATAAAAT  150

seq1  AAGTTCTGGAGTAGTCATGATCCTTGACCTCAGGTTCTACTACAGAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTGGAGTAGTCATGATCCTTGACCTCAGGTTCTACTACAGAGCAA  200

seq1  TAGTGACAATAACAGCATGGTATTGATACCCCCCAAAAAAGCCACATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACAATAACAGCATGGTATTGATACCCCCCAAAAAAGCCACATACC  250

seq1  TTTGGAGACTTTACTTTTAATAAAGATGCCAAAATCATAAAATTGATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACTTTACTTTTAATAAAGATGCCAAAATCATAAAATTGATAAA  300

seq1  AGAAAATATCTTCAATATATGGTTCTGGTTTAACTAGATGTCTTCATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATCTTCAATATATGGTTCTGGTTTAACTAGATGTCTTCATGTG  350

seq1  AATGAATGCAATAGAACCATATTTTTCACCCTGCACAAAACTCAAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATGCAATAGAACCATATTTTTCACCCTGCACAAAACTCAAGCCCA  400

seq1  AGTGTATCAAGGTCCTCAAGGTAAAACCAAATACATTAAATCTAACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATCAAGGTCCTCAAGGTAAAACCAAATACATTAAATCTAACAGAA  450

seq1  GGGAAATTGGAAATTAGCTTTGAACACAATGGTACATGAGACAATTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTGGAAATTAGCTTTGAACACAATGGTACATGAGACAATTTCCT  500

seq1  GAACAGAACAATGGCTCAGACTCTAAGATCAACAATTGATTAATGGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACAATGGCTCAGACTCTAAGATCAACAATTGATTAATGGAACC  550

seq1  TCATGAAACTGCAAAG  566
      ||||||||||||||||
seq2  TCATGAAACTGCAAAG  566


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