BAC Information

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BAC

Clone NameB6Ng01-219K17
Chromosome6 (Build37)
Map Location 110,979,816 - 110,980,931
singlet/doubletsinglet
Overlap geneGrm7
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219K17.bB6Ng01-219K17.g
ACCGA035438GA035439
length1,2211,128
definitionB6Ng01-219K17.b B6Ng01-219K17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtttttaatagctgagtagagctccattgtgtaaatgtatc
acattttctgtatccatttctctattgagggatatctgggttctttctag
cttctggctattataaatacggctgctatgaacatagtggagcatgtgtc
ttattacaagttggaacatcttctaggtatatgcccaggagaggcattgt
tggatcctccagtagtactatgcccaattttctggagtaaaaagacactg
atggtcttctgcattactggatcctgcatgatacaatattgactcactag
gcagatgtactcactgttgcaataactgcaagagtgtttatgggaataac
aaactgacttattttatttgatgcctgttccctggaagagaattcaatcc
tgattttgtgtgttcaaagtctatggctaagaaagtgatacacagccttc
ctgcaaaagatttcactaattgaaaccaattaaactttctgttggagaac
aaaaaggaattcccaggcttttacctggtggaggagtacctattagttga
ttgttgttggaggatgtagaatcaatttcatttgggagtatgactaccag
taggttggtcatgcactagggatgatataacacccatggccatatggggt
taactgactaattgaactattttttttaaaaaggagttgaagttagaaga
gagagtattccaggtgaaatgggggttaaatatcaaaacacttcatattc
atgtatgaaattttcaaagattgaacatgttttaaaagaaatgaaaaact
ggtttctggacatacacaggaatgatacttttaatattcattaaagtttc
aaacttcattcccacctagggacattctcagttttgaccagaattcaccg
ccctttctccagttttaaatcttgatatagtggcagtcctaaagccctct
agtttgaatgttattatttttagcatatatttggattactgacaaaggat
atggttttgggaaacataaaataattcaaccaggtaagatgtcctataat
aagcatgtcttcctttaaaagatttttatttcagaagacaattggttcat
tcatttttttccacatgagttacctcacatattgaaagtgcaatggccta
gggctttaaaggacgtctgaacctagcttacagtttgtccactagtaaat
acacattctctctcacgtcgt

gaattctcctcttgacagctgcgaattgttgagagtgttcctctcctgag
acctatgtcggggtgttaagccagtctcactcatccccatccaaaataat
taaggaaaagtatcaccttagacattgtgacacatgtgtggaaaggagag
atctacctacctagccacattgatgcatactcgttttgtcttgaagaatt
ctattctgtgcacttaagatacagtcatcaattctgacatgcatcaacac
tgcactagctatacatactatcaggtggtgatagatcacacagaggtggg
ggggagcactaaagagtgcccagtaaactcattgttgacaccttgttaga
ctaggttgatttaattttttgaagttggtgatctatttgaggtgagtaga
tatttacttgatcatatctcccagaacaagttagcacatccttcgtgatg
cctacagctacttttccttaatataattatcctctcagattattcttttg
cattacctcataaaatacatatacaaactcttatctgatgcatgattcaa
gcccagaatatgtgctctcatttctataaagggactggactgggagtaaa
acacttgaaacagccagcctactgttggtattttggttgttgcctttggt
tgtttagtttttctttctgccctcaaaaaagtgcttgatcaatgcttact
tagagaccatactgagcaggaggcacaagttaggactgatcaacagcaat
tgtgttaaatgatagtttgcaaattatcagcttactgaataagagagatc
cttctcatttaactaaatgatcgcttcaataattcgctatcacagcagtt
tttgattcataagcaatacggagcaccagcttgataaattttcccaaatt
tctcccttccttattcctcatacacgtactcactacctagttagccatat
accccaccacagtggcccatttgcaacaagggataagtctacatttccca
caattgcattcactagaagtctagtatttatgaatagcttttgatagaag
tgtggtattctacagttctagttttcagtgccccttaaaaaaaatctatt
cacctcctttaaatccttccttcttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110979816_110980931
seq2: B6Ng01-219K17.g_70_1197

seq1  GAATTCTCCTCTTGACAGCTGCGAATTGTTGAGAGTGTTCCTCTCCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCTTGACAGCTGCGAATTGTTGAGAGTGTTCCTCTCCTGAG  50

seq1  ACCTATGTCGGGGTGTTAAGCCAGTCTCACTCATCCCCATCCAAAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGTCGGGGTGTTAAGCCAGTCTCACTCATCCCCATCCAAAATAAT  100

seq1  TAAGGAAAAGTATCACCTTAGACATTGTGACACATGTGTGGAAAGGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAAGTATCACCTTAGACATTGTGACACATGTGTGGAAAGGAGAG  150

seq1  ATCTACCTACCTAGCCACATTGATGCATACTCGTTTTGTCTTGAAGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTACCTAGCCACATTGATGCATACTCGTTTTGTCTTGAAGAATT  200

seq1  CTATTCTGTGCACTTAAGATACAGTCATCAATTCTGACATGCATCAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGTGCACTTAAGATACAGTCATCAATTCTGACATGCATCAACAC  250

seq1  TGCACTAGCTATACATACTATCAGGTGGTGATAGATCACACAGAGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTAGCTATACATACTATCAGGTGGTGATAGATCACACAGAGGTGGG  300

seq1  GGGGAGCACTAAAGAGTGCCCAGTAAACTCATTGTTGACACCTTGTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCACTAAAGAGTGCCCAGTAAACTCATTGTTGACACCTTGTTAGA  350

seq1  CTAGGTTGATTTAATTTTTTGAAGTTGGTGATCTATTTGAGGTGAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGATTTAATTTTTTGAAGTTGGTGATCTATTTGAGGTGAGTAGA  400

seq1  TATTTACTTGATCATATCTCCCAGAACAAGTTAGCACATCCTTCGTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTTGATCATATCTCCCAGAACAAGTTAGCACATCCTTCGTGATG  450

seq1  CCTACAGCTACTTTTCCTTAATATAATTATCCTCTCAGATTATTCTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGCTACTTTTCCTTAATATAATTATCCTCTCAGATTATTCTTTTG  500

seq1  CATTACCTCATAAAATACATATACAAACTCTTATCTGATGCATGATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACCTCATAAAATACATATACAAACTCTTATCTGATGCATGATTCAA  550

seq1  GCCCAGAATATGTGCTCTCATTTCTATAAAGGGACTGGACTGGGAGTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAATATGTGCTCTCATTTCTATAAAGGGACTGGACTGGGAGTAAA  600

seq1  ACACTTGAAACAGCCAGCCTACTGTTGGTATTTTGGTTGTTGCCTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGAAACAGCCAGCCTACTGTTGGTATTTTGGTTGTTGCCTTTGGT  650

seq1  TGTTTAGTTTTTCTTTCTGCCCTCAAAAAAGTGCTTGATCAATGCTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGTTTTTCTTTCTGCCCTCAAAAAAGTGCTTGATCAATGCTTACT  700

seq1  TAGAGACCATACTGAGCAGGAGGCACAAGTTAGGACTGATCAACAGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCATACTGAGCAGGAGGCACAAGTTAGGACTGATCAACAGCAAT  750

seq1  TGTGTTAAATGATAGTTTGCAAATTATCAGCTTACTGAATAAGAGAGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAAATGATAGTTTGCAAATTATCAGCTTACTGAATAAGAGAGATC  800

seq1  CTTCTCATTTAACT-AATGATCGCTTCAATAATTCGCTATCACAGCAGTT  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTCTCATTTAACTAAATGATCGCTTCAATAATTCGCTATCACAGCAGTT  850

seq1  TTTGATTCAT-AGCAATACGGAGCACCAGCTTGATAAA-TTTCCCAAATT  897
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TTTGATTCATAAGCAATACGGAGCACCAGCTTGATAAATTTTCCCAAATT  900

seq1  TCTCCC-TCCTTATT-CTCATACACGTACTCACTACCTAGTTAGCAATAT  945
      |||||| |||||||| ||||||||||||||||||||||||||||| ||||
seq2  TCTCCCTTCCTTATTCCTCATACACGTACTCACTACCTAGTTAGCCATAT  950

seq1  ACCCCACCACAGTGGCCCATTTGCAACAAGGGATAAGTCTACA-TTCCCA  994
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACCCCACCACAGTGGCCCATTTGCAACAAGGGATAAGTCTACATTTCCCA  1000

seq1  C-ATTGCATTCACCTAG-AGTCTAGTATTTATG-ATAAGTTTTGATAGAA  1041
      | |||||||||| |||| ||||||||||||||| |||  |||||||||||
seq2  CAATTGCATTCA-CTAGAAGTCTAGTATTTATGAATAGCTTTTGATAGAA  1049

seq1  GTGT-GTATTCTACAGTTCTAG-TTTCAGTGCCCTTAAAAAAAAATCTAT  1089
      |||| ||||||||||||||||| ||||||||||| | |||||||||||||
seq2  GTGTGGTATTCTACAGTTCTAGTTTTCAGTGCCCCTTAAAAAAAATCTAT  1099

seq1  TCACCTC--TTTAATCCTTCCTTCTTGCC  1116
      |||||||  || |||||||||||||||||
seq2  TCACCTCCTTTAAATCCTTCCTTCTTGCC  1128


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