BAC Information

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BAC

Clone NameB6Ng01-219M19
Chromosome6 (Build37)
Map Location 98,805,496 - 98,806,084
singlet/doubletsinglet
Overlap geneLOC665979
Upstream geneLOC100043692, Mitf, Gm765, LOC666019, LOC665963
Downstream geneFoxp1, Eif4e3, Gpr27, Prok2, LOC384466, LOC626503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219M19.bB6Ng01-219M19.g
ACCGA035532GA035533
length1,228589
definitionB6Ng01-219M19.b B6Ng01-219M19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagttctgagccccattttttaatggggttatttgatt
ttccggagtccactttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttagtggtct
ttttgtcttattgacagtgtcttttgccttgcagaagctttgcagtttca
tgagatcccatttgtcaattctcgatcttacagtgcaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgagacttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaattcga
attcttctacatgataacaatcagttgtgccagcaccatttgttgaaaat
gctgtctttcttctactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtacagctttaggtcaggcatggtgattccaccagtggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattcaagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatggagattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaaatttcttttttcagagacttgaagtttttatcat
acagatctttcacagcagatgctggcgaggatgtgagaaagaggaacact
cctccattgtggtgggactgcagcttgtacaaccactctgaaatcagtct
ggtggttcctagaaaaatgggaacaaagtactaccggaagatccagcaat
accttcttctaggcattatattcagaagatgtcccacgggtagaaggaca
acatgcctccactatggtcatagtcaagccctaatttatatgcaggagcc
tgaaagaactcgaatgccctcacaggatgtaacggaatgtgacttcaccc
atgagaatctacctccgctctcatgacg
gaattcatctgtctccactccccagtgctgggattaaggagtccacacca
ccatgcccagcttctgagtgtaaggccagcatttcacagatggggtgatc
tccctagccctcccctgtggttttaagaactccctctgagagatccatag
tgcatttggcacagtctttccaaatagatagagtttagataaaatactgc
aacttcgatagcaaccatgctgagatccactgttcctgcccagactgccg
cacttgcatgtgtcctcctttgtatgtggcgtagacagcgtgtcaaattt
atatgttactagctatttgcattaatcaatctaaagccacagtcaagatc
tccaacagttccaacaccacaaatattttctattttctcataaagcttca
tccttcctcctctgcaactcccaactcctggaatttgtaaccttacttcc
aaatccgacctttgaattcactttttctctttatatacaaaaataaataa
ataaataaataaataatctattcattacttttatttctctctctctctct
ctctctctctctctctctctctctctgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98805496_98806084
seq2: B6Ng01-219M19.g_68_656 (reverse)

seq1  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAAATAAAAGTAATGAATAGATTATTTATTTATTTATTTATTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATAAAAGTAATGAATAGATTATTTATTTATTTATTTATTTATTTT  100

seq1  TGTATATAAAGAGAAAAAGTGAATTCAAAGGTCGGATTTGGAAGTAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATAAAGAGAAAAAGTGAATTCAAAGGTCGGATTTGGAAGTAAGGT  150

seq1  TACAAATTCCAGGAGTTGGGAGTTGCAGAGGAGGAAGGATGAAGCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTCCAGGAGTTGGGAGTTGCAGAGGAGGAAGGATGAAGCTTTAT  200

seq1  GAGAAAATAGAAAATATTTGTGGTGTTGGAACTGTTGGAGATCTTGACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATAGAAAATATTTGTGGTGTTGGAACTGTTGGAGATCTTGACTG  250

seq1  TGGCTTTAGATTGATTAATGCAAATAGCTAGTAACATATAAATTTGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAGATTGATTAATGCAAATAGCTAGTAACATATAAATTTGACAC  300

seq1  GCTGTCTACGCCACATACAAAGGAGGACACATGCAAGTGCGGCAGTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTACGCCACATACAAAGGAGGACACATGCAAGTGCGGCAGTCTGG  350

seq1  GCAGGAACAGTGGATCTCAGCATGGTTGCTATCGAAGTTGCAGTATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACAGTGGATCTCAGCATGGTTGCTATCGAAGTTGCAGTATTTTA  400

seq1  TCTAAACTCTATCTATTTGGAAAGACTGTGCCAAATGCACTATGGATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACTCTATCTATTTGGAAAGACTGTGCCAAATGCACTATGGATCTC  450

seq1  TCAGAGGGAGTTCTTAAAACCACAGGGGAGGGCTAGGGAGATCACCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGAGTTCTTAAAACCACAGGGGAGGGCTAGGGAGATCACCCCAT  500

seq1  CTGTGAAATGCTGGCCTTACACTCAGAAGCTGGGCATGGTGGTGTGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATGCTGGCCTTACACTCAGAAGCTGGGCATGGTGGTGTGGACT  550

seq1  CCTTAATCCCAGCACTGGGGAGTGGAGACAGATGAATTC  589
      |||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCCCAGCACTGGGGAGTGGAGACAGATGAATTC  589