BAC Information

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BAC

Clone NameB6Ng01-220J21
Chromosome6 (Build37)
Map Location 42,853,712 - 42,854,641
singlet/doubletsinglet
Overlap genenone
Upstream geneSval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448
Downstream geneOlfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747, LOC546897, LOC665779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220J21.bB6Ng01-220J21.g
ACCGA036131GA036132
length926857
definitionB6Ng01-220J21.b B6Ng01-220J21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttccacattaaaaactaaaggagagctgggcgtggtggtgcacg
cctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcg
aggccagcctggtctacaaagtgagttccaggacagccaaggctatacag
agaaaccctgtctcgagaaaaaaaaaaaaagtaaaagagaagccgtgaga
tcataaaatgcttaagattgaagagagcttaaagagaattttgaaatgaa
ttcttcacatttgtacaactattcacaagagcttttgctagataactcat
aatgccagagaatattttctcgtattgattttatttctgcaatcattaat
aaacctacctattgattcatttttccctttgggaaaggcaataaacagtt
acttttgcctcttatccaatgtcctttggaatgaaggaagttcatttttc
tatttctttttgtttatattagttctttgagaagttcatgcaatgtattt
gaatcatatctacctggactctccagcttcacccagattgatccctttct
tccctatcttcttaaatttgtatacattttggtagttggtcttgtgcact
gtgtatagagattctgatttttgtgtccccaagtctaattacaatctgaa
catggtattgtcataaatattgaagaacctcctgtatcaatatggtataa
agaatcccccccattatctttggttggtaaattaaaagctgaacagctga
actgggcacagaaggtgggaaggttagctttccaatcctcagccagggga
tccaggggaagagtcagtagaaagatttggccatgagaaaggtgagggta
cagaaaaagaagggccttgagtggaggaaaagaagagcagaagtggagaa
gaagagaacgagggggtaggagaaga
gaattcagcttgtaaggattttatggagtatttttgcatcattgttcata
ggagaagttgctgtgaaattctctttctttgttaagtctgtgtgtggttt
gggtgtcagggtgactgtggcctcataaaatgcgtttgacagtgttcctt
ctgttttactttatggaatagtttgagaagtgttactattaggtcctctt
tgaaaatctggcaaaaactctctggcccacggctttttggttgggagact
cttaatggctatttccttaggggttataagactgtttagatagtttactt
gatcttaatttaagtttggtaagtgatgtctatcaagaaaatcatccctt
tcatttagctttttcagttttctggagtacaggctcttgaagtaagatct
aatgattttttttttaatttcctcagtttctgtagttttgtccatgtttt
catttctgattttgttaatttagatactgcctctctgccttttagttagt
ttggctaagcatttgtctatctttttaattttctcaaaagaccagctctt
gttttattgattgtttgtattgttatctttgtttccaattgattcatttc
agccctgagcttggttatttcctgctgtctattcttctttggtgtgaaag
tttcttcttcgggtataatgttaagttgctagtatgagattgctccaatt
tctttatgaaggcactcagtgctatgaactttcctcttagcacagccttt
cattgtgttataaaaagttctgagtatgatatgtcctttgaattttttct
atttctcatttgacccagtagtcattggagttggtctcagtttcaataag
attatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42853712_42854641
seq2: B6Ng01-220J21.b_51_976 (reverse)

seq1  TCTTCTCCTACCCCCTCCTTCTTCTTCTTCTCCACTTCCTGCTCCTTCTT  50
      ||||||||||||||||| ||| ||||||||||||||| ||||| ||||||
seq2  TCTTCTCCTACCCCCTCGTTC-TCTTCTTCTCCACTT-CTGCT-CTTCTT  47

seq1  TTCCTCCACCTCAAGGCCCTTCTTTTTCTGTACCCTCACCTTTCTCATGG  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCA-CTCAAGGCCCTTCTTTTTCTGTACCCTCACCTTTCTCATGG  96

seq1  CCAAATCTTTCTACCTGACTCTTCCCCTGGATCCCCTGGCTG-GGATTGG  149
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  CCAAATCTTTCTA-CTGACTCTTCCCCTGGATCCCCTGGCTGAGGATTGG  145

seq1  AAAGCTAACCTTCCCACCTTCTGTGCCCAGTTCAGCTGTTCAGCTTTTAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAACCTTCCCACCTTCTGTGCCCAGTTCAGCTGTTCAGCTTTTAA  195

seq1  TTTACCAACCAAAGATAATGGGGGGGATTCTTTATACCATATTGATACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAACCAAAGATAATGGGGGGGATTCTTTATACCATATTGATACAG  245

seq1  GAGGTTCTTCAATATTTATGACAATACCATGTTCAGATTGTAATTAGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTTCAATATTTATGACAATACCATGTTCAGATTGTAATTAGACT  295

seq1  TGGGGACACAAAAATCAGAATCTCTATACACAGTGCACAAGACCAACTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACACAAAAATCAGAATCTCTATACACAGTGCACAAGACCAACTAC  345

seq1  CAAAATGTATACAAATTTAAGAAGATAGGGAAGAAAGGGATCAATCTGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTATACAAATTTAAGAAGATAGGGAAGAAAGGGATCAATCTGGG  395

seq1  TGAAGCTGGAGAGTCCAGGTAGATATGATTCAAATACATTGCATGAACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGGAGAGTCCAGGTAGATATGATTCAAATACATTGCATGAACTT  445

seq1  CTCAAAGAACTAATATAAACAAAAAGAAATAGAAAAATGAACTTCCTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAACTAATATAAACAAAAAGAAATAGAAAAATGAACTTCCTTCA  495

seq1  TTCCAAAGGACATTGGATAAGAGGCAAAAGTAACTGTTTATTGCCTTTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAGGACATTGGATAAGAGGCAAAAGTAACTGTTTATTGCCTTTCC  545

seq1  CAAAGGGAAAAATGAATCAATAGGTAGGTTTATTAATGATTGCAGAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAAAAATGAATCAATAGGTAGGTTTATTAATGATTGCAGAAATA  595

seq1  AAATCAATACGAGAAAATATTCTCTGGCATTATGAGTTATCTAGCAAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATACGAGAAAATATTCTCTGGCATTATGAGTTATCTAGCAAAAG  645

seq1  CTCTTGTGAATAGTTGTACAAATGTGAAGAATTCATTTCAAAATTCTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGAATAGTTGTACAAATGTGAAGAATTCATTTCAAAATTCTCTT  695

seq1  TAAGCTCTCTTCAATCTTAAGCATTTTATGATCTCACGGCTTCTCTTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTCTTCAATCTTAAGCATTTTATGATCTCACGGCTTCTCTTTTA  745

seq1  CTTTTTTTTTTTTTCTCGAGACAGGGTTTCTCTGTATAGCCTTGGCTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTCTCGAGACAGGGTTTCTCTGTATAGCCTTGGCTGTC  795

seq1  CTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCT  845

seq1  GCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACCACCACGCCCAG  895

seq1  CTCTCCTTTAGTTTTTAATGTGGAAGAATTC  930
      |||||||||||||||||||||||||||||||
seq2  CTCTCCTTTAGTTTTTAATGTGGAAGAATTC  926