BAC Information

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BAC

Clone NameB6Ng01-220L02
Chromosome6 (Build37)
Map Location 10,906,460 - 11,067,451
singlet/doubletdoublet
Overlap geneAA545190
Upstream geneLOC330264, LOC100040285, LOC667650
Downstream geneNdufa4, Phf14, LOC100040844, EG625347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220L02.bB6Ng01-220L02.g
ACCGA036187GA036188
length9941,091
definitionB6Ng01-220L02.b B6Ng01-220L02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,066,886 - 11,067,451)(10,906,460 - 10,907,547)
sequence
aattttaaggtcaatgacctttctcttccctacttatcacaaaaagattt
ctacaaatatttcaggaaagctatacattttttctttttatggggggata
ttttgtttattgacattgcaaaagttattctctttcttggtttcccctct
gaaaatcccctattccatccccctccccccacttctgagagtgagtcccc
acctacctacccactctctcccacctcactgccctggcattctgcaacac
tgagaattgagccatcatagaaccaagagctccttctcccactgacaccc
aacaaggccatcctctgctgcatatgaggcaggagccatgggtccctcca
ggtgtactccttggttaatagtttagtccctgggagctcaggggtgtctg
gttagttgatattattgctcttcctatggggttgcaaaccccttcagtct
tttctcttaactcctccattggggaccccatgctcagtccaatggttggc
tgtgagcatccacctctgtatttgtcaggctctgccagagcccctcaatc
ttgacagctacatcagtcttctgtcagcaagcacttcttagcatccacaa
tagtgtctgggtttggtgtttgtatggattcccaggtggggcagtctctg
gatggcctttccttcagtctctgttccacactttgtccccatacttcctt
tagacaggagctattctggtttaaaaatttggagatgattgggtggcatc
ataccccaatggggtctttacctaacttctggatatggcctctacaggtt
ctcccttcctattgttgggcatttcacaatgtcctccccgttggttcctg
ggagcctctttttttcctgggatttgggacttgctggtagctacccccat
ttcaccaccccccatttgtacacacctctgttctaattgctgaccctttg
aatatcattcccatcatctcttcccatacctgatccttcccact

gaattctttgagaatgcaggatttcctaactcttgtatttgattgaaaaa
ttaggtaataatctggttttattgatatgaattccaacgaaataagagaa
cttccatgcctttctcagagaaacgagatattgtagataatcctaaaatt
aaattatatatgttgtaactctcttttatattctgcccaaatcattaatt
taagggaattgctttactttatatcaagtagaaaataatctaacaagaga
cagtatggcaatttccactaggtaatgaaatatctatgtggggccattta
tcataatttatatatgatattactaacagttaaatgtattgagagtaata
tcaaaagttccttacatgaattatgacaattaatatatctacagctataa
aacttagatacctttattaatgaaaacactgagccacacaaaggaattat
ataacttatattatatgagaaactggctccaaaatggatatctacaataa
atggaggtattcagcttttccaaataaacatcagtgtttcatttataatt
tcttcatgagtggtgggctgatagataacaacattctattgaaatgtaca
catattcttcatgtcattcctcccccaggtgccaaaatgggcactggcaa
catctttcctgactcctgggtgtatcctttatccaccagggctgaaaagc
tatagaagctctcctgcagatgaagacaaatcctgccacagtgcacagct
ggtcctcgaaaatattactgttgactagatatttttagtcatttaatttt
tgctctgtaagctgaatttcagcatgctttactgattgacacatcatatt
cttcccatcttttcactctgcccatgattttctttggatatacactacag
gaaatatgtattgttttaaattacatatcatatacacaaaggaaacagag
ggaataaaggggaggtttagctcacaaatatactgctccatttaatacaa
gctaagtttgccagctctcagcttcatactgaaatcacattgtacatatg
ttgctaatcaatagtaatcaatgtaggataaatccacatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_11066886_11067451
seq2: B6Ng01-220L02.b_26_593 (reverse)

seq1  TGCTAAGAAGTGCTTGCTGACAGAAGACTGATGTAGCTGTCAAGATTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAAGTGCTTGCTGACAGAAGACTGATGTAGCTGTCAAGATTGAG  50

seq1  GGGCTCTGGCAGAGCCTGACAAATACAGAGGTGGATGCTCACAGCCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGGCAGAGCCTGACAAATACAGAGGTGGATGCTCACAGCCAACC  100

seq1  ATTGGACTGAGCATGGGGTCCCCAATGGAGGAGTTAAGAGAAAAGACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACTGAGCATGGGGTCCCCAATGGAGGAGTTAAGAGAAAAGACTGA  150

seq1  AGGGGTTTGCAACCCCATAGGAAGAGCAATAATATCAACTAACCAGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTGCAACCCCATAGGAAGAGCAATAATATCAACTAACCAGACAC  200

seq1  CCCTGAGCTCCCAGGGACTAAACTATTAACCAAGGAGTACACCTGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCTCCCAGGGACTAAACTATTAACCAAGGAGTACACCTGGAGGG  250

seq1  ACCCATGGCTCCTGCCTCATATGCAGCAGAGGATGGCCTTGTTGGGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGGCTCCTGCCTCATATGCAGCAGAGGATGGCCTTGTTGGGTGTC  300

seq1  AGTGGGAGAAGGAGCTCTTGGTTCTATGATGGCTCAATTCTCAGTGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGAAGGAGCTCTTGGTTCTATGATGGCTCAATTCTCAGTGTTGC  350

seq1  AGAATGCCAGGGCAGTGAGGTGGGAGAGAGTGGGTAGGTAGGTGGGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCCAGGGCAGTGAGGTGGGAGAGAGTGGGTAGGTAGGTGGGGACT  400

seq1  CACTCTCAGAAGTGGGGGGAGGGGGATGGAATAGGGGATTTTCAGAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCAGAAGTGGGGGGAGGGGGATGGAATAGGGGATTTTCAGAGGGG  450

seq1  AAACCAAGAAAGAGAATAACTTTTGCAATGTCAATAAACAAAATATCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAGAAAGAGAATAACTTTTGCAATGTCAATAAACAAAATATCCCC  500

seq1  CCATAAAAAGAAAAAATGTATAGCTTTCCTGAAATATTTGTAGAAATC-T  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCATAAAAAGAAAAAATGTATAGCTTTCCTGAAATATTTGTAGAAATCTT  550

seq1  TTTGTGATAAG-AGGGAA  566
      ||||||||||| ||||||
seq2  TTTGTGATAAGTAGGGAA  568


seq1: chr6_10906460_10907547
seq2: B6Ng01-220L02.g_65_1155

seq1  GAATTCTTTGAGAATGCAGGATTTCCTAACTCTTGTATTTGATTGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAATGCAGGATTTCCTAACTCTTGTATTTGATTGAAAAA  50

seq1  TTAGGTAATAATCTGGTTTTATTGATATGAATTCCAACGAAATAAGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAATAATCTGGTTTTATTGATATGAATTCCAACGAAATAAGAGAA  100

seq1  CTTCCATGCCTTTCTCAGAGAAACGAGATATTGTAGATAATCCTAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGCCTTTCTCAGAGAAACGAGATATTGTAGATAATCCTAAAATT  150

seq1  AAATTATATATGTTGTAACTCTCTTTTATATTCTGCCCAAATCATTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATATGTTGTAACTCTCTTTTATATTCTGCCCAAATCATTAATT  200

seq1  TAAGGGAATTGCTTTACTTTATATCAAGTAGAAAATAATCTAACAAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAATTGCTTTACTTTATATCAAGTAGAAAATAATCTAACAAGAGA  250

seq1  CAGTATGGCAATTTCCACTAGGTAATGAAATATCTATGTGGGGCCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGGCAATTTCCACTAGGTAATGAAATATCTATGTGGGGCCATTTA  300

seq1  TCATAATTTATATATGATATTACTAACAGTTAAATGTATTGAGAGTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTTATATATGATATTACTAACAGTTAAATGTATTGAGAGTAATA  350

seq1  TCAAAAGTTCCTTACATGAATTATGACAATTAATATATCTACAGCTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTTCCTTACATGAATTATGACAATTAATATATCTACAGCTATAA  400

seq1  AACTTAGATACCTTTATTAATGAAAACACTGAGCCACACAAAGGAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGATACCTTTATTAATGAAAACACTGAGCCACACAAAGGAATTAT  450

seq1  ATAACTTATATTATATGAGAAACTGGCTCCAAAATGGATATCTACAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTATATTATATGAGAAACTGGCTCCAAAATGGATATCTACAATAA  500

seq1  ATGGAGGTATTCAGCTTTTCCAAATAAACATCAGTGTTTCATTTATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTATTCAGCTTTTCCAAATAAACATCAGTGTTTCATTTATAATT  550

seq1  TCTTCATGAGTGGTGGGCTGATAGATAACAACATTCTATTGAAATGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGAGTGGTGGGCTGATAGATAACAACATTCTATTGAAATGTACA  600

seq1  CATATTCTTCATGTCATTCCTCCCCCAGGTGCCAAAATGGGCACTGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTTCATGTCATTCCTCCCCCAGGTGCCAAAATGGGCACTGGCAA  650

seq1  CATCTTTCCTGACTCCTGGGTGTATCCTTTATCCACCAGGGCTGAAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCCTGACTCCTGGGTGTATCCTTTATCCACCAGGGCTGAAAAGC  700

seq1  TATAGAAGCTCTCCTGCAGATGAAGACAAATCCTGCCACAGTGCACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAGCTCTCCTGCAGATGAAGACAAATCCTGCCACAGTGCACAGCT  750

seq1  GGTCCTCGAAAATATTACTGTTGACTAGATATTTTTAGTCATTTAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCGAAAATATTACTGTTGACTAGATATTTTTAGTCATTTAATTTT  800

seq1  TGCTCTGTAAGCTGAATTTCAGCATGCTTTACTGATTGACACATCATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTAAGCTGAATTTCAGCATGCTTTACTGATTGACACATCATATT  850

seq1  CTTCCCATCTTTTCACTCTGCCCATGATTTTCTTTGGATATACACTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCATCTTTTCACTCTGCCCATGATTTTCTTTGGATATACACTACAG  900

seq1  GAAATATGTATTGTTTTAAATTACATATCATATACACAAAGGAAACAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGTATTGTTTTAAATTACATATCATATACACAAAGGAAACAGAG  950

seq1  GGAATAAAGGGGAGGTTTAGCTCACAAATATACTGCTCCATTTAATACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAAGGGGAGGTTTAGCTCACAAATATACTGCTCCATTTAATACAA  1000

seq1  GCTAAAGTTTGCCAGCTCTCAGCTTCAATACTGAAATCACATTGTACATA  1050
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCT-AAGTTTGCCAGCTCTCAGCTTC-ATACTGAAATCACATTGTACATA  1048

seq1  TG-TGCT-ATC-ATAGT-ATCAATGTAGGATAAAT-CACATTA  1088
      || |||| ||| ||||| ||||||||||||||||| |||||||
seq2  TGTTGCTAATCAATAGTAATCAATGTAGGATAAATCCACATTA  1091


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