BAC Information

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BAC

Clone NameB6Ng01-221A11
Chromosome6 (Build37)
Map Location 76,427,061 - 76,471,932
singlet/doubletdoublet
Overlap geneLOC668153, EG668155
Upstream geneEG668145, EG546907, LOC100042952
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221A11.bB6Ng01-221A11.g
ACCGA036435GA036436
length9171,006
definitionB6Ng01-221A11.b B6Ng01-221A11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,471,018 - 76,471,932)(76,427,061 - 76,427,764)
sequence
gaattctccagagtgttttgattcattcttctttcctgtatcttgtctcc
tcatcctctttctgacaatgtagtgagaatgagcgtgtgtagctcatgtt
gtcaggatgccctacctcacaccagctccaaatcaacaaagctaaggact
aaaaatcttcccaataaaacactgaagtaaacaatttcaactgattttaa
gttgtattaaatattttatctcagtgatcaaagtgtgactagtttattct
cctacttgtgtgggtctcccccaattaattgaacatcaacaacaaaaaaa
aaagcttaataagagagaattcttccttcacatagaatgttttcaggtgg
gaatatttagtctatcttgctttggtacttgttgataagttgtactgagt
cttcagagtgcagatttgttatgaatttttagtgtctgtagatatgtgag
tcaatctctcatagtaactgtctttctccttcttccacttttattctctc
ccatattcctttgtccttctatgtacatttctctctaattctctgttatt
tctcttgataacttatactaataccatcatcaatattcatgtctatccca
aatgttctattttatatcaaaatagtgttatgatgggtctcaattagcca
agatatctggcatcctcttctggtctattcaggcagcaggcatgcatgtg
taacatagacatacaagcaggcaaaaactctcatacacatgaaataaaca
taaataaatctttaaaggtgtaaagataagctggggaaaggtgaaaagat
agttcagtagttttgagaactgactgctgctttttcaaagggtctgggtt
catttcctgtacacacaggtcacatataaacaaagagacactttttttgg
gggggggggtgttgaaa

gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggatctggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attctttcgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctgagaagctctgtggctcttgtcaggaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgccgcccagaag
ctctgcgactctcgcccgttccagaaacggctggcactctgtattccaca
cggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcagcctggcagacccccgtgct
ctcaccaggaaggtggccggctgtctggagctgaagatggcgccgcccag
caatattttcatttcttaaaaccagatatatctccatcttaccgtatgta
ttctttccttaagccaaggctatttttttgttactagggaactcgtgtct
cctttgggcttcttagtcataattttttaatgaagattttaaatgagatt
attagaaaaatttgggaaccattttaatggatgtttgagaagaaaaagaa
tagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76471018_76471932
seq2: B6Ng01-221A11.b_46_962 (reverse)

seq1  TTTCAACA--CCCCCCCCCAAAAAAAGTGTCTCTTTGTTTATATGTGACC  48
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACACCCCCCCCCCCAAAAAAAGTGTCTCTTTGTTTATATGTGACC  50

seq1  TGTGTGTACAGGAAATGAACCCAGACCCTTTGAAAAAGCAGCAGTCAGTT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACAGGAAATGAACCCAGACCCTTTGAAAAAGCAGCAGTCAGTT  100

seq1  CTCAAAACTACTGAACTATCTTTTCACCTTTCCCCAGCTTATCTTTACAC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACTACTGAACTATCTTTTCACCTTTCCCCAGCTTATCTTTACAC  150

seq1  CTTTAAAGATTTATTTATGTTTATTTCATGTGTATGAGAGTTTTTGCCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGATTTATTTATGTTTATTTCATGTGTATGAGAGTTTTTGCCTG  200

seq1  CTTGTATGTCTATGTTACACATGCATGCCTGCTGCCTGAATAGACCAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATGTCTATGTTACACATGCATGCCTGCTGCCTGAATAGACCAGAA  250

seq1  GAGGATGCCAGATATCTTGGCTAATTGAGACCCATCATAACACTATTTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGCCAGATATCTTGGCTAATTGAGACCCATCATAACACTATTTTG  300

seq1  ATATAAAATAGAACATTTGGGATAGACATGAATATTGATGATGGTATTAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATAGAACATTTGGGATAGACATGAATATTGATGATGGTATTAG  350

seq1  TATAAGTTATCAAGAGAAATAACAGAGAATTAGAGAGAAATGTACATAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTATCAAGAGAAATAACAGAGAATTAGAGAGAAATGTACATAGA  400

seq1  AGGACAAAGGAATATGGGAGAGAATAAAAGTGGAAGAAGGAGAAAGACAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAGGAATATGGGAGAGAATAAAAGTGGAAGAAGGAGAAAGACAG  450

seq1  TTACTATGAGAGATTGACTCACATATCTACAGACACTAAAAATTCATAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATGAGAGATTGACTCACATATCTACAGACACTAAAAATTCATAAC  500

seq1  AAATCTGCACTCTGAAGACTCAGTACAACTTATCAACAAGTACCAAAGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGCACTCTGAAGACTCAGTACAACTTATCAACAAGTACCAAAGCA  550

seq1  AGATAGACTAAATATTCCCACCTGAAAACATTCTATGTGAAGGAAGAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGACTAAATATTCCCACCTGAAAACATTCTATGTGAAGGAAGAATT  600

seq1  CTCTCTTATTAAGCTTTTTTTTTTGTTGTTGATGTTCAATTAATTGGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTATTAAGCTTTTTTTTTTGTTGTTGATGTTCAATTAATTGGGGG  650

seq1  AGACCCACACAAGTAGGAGAATAAACTAGTCACACTTTGATCACTGAGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCACACAAGTAGGAGAATAAACTAGTCACACTTTGATCACTGAGAT  700

seq1  AAAATATTTAATACAACTTAAAATCAGTTGAAATTGTTTACTTCAGTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTAATACAACTTAAAATCAGTTGAAATTGTTTACTTCAGTGTT  750

seq1  TTATTGGGAAGATTTTTAGTCCTTAGCTTTGTTGATTTGGAGCTGGTGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGGAAGATTTTTAGTCCTTAGCTTTGTTGATTTGGAGCTGGTGTG  800

seq1  AGGTAGGGCATCCTGACAACATGAGCTACACACGCTCATTCTCACTACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGCATCCTGACAACATGAGCTACACACGCTCATTCTCACTACAT  850

seq1  TGTCAGAAAGAGGATGAGGAGACAAGATACAGGAAAGAAGAATGAATCAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAAAGAGGATGAGGAGACAAGATACAGGAAAGAAGAATGAATCAA  900

seq1  AACACTCTGGAGAATTC  915
      |||||||||||||||||
seq2  AACACTCTGGAGAATTC  917


seq1: chr6_76427061_76427764
seq2: B6Ng01-221A11.g_369_1072

seq1  AGTCTCTGTAGGCAAGCTCTCCTCTTTCAGGGAAGGTGTACAGTTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGTAGGCAAGCTCTCCTCTTTCAGGGAAGGTGTACAGTTATCTG  50

seq1  GTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTT  100

seq1  CCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTC  150

seq1  GAAGATGTCGCCGCCTGAGAAGCTCTGTGGCTCTTGTCAGGAAGGAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTCGCCGCCTGAGAAGCTCTGTGGCTCTTGTCAGGAAGGAGGCC  200

seq1  GGCCGTCTGGAGCTGAGGATGGCGCTGCCTCAGAAGCTCTGTGGCTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTCTGGAGCTGAGGATGGCGCTGCCTCAGAAGCTCTGTGGCTCTTG  250

seq1  CCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGCCGCCCAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCGCCGCCCAGAAGC  300

seq1  TCTGCGACTCTCGCCCGTTCCAGAAACGGCTGGCACTCTGTATTCCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGACTCTCGCCCGTTCCAGAAACGGCTGGCACTCTGTATTCCACAC  350

seq1  GGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCGGAGCCAAGAAGGCTC  400

seq1  CCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCTGGCAGACCCCCGTGCT  450
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCGCCGGCGCCTGTGCCACAAACCTCTCA-GCCTGGCAGACCCCCGTGCT  449

seq1  CTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCGCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGGAAGGTGGCCGGCTGTCTGGAGCTGAAGATGGCGCCGCCCAG  499

seq1  CAATATTTTCATTTCTTAAAACCAGATATATCTCCATCTTACCGTATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTTCATTTCTTAAAACCAGATATATCTCCATCTTACCGTATGTA  549

seq1  TTCTTTCCTTAAGCCAAGGCTA-TTTTTTGTTACTAGGGAAACTCGTGTC  599
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  TTCTTTCCTTAAGCCAAGGCTATTTTTTTGTTACTAGGG-AACTCGTGTC  598

seq1  TCCTTTGGGCTTCTTAGTCATTATTTTTTAATGAAAGAATTTTAAAAGAG  649
      ||||||||||||||||||||| |||||||||||||   |||||||| || 
seq2  TCCTTTGGGCTTCTTAGTCATAATTTTTTAATGAA--GATTTTAAATGA-  645

seq1  GATTATAAGAAAAA-TTGGGAACCATTTTAAT-GAAGTTTGAGA--GAAA  695
      |||||| ||||||| ||||||||||||||||| || ||||||||   |||
seq2  GATTATTAGAAAAATTTGGGAACCATTTTAATGGATGTTTGAGAAGAAAA  695

seq1  AGAATAGAG  704
      |||||||||
seq2  AGAATAGAG  704


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