BAC Information

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BAC

Clone NameB6Ng01-221B09
Chromosome6 (Build37)
Map Location 97,250,288 - 97,342,027
singlet/doubletdoublet
Overlap geneFrmd4b
Upstream geneC630007B19Rik, C130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3
Downstream geneLOC641241, LOC100043692, Mitf, Gm765, LOC666019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221B09.bB6Ng01-221B09.g
ACCGA036473GA036474
length1,048643
definitionB6Ng01-221B09.b B6Ng01-221B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,340,997 - 97,342,027)(97,250,288 - 97,250,930)
sequence
gaattcaaaggtttcctagtctgccttaaggcatcatgtaccatttccca
tcctgaatgaggaccaagcactgttcacttccagcctttcatgagcttcc
accttcaggtaatccttcatgcagggtggttgctagtctgcccagtaccc
ccaagccccatcttgcttccctcggggctctgttctacagagtcttttca
gttcagttcttcaatcttccaactccaactcagctcaaggtgtctgctgt
gctccgtcatgctcagagtctggaagcctcagcagtaagtagggacacta
tgagacttggtttgttccaggctcactgtttatgttgccaaattctcaag
tgttttgaaaactgttgagatttgttttggggggcgaggatggacgtttt
cacagaagagaacacattctatctctattgctccgtctcatctggtagct
gacattgtcaaagcagaatctttggctacttctatgaaaacactcaaatg
tcaccaccaccaaaactttactatcaccctctcttttggggttcagaatt
ccctaattgttggctgctgagtcaacacttatacccaaatgcagcatttt
acgaagcaggaaacgtagcctgcagccacacttgttgtcccctcctgtgt
ggagaaacacagtcaccctgggtgacatcactgcctagctgatcacgctc
caacagaatggctttctctgtctttgtttgtgctgctacttattaaagcc
aagaaaaataaaaacaagaatgtaaagcctgccgttttaaactgatagta
tttctcttctgctttatacactaaactctgcttgaagagtgttgtggagc
agaactcttttcggtctgtccctctgtagcttgtcatttgcaaggtcctc
cctctctcaatgggacgtttcttatgccttcttcagagaagtttagaata
ctggtatttagaaatgggatcttggccgggagggtggtggcgcacgccct
tttaattcccagctactttggggaggcagatgcaggcggaatttttct
gaattcttggagaatgaggtactgaacttggtcgctgcccagcaagagtg
aaggagtcattggctaaaatgagtcaaggagcaatgaataaagatgagca
aacgggcaaaggactagcttggcaatctttcacagagggcttggtaggtt
agatgaacaagttcttctcaagacagcattggtagaaatgtgtagtagga
tcctgtgcacactttgtaaaactaagttttataaatgacatgttagaaag
aaacgctgaagtctgagccaatttttctcaacttacagtgaacgctctga
gaaagaaactcactcaggtgcaatgggtgacagcgtcacttccaaaactt
ttattaaagaaagtctgcaaggtgtctagcgtggtgtggacacctttaag
cctggtacttttgagggagaggcaggtggatttctgtgagtttgaggctt
gcttagtctgcgtagtgagttccagactagctagcgttacatcgggagag
cctgtgtatacagaaaggaagtggggtggagaggaaatcccaacttgcaa
aaagccaagcagacatgccagatgggttttgttcccctttgaagacctga
ggcctctgaggccacaggctcatcctatggggggtgggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_97340997_97342027
seq2: B6Ng01-221B09.b_51_1098 (reverse)

seq1  AGAAA---TCCGCCTGCCTCTGCCTCCC--AAGT-GCTGGG-ATTAAA--  41
      |||||   ||||||||| ||||||||||  |||| |||||| ||||||  
seq2  AGAAAAATTCCGCCTGCATCTGCCTCCCCAAAGTAGCTGGGAATTAAAAG  50

seq1  GGCGTGCGCCACCA-CCTCCCGG-CAAGATCCCATTTCTAAATAACAGTA  89
      |||||||||||||| |||||||| |||||||||||||||||||| |||||
seq2  GGCGTGCGCCACCACCCTCCCGGCCAAGATCCCATTTCTAAATACCAGTA  100

seq1  TTCT-AACTTCTCTG-AGAAGGCATAAGAAACGTCCCATTGAGAGA-GGA  136
      |||| |||||||||| |||||||||||||||||||||||||||||| |||
seq2  TTCTAAACTTCTCTGAAGAAGGCATAAGAAACGTCCCATTGAGAGAGGGA  150

seq1  GGACC-TGCAACTGACAGGCTACAGAGGGACAGACCGAAAAGAGTTCTGC  185
      ||||| ||||| ||||| ||||||||||||||||||||||||||||||||
seq2  GGACCTTGCAAATGACAAGCTACAGAGGGACAGACCGAAAAGAGTTCTGC  200

seq1  TCCACAACACTCTTCAAGCAGAGTTTAGTGTATAAAGCAGAAGAGAAATA  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAACACTCTTCAAGCAGAGTTTAGTGTATAAAGCAGAAGAGAAATA  250

seq1  CTATCAGTTTAAAACGGCAGGCTTTACATTCTTGTTTTTATTTTTCTTGG  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAGTTTAAAACGGCAGGCTTTACATTCTTGTTTTTATTTTTCTTGG  300

seq1  CTTTAATAAGTAGCAGCACAAAC-AAGACAGAGAAAGCCATTCTGTTGGA  334
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTTAATAAGTAGCAGCACAAACAAAGACAGAGAAAGCCATTCTGTTGGA  350

seq1  GCGTGATCAGCTAGGCAGTGATGTCACCCAGGGTGACTGTGTTTCTCCAC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGATCAGCTAGGCAGTGATGTCACCCAGGGTGACTGTGTTTCTCCAC  400

seq1  ACAGGAGGGGACAACAAGTGTGGCTGCAGGCTACGTTTCCTGCTTCGT-A  433
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACAGGAGGGGACAACAAGTGTGGCTGCAGGCTACGTTTCCTGCTTCGTAA  450

seq1  AATGCTGCATTTGGGTATAAGTGTTGACTCAGCAGCCAACAATTAGGGAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGCATTTGGGTATAAGTGTTGACTCAGCAGCCAACAATTAGGGAA  500

seq1  TTCTGAACCCCAAAAGAGAGGGTGATAGTAAAGTTTTGGTGGTGGTGACA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACCCCAAAAGAGAGGGTGATAGTAAAGTTTTGGTGGTGGTGACA  550

seq1  TTTGAGTGTTTTCATAGAAGTAGCCAAAGATTCTGCTTTGACAATGTCAG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTGTTTTCATAGAAGTAGCCAAAGATTCTGCTTTGACAATGTCAG  600

seq1  CTACCAGATGAGACGGAGCAATAGAGATAGAATGTGTTCTCTTCTGTGAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGATGAGACGGAGCAATAGAGATAGAATGTGTTCTCTTCTGTGAA  650

seq1  AACGTCCATCCTCGCCCCCCAAAACAAATCTCAACAGTTTTCAAAACACT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCCATCCTCGCCCCCCAAAACAAATCTCAACAGTTTTCAAAACACT  700

seq1  TGAGAATTTGGCAACATAAACAGTGAGCCTGGAACAAACCAAGTCTCATA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTTGGCAACATAAACAGTGAGCCTGGAACAAACCAAGTCTCATA  750

seq1  GTGTCCCTACTTACTGCTGAGGCTTCCAGACTCTGAGCATGACGGAGCAC  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCTACTTACTGCTGAGGCTTCCAGACTCTGAGCATGACGGAGCAC  800

seq1  AGCAGACACCTTGAGCTGAGTTGGAGTTGGAAGATTGAAGAACTGAACTG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACACCTTGAGCTGAGTTGGAGTTGGAAGATTGAAGAACTGAACTG  850

seq1  AAAAGACTCTGTAGAACAGAGCCCCGAGGGAAGCAAGATGGGGCTTGGGG  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTCTGTAGAACAGAGCCCCGAGGGAAGCAAGATGGGGCTTGGGG  900

seq1  GTACTGGGCAGACTAGCAACCACCCTGCATGAAGGATTACCTGAAGGTGG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGGCAGACTAGCAACCACCCTGCATGAAGGATTACCTGAAGGTGG  950

seq1  AAGCTCATGAAAGGCTGGAAGTGAACAGTGCTTGGTCCTCATTCAGGATG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATGAAAGGCTGGAAGTGAACAGTGCTTGGTCCTCATTCAGGATG  1000

seq1  GGAAATGGTACATGATGCCTTAAGGCAGACTAGGAAACCTTTGAATTC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGGTACATGATGCCTTAAGGCAGACTAGGAAACCTTTGAATTC  1048

seq1: chr6_97250288_97250930
seq2: B6Ng01-221B09.g_67_709

seq1  GAATTCTTGGAGAATGAGGTACTGAACTTGGTCGCTGCCCAGCAAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGAGAATGAGGTACTGAACTTGGTCGCTGCCCAGCAAGAGTG  50

seq1  AAGGAGTCATTGGCTAAAATGAGTCAAGGAGCAATGAATAAAGATGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTCATTGGCTAAAATGAGTCAAGGAGCAATGAATAAAGATGAGCA  100

seq1  AACGGGCAAAGGACTAGCTTGGCAATCTTTCACAGAGGGCTTGGTAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGGCAAAGGACTAGCTTGGCAATCTTTCACAGAGGGCTTGGTAGGTT  150

seq1  AGATGAACAAGTTCTTCTCAAGACAGCATTGGTAGAAATGTGTAGTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACAAGTTCTTCTCAAGACAGCATTGGTAGAAATGTGTAGTAGGA  200

seq1  TCCTGTGCACACTTTGTAAAACTAAGTTTTATAAATGACATGTTAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCACACTTTGTAAAACTAAGTTTTATAAATGACATGTTAGAAAG  250

seq1  AAACGCTGAAGTCTGAGCCAATTTTTCTCAACTTACAGTGAACGCTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTGAAGTCTGAGCCAATTTTTCTCAACTTACAGTGAACGCTCTGA  300

seq1  GAAAGAAACTCACTCAGGTGCAATGGGTGACAGCGTCACTTCCAAAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACTCACTCAGGTGCAATGGGTGACAGCGTCACTTCCAAAACTT  350

seq1  TTATTAAAGAAAGTCTGCAAGGTGTCTAGCGTGGTGTGGACACCTTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAGAAAGTCTGCAAGGTGTCTAGCGTGGTGTGGACACCTTTAAG  400

seq1  CCTGGTACTTTTGAGGGAGAGGCAGGTGGATTTCTGTGAGTTTGAGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTACTTTTGAGGGAGAGGCAGGTGGATTTCTGTGAGTTTGAGGCTT  450

seq1  GCTTAGTCTGCGTAGTGAGTTCCAGACTAGCTAGCGTTACATCGGGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTCTGCGTAGTGAGTTCCAGACTAGCTAGCGTTACATCGGGAGAG  500

seq1  CCTGTGTATACAGAAAGGAAGTGGGGTGGAGAGGAAATCCCAACTTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTATACAGAAAGGAAGTGGGGTGGAGAGGAAATCCCAACTTGCAA  550

seq1  AAAGCCAAGCAGACATGCCAGATGGGTTTTGTTCCCCTTTGAAGACCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAGCAGACATGCCAGATGGGTTTTGTTCCCCTTTGAAGACCTGA  600

seq1  GGCCTCTGAGGCCACAGGCTCATCCTATGGGGGGTGGGGGGGT  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGAGGCCACAGGCTCATCCTATGGGGGGTGGGGGGGT  643