BAC Information

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BAC

Clone NameB6Ng01-221F23
Chromosome6 (Build37)
Map Location 93,056,838 - 93,144,422
singlet/doubletdoublet
Overlap geneLOC384461
Upstream geneNr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik
Downstream geneLOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221F23.bB6Ng01-221F23.g
ACCGA036684GA036685
length1,0151,050
definitionB6Ng01-221F23.b B6Ng01-221F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,143,423 - 93,144,422)(93,056,838 - 93,057,861)
sequence
gaattcagttccttatgttcgcctagcaagtgctgtatccaccgagcagt
atcgtgacccctacccatttctctctttgatgtttttgtttgtttgtttg
tttgttttgttctgtttgttttttactctacagatatttcatcagatcac
aatgtgtcccagactgatacattccatgagctggagggtgtttggtgaag
aaactgctgtggcattgagtcatagtgctgatgctgcacggggcgctttt
atgtggattaggctccagtcagaaagaagaaagcaaaaggaaaacaaaac
aaacctgcctcttgccagattcagtcctcctgctcttctcagacaactga
ggttgcccagcctttgtttcccaataggtcctttttggagcatcctagag
catctcaggggacggtcatttattacacgtctactatgtttcatatactg
caaaggcatgttcagagaggagaaattagccacttctctagcaggcagac
ttttggcaaacatttccgaggtaaatcaggatttatttgaagcttaagac
agaggatgtgggctccagatggtacttgtgtgagtataaatttttaagta
aaacagggctgacctcagagtgtaaggagcacgtttttgcaaattattag
accatccgtcactccaggatatttgaataatgccttccataggaaattgg
agggggttatgtgcctggttttgaaggtcttattttctgaaagaatacgc
tcatgaggcattttcttttgatttcagagggtggaccctcagggtatcta
aaaggtgttgctgaaatccttagaaaccttcatgattcccctacaacagc
catgatcaatcactgcatttaaaacattaattaatagaagactatttcca
tgtgtttggttgtagaagcatattaacaatggacagcacatgtgcttctt
ggctcaatcctgcagtgctgatatttcccagacttgctgataattctatt
cgaaaagaagcagtc

gaattctccttctcagtctccatgtgctcagcccacatcttgttttgtat
ttttaagtttcactagactctgacagtacttcaataacaaacaatagcct
ttaggtaagtctttcatcgttgagagaacatcatggttttctttatgcca
tgccttgattaactgccatcttttggtggtggtaaatgaaaccaagttac
cagcaggctgctctgtcttccaggggactgctgatggctttttattagga
agctatgcaacttgaggttctactgaaaaggagaagaggccactggagat
gggaagccacgaaaacgtaagtgacattgcccacccagtgtccccacatt
tcttttatcagcacaatgaaagtttagagacttaacagtgatattgcagt
gttttgtccctgaggccatagtaggaagcagaactcacaactcacaccca
caactatctgcctgtaaattcctgtgggtggggccatatgggtgtgggat
ctggaggtcagagaataaagctaaattttggtcttccacttgcactttat
ttgcagcaggtctcactactgcatacagtaggccatacttcaaactttcc
acctccctgcttcccataagagcacatggattactgtgtttagctttggt
gtagcgtctagggatctaaatggagatctacacagctgtgtggcaagtga
ttttacacacccaaacggtctcccaagctcctttctataaattcttacat
tcccttcccagatggcacaggagatttggcaatggcagaacaggtccttt
ggagcatagacaaccccaaggcttgatctttctgttgattaacttcagtt
tcctaaacacttttcattaattaaagaattgagttaaatgctgatgaagg
taacctggccacgtaagttcaccacagggtcctacttgatgttggctcgg
tggttcttcttgcaagtggaaatgttggagtggtggctctgaggcaccat
tttgcttcttttcttttcaggaatgaagttgggactattggcagtccctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_93143423_93144422
seq2: B6Ng01-221F23.b_44_1058 (reverse)

seq1  GACTGCCTC-TTTCAAATAGAA-TATCAGCAAGTCTGGG-AATATCAGCA  47
      |||||| || |||| ||||||| |||||||||||||||| ||||||||||
seq2  GACTGCTTCTTTTCGAATAGAATTATCAGCAAGTCTGGGAAATATCAGCA  50

seq1  CTCCAGG-CTGAGCCA--GAGCAC-TGTGCTGTCCATTGTAAATATGCTT  93
      || ||||  |||||||   ||||| ||||||||||||||| |||||||||
seq2  CTGCAGGATTGAGCCAAGAAGCACATGTGCTGTCCATTGTTAATATGCTT  100

seq1  CTACA--CCAACACATGGAAATAGTCTTCTATTTATTTATTGTTTTAATG  141
      |||||  | |||||||||||||||||||||||| ||| ||  ||| ||||
seq2  CTACAACCAAACACATGGAAATAGTCTTCTATTAATTAATGTTTTAAATG  150

seq1  CAGTGATTGATCATGGCTGTTGTA-GGGAATCATG-AGGTTTCTAAGGAT  189
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  CAGTGATTGATCATGGCTGTTGTAGGGGAATCATGAAGGTTTCTAAGGAT  200

seq1  TTCAGC-ACACCTTTTAGATACCCTGAGGGTCCACCCTCTGAAATCAAA-  237
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  TTCAGCAACACCTTTTAGATACCCTGAGGGTCCACCCTCTGAAATCAAAA  250

seq1  -GAAATGCCTCATGAGCGTATTCTTTCAG-AAATAAGACCTTCAAAACCA  285
        ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAAATGCCTCATGAGCGTATTCTTTCAGAAAATAAGACCTTCAAAACCA  300

seq1  GGCACATAACCCCCTCCAATTTCCTATGGAAGGCATTATTCAAATATCCT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATAACCCCCTCCAATTTCCTATGGAAGGCATTATTCAAATATCCT  350

seq1  GGAGTGACGGATGGTCTAATAATTTGCAAAAACGTGCTCCTTACACTCTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGACGGATGGTCTAATAATTTGCAAAAACGTGCTCCTTACACTCTG  400

seq1  AGGTCAGCCCTGTTTTACTTAAAAATTTATACTCACACAAGTACCATCTG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCCCTGTTTTACTTAAAAATTTATACTCACACAAGTACCATCTG  450

seq1  GAGCCCACATCCTCTGTCTTAAGCTTCAAATAAATCCTGATTTACCTCGG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCACATCCTCTGTCTTAAGCTTCAAATAAATCCTGATTTACCTCGG  500

seq1  AAATGTTTGCCAAAAGTCTGCCTGCTAGAGAAGTGGCTAATTTCTCCTCT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTGCCAAAAGTCTGCCTGCTAGAGAAGTGGCTAATTTCTCCTCT  550

seq1  CTGAACATGCCTTTGCAGTATATGAAACATAGTAGACGTGTAATAAATGA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACATGCCTTTGCAGTATATGAAACATAGTAGACGTGTAATAAATGA  600

seq1  CCGTCCCCTGAGATGCTCTAGGATGCTCCAAAAAGGACCTATTGGGAAAC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCCCTGAGATGCTCTAGGATGCTCCAAAAAGGACCTATTGGGAAAC  650

seq1  AAAGGCTGGGCAACCTCAGTTGTCTGAGAAGAGCAGGAGGACTGAATCTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTGGGCAACCTCAGTTGTCTGAGAAGAGCAGGAGGACTGAATCTG  700

seq1  GCAAGAGGCAGGTTTGTTTTGTTTTCCTTTTGCTTTCTTCTTTCTGACTG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGCAGGTTTGTTTTGTTTTCCTTTTGCTTTCTTCTTTCTGACTG  750

seq1  GAGCCTAATCCACATAAAAGCGCCCCGTGCAGCATCAGCACTATGACTCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTAATCCACATAAAAGCGCCCCGTGCAGCATCAGCACTATGACTCA  800

seq1  ATGCCACAGCAGTTTCTTCACCAAACACCCTCCAGCTCATGGAATGTATC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACAGCAGTTTCTTCACCAAACACCCTCCAGCTCATGGAATGTATC  850

seq1  AGTCTGGGACACATTGTGATCTGATGAAATATCTGTAGAGTAAAAAACAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGGACACATTGTGATCTGATGAAATATCTGTAGAGTAAAAAACAA  900

seq1  ACAGAACAAAACAAACAAACAAACAAACAAAAACATCAAAGAGAGAAATG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACAAAACAAACAAACAAACAAACAAAAACATCAAAGAGAGAAATG  950

seq1  GGTAGGGGTCACGATACTGCTCGGTGGATACAGCACTTGCTAGGCGAACA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGTCACGATACTGCTCGGTGGATACAGCACTTGCTAGGCGAACA  1000

seq1  TAAGGAACTGAATTC  1000
      |||||||||||||||
seq2  TAAGGAACTGAATTC  1015


seq1: chr6_93056838_93057861
seq2: B6Ng01-221F23.g_64_1113

seq1  GAATTCTCCTTCTCAGTCTCCATGTGCTCAGCCCACATCTTGTTTTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTCTCAGTCTCCATGTGCTCAGCCCACATCTTGTTTTGTAT  50

seq1  TTTTAAGTTTCACTAGACTCTGACAGTACTTCAATAACAAACAATAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTCACTAGACTCTGACAGTACTTCAATAACAAACAATAGCCT  100

seq1  TTAGGTAAGTCTTTCATCGTTGAGAGAACATCATGGTTTTCTTTATGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTAAGTCTTTCATCGTTGAGAGAACATCATGGTTTTCTTTATGCCA  150

seq1  TGCCTTGATTAACTGCCATCTTTTGGTGGTGGTAAATGAAACCAAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGATTAACTGCCATCTTTTGGTGGTGGTAAATGAAACCAAGTTAC  200

seq1  CAGCAGGCTGCTCTGTCTTCCAGGGGACTGCTGATGGCTTTTTATTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCTGCTCTGTCTTCCAGGGGACTGCTGATGGCTTTTTATTAGGA  250

seq1  AGCTATGCAACTTGAGGTTCTACTGAAAAGGAGAAGAGGCCACTGGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCAACTTGAGGTTCTACTGAAAAGGAGAAGAGGCCACTGGAGAT  300

seq1  GGGAAGCCACGAAAACGTAAGTGACATTGCCCACCCAGTGTCCCCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCACGAAAACGTAAGTGACATTGCCCACCCAGTGTCCCCACATT  350

seq1  TCTTTTATCAGCACAATGAAAGTTTAGAGACTTAACAGTGATATTGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCAGCACAATGAAAGTTTAGAGACTTAACAGTGATATTGCAGT  400

seq1  GTTTTGTCCCTGAGGCCATAGTAGGAAGCAGAACTCACAACTCACACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTCCCTGAGGCCATAGTAGGAAGCAGAACTCACAACTCACACCCA  450

seq1  CAACTATCTGCCTGTAAATTCCTGTGGGTGGGGCCATATGGGTGTGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATCTGCCTGTAAATTCCTGTGGGTGGGGCCATATGGGTGTGGGAT  500

seq1  CTGGAGGTCAGAGAATAAAGCTAAATTTTGGTCTTCCACTTGCACTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGTCAGAGAATAAAGCTAAATTTTGGTCTTCCACTTGCACTTTAT  550

seq1  TTGCAGCAGGTCTCACTACTGCATACAGTAGGCCATACTTCAAACTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAGGTCTCACTACTGCATACAGTAGGCCATACTTCAAACTTTCC  600

seq1  ACCTCCCTGCTTCCCATAAGAGCACATGGATTACTGTGTTTAGCTTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTGCTTCCCATAAGAGCACATGGATTACTGTGTTTAGCTTTGGT  650

seq1  GTAGCGTCTAGGGATCTAAATGGAGATCTACACAGCTGTGTGGCAAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCGTCTAGGGATCTAAATGGAGATCTACACAGCTGTGTGGCAAGTGA  700

seq1  -TTTACACA-CCAAACGGTCTCCCAAGCTCCTTTCTATAAATTCTTACAT  748
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACACCCAAACGGTCTCCCAAGCTCCTTTCTATAAATTCTTACAT  750

seq1  T-CCTTCCCAGATGGCACAGGAGATTTGGCAATGGCAGAACAGGTCC-TT  796
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCCCTTCCCAGATGGCACAGGAGATTTGGCAATGGCAGAACAGGTCCTTT  800

seq1  GGAGCATAGACAACCCCAAGGC-TGATC-TTCTGTTGATT-ACTTCAGTT  843
      |||||||||||||||||||||| ||||| ||||||||||| |||||||||
seq2  GGAGCATAGACAACCCCAAGGCTTGATCTTTCTGTTGATTAACTTCAGTT  850

seq1  TCCTAAACACTTTTCA-TAATTAAAGAATTGAGTTAATTGCTGATG-AGG  891
      |||||||||||||||| |||||||||||||||||||| |||||||| |||
seq2  TCCTAAACACTTTTCATTAATTAAAGAATTGAGTTAAATGCTGATGAAGG  900

seq1  T-ACCTGG-CACGT-AGTTCA-CACA-GGTCCTACTTG-TGTTGGC-CG-  933
      | |||||| ||||| |||||| |||| ||||||||||| ||||||| || 
seq2  TAACCTGGCCACGTAAGTTCACCACAGGGTCCTACTTGATGTTGGCTCGG  950

seq1  -TGTTCCTCTGGCAAAGTGGAAA-GTT-GAGTG--TGCTCTGAGGCACCA  978
        |||| ||| || ||||||||| ||| |||||   ||||||||||||||
seq2  TGGTTCTTCTTGC-AAGTGGAAATGTTGGAGTGGTGGCTCTGAGGCACCA  999

seq1  TTTTG---CTCTTCTTTCCAGAAA--GAGTTTGGACTATTGGCAGCCCCT  1023
      |||||   || |||||| ||| ||   |||| ||||||||||||| ||||
seq2  TTTTGCTTCTTTTCTTTTCAGGAATGAAGTTGGGACTATTGGCAGTCCCT  1049

seq1  G  1024
      |
seq2  G  1050


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