BAC Information

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BAC

Clone NameB6Ng01-221H05
Chromosome6 (Build37)
Map Location 124,267,529 - 124,410,556
singlet/doubletdoublet
Overlap geneCd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3
Upstream geneEG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297
Downstream geneC1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6, Cd9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221H05.bB6Ng01-221H05.g
ACCGA036743GA036744
length1,144740
definitionB6Ng01-221H05.b B6Ng01-221H05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,409,409 - 124,410,556)(124,267,529 - 124,268,265)
sequence
gaattctagtcaaacaccgcttccttgatggctggttttaactttttttt
tttttgtctgtgtctttttcatttcttctgtaagatcagacttttgctaa
gtcagggaccttttgaattttattttgaaatatattttagtttgttgcct
ttcccctcaccttggcatcctagtgagggctcgcagatacactcagagct
atgttgtggagcacgtggatagacagagagggcagttgaaagggattgga
ggtacgctgaacctatccgtcctcctcctcctcctatgttgccttctgga
caaaaatcaccaacatggcttctgatattctccggggcttgttccctctc
ccccataccattcttcctttccttgagccctctcccttgtatggttttct
atctgttatgtacagcccagtatcctgtggagtggggatgagcagtctca
ggagtagactggccccctcctgccctcattcccaatcaggattcctgatt
gcagtttcctcagtgctcgaagctggctaaggcttccatatcgattctgc
tcctatgcgtgcagggcaaccgtgcatgttcgggtcaatgatgtgaatga
gtttgccccggtctttgtggagcgtctgtaccgtgctgcagtgacggagg
ggaagctgtatgatcggatcttacgtgtggaagccattgatggcgactgc
tccccgcagtacagccagatctgctactatgagatccttacgcccaacac
ccctttcctcattgacaatgatggtgagtcttctcttggtccctagctgc
tcagaccctctgctctcccgatgactgactgatcctctctattcctgccc
ctcccccccagactcttattcccctctttgtccctatgtgagactccctt
tcccccaagatacttcccttccactttaggctgcttatctgtatgtgcca
agtatactcatgccttcctgaactttcctctagtgcagtggttttcaact
gtgggggcttcgattaaccctttcacagggtcacatatcagatctgacca
tcagatattttacacagtagccaattacagttatgaagtaggcaacgatt
cttcttacggtttggtgggggaatccccacacacgaagaactgt
gaattccagtgtagtggggatgagtcccatctttcactatgctcagtggc
gcccccgctagacagaacttgtacccacagcagggatgtcagcgtagtct
gctcacgtaagacaaagaaaatattttcaatttgctcctaggctctgaaa
gagggttagagagtcacggatgtcttttctaaatcccggtctccttttag
gatacatagatattcgtctggcaggcggcgagtcctcctgtgagggaaga
gtggagctcaagacactcggagcctggggtcccctctgcagttctcattg
ggacatggaagatgctcatgtcttatgtcagcagctgaagtgtggggttg
cccaatctattccagaaggagcacattttgggaaaggagctggtcaggtc
tggagtcacatgttccactgcactggaactgaggaacatataggagattg
cctcatgactgctctgggtgcgccgacgtgttccgaaggacaggtggcct
ctgtcatctgctcaggtgagaggatgaagggcagagccagtgatgagcct
ctccacagtgctttagaatccgatgagcctgagtcagggatgaagcaaaa
gaaacagaagcagtctgtctgggaggttcacgagatctgtgctagaatag
gaacttcatttgtcttattagagagtgtgcaaatctgatttttcatcaac
ctttattgtcatctagtgcttcctgcaattggttctcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124409409_124410556
seq2: B6Ng01-221H05.b_47_1190 (reverse)

seq1  ACAGTTCTTCGTGTTGTGGTGATCCCCCCACCAAAACCGTAAGATGATTT  50
      ||||||||||||| ||||| ||| |||||||| ||||||||||| ||  |
seq2  ACAGTTCTTCGTG-TGTGGGGATTCCCCCACC-AAACCGTAAGAAGA-AT  47

seq1  TGTTG-CTACTTCATAACTGTAATTTGCTACTGTTGTAAATATCTGATGG  99
       |||| ||||||||||||||||||| ||||||||   |||||||||||||
seq2  CGTTGCCTACTTCATAACTGTAATTGGCTACTGTGTAAAATATCTGATGG  97

seq1  TCAGGATTCTGATATGTGACCCCTGTGAAAGGGTTATTCG-AGCCCCCAC  148
      ||||   |||||||||||| |||||||||||||||| ||| |||||||||
seq2  TCAG--ATCTGATATGTGA-CCCTGTGAAAGGGTTAATCGAAGCCCCCAC  144

seq1  AGGTTGAAAACCACTGCACTAGAGG-AAGTTCAGGAAGGCATGAGTATAC  197
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  A-GTTGAAAACCACTGCACTAGAGGAAAGTTCAGGAAGGCATGAGTATAC  193

seq1  TTGGCACATACAGATAAGCAGCCTAAAGTGGAAGGGAAGTATCTTGGGGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACATACAGATAAGCAGCCTAAAGTGGAAGGGAAGTATCTTGGGGG  243

seq1  -AAGGGAGTCTCACATAGGGACAAAGAGGGGAATAAGAGTCTGGGGGGGA  296
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGTCTCACATAGGGACAAAGAGGGGAATAAGAGTCTGGGGGGGA  293

seq1  GGGGCAGGAATAGAGAGGATCAGTCAGTCATCGGGAGAGCAGAGGGTCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGGCAGGAATAGAGAGGATCAGTCAGTCATCGGGAGAGCAGAGGGT-CT  342

seq1  GAGCAGCTAGGGACCAAGAGAAGACTCACCATCATTGTCAATGAGGAAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCTAGGGACCAAGAGAAGACTCACCATCATTGTCAATGAGGAAAG  392

seq1  GGGTGTTGGGCGTAAGGATCTCATAGTAGCAGATCTGGCTGTACTGCGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGGGCGTAAGGATCTCATAGTAGCAGATCTGGCTGTACTGCGGG  442

seq1  GAGCAGTCGCCATCAATGGCTTCCACACGTAAGATCCGATCATACAGCTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCGCCATCAATGGCTTCCACACGTAAGATCCGATCATACAGCTT  492

seq1  CCCCTCCGTCACTGCAGCACGGTACAGACGCTCCACAAAGACCGGGGCAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCGTCACTGCAGCACGGTACAGACGCTCCACAAAGACCGGGGCAA  542

seq1  ACTCATTCACATCATTGACCCGAACATGCACGGTTGCCCTGCACGCATAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCACATCATTGACCCGAACATGCACGGTTGCCCTGCACGCATAG  592

seq1  GAGCAGAATCGATATGGAAGCCTTAGCCAGCTTCGAGCACTGAGGAAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAATCGATATGGAAGCCTTAGCCAGCTTCGAGCACTGAGGAAACT  642

seq1  GCAATCAGGAATCCTGATTGGGAATGAGGGCAGGAGGGGGCCAGTCTACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCAGGAATCCTGATTGGGAATGAGGGCAGGAGGGGGCCAGTCTACT  692

seq1  CCTGAGACTGCTCATCCCCACTCCACAGGATACTGGGCTGTACATAACAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGACTGCTCATCCCCACTCCACAGGATACTGGGCTGTACATAACAG  742

seq1  ATAGAAAACCATACAAGGGAGAGGGCTCAAGGAAAGGAAGAATGGTATGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAACCATACAAGGGAGAGGGCTCAAGGAAAGGAAGAATGGTATGG  792

seq1  GGGAGAGGGAACAAGCCCCGGAGAATATCAGAAGCCATGTTGGTGATTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGAACAAGCCCCGGAGAATATCAGAAGCCATGTTGGTGATTTT  842

seq1  TGTCCAGAAGGCAACATAGGAGGAGGAGGAGGACGGATAGGTTCAGCGTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGAAGGCAACATAGGAGGAGGAGGAGGACGGATAGGTTCAGCGTA  892

seq1  CCTCCAATCCCTTTCAACTGCCCTCTCTGTCTATCCACGTGCTCCACAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAATCCCTTTCAACTGCCCTCTCTGTCTATCCACGTGCTCCACAAC  942

seq1  ATAGCTCTGAGTGTATCTGCGAGCCCTCACTAGGATGCCAAGGTGAGGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTGAGTGTATCTGCGAGCCCTCACTAGGATGCCAAGGTGAGGGG  992

seq1  AAAGGCAACAAACTAAAATATATTTCAAAATAAAATTCAAAAGGTCCCTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAACAAACTAAAATATATTTCAAAATAAAATTCAAAAGGTCCCTG  1042

seq1  ACTTAGCAAAAGTCTGATCTTACAGAAGAAATGAAAAAGACACAGACAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAAAAGTCTGATCTTACAGAAGAAATGAAAAAGACACAGACAAA  1092

seq1  AAAAAAAAAAGTTAAAACCAGCCATCAAGGAAGCGGTGTTTGACTAGAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGTTAAAACCAGCCATCAAGGAAGCGGTGTTTGACTAGAAT  1142

seq1  TC  1148
      ||
seq2  TC  1144

seq1: chr6_124267529_124268265
seq2: B6Ng01-221H05.g_63_802

seq1  GAATTCCAGTGTAGTGGGGATGAGTCCCATCTTTCACTATGCTCAGTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTAGTGGGGATGAGTCCCATCTTTCACTATGCTCAGTGGC  50

seq1  GCCCCCGCTAGACAGAACTTGTACCCACAGCAGGGATGTCAGCGTAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCGCTAGACAGAACTTGTACCCACAGCAGGGATGTCAGCGTAGTCT  100

seq1  GCTCACGTAAGACAAAGAAAATATTTTCAATTTGCTCCTAGGCTCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACGTAAGACAAAGAAAATATTTTCAATTTGCTCCTAGGCTCTGAAA  150

seq1  GAGGGTTAGAGAGTCACGGATGTCTTTTCTAAATCCCGGTCTCCTTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTAGAGAGTCACGGATGTCTTTTCTAAATCCCGGTCTCCTTTTAG  200

seq1  GATACATAGATATTCGTCTGGCAGGCGGCGAGTCCTCCTGTGAGGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATAGATATTCGTCTGGCAGGCGGCGAGTCCTCCTGTGAGGGAAGA  250

seq1  GTGGAGCTCAAGACACTCGGAGCCTGGGGTCCCCTCTGCAGTTCTCATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCTCAAGACACTCGGAGCCTGGGGTCCCCTCTGCAGTTCTCATTG  300

seq1  GGACATGGAAGATGCTCATGTCTTATGTCAGCAGCTGAAGTGTGGGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGGAAGATGCTCATGTCTTATGTCAGCAGCTGAAGTGTGGGGTTG  350

seq1  CCCAATCTATTCCAGAAGGAGCACATTTTGGGAAAGGAGCTGGTCAGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCTATTCCAGAAGGAGCACATTTTGGGAAAGGAGCTGGTCAGGTC  400

seq1  TGGAGTCACATGTTCCACTGCACTGGAACTGAGGAACATATAGGAGATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCACATGTTCCACTGCACTGGAACTGAGGAACATATAGGAGATTG  450

seq1  CCTCATGACTGCTCTGGGTGCGCCGACGTGTTCCGAAGGACAGGTGGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGACTGCTCTGGGTGCGCCGACGTGTTCCGAAGGACAGGTGGCCT  500

seq1  CTGTCATCTGCTCAGGTGAGAGGATGAAGGGCAGAGCCAGTGATGAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATCTGCTCAGGTGAGAGGATGAAGGGCAGAGCCAGTGATGAGCCT  550

seq1  CTCCACAGTGCTTTAGAATCCGATGAGCCTGAGTCAGGGATGAAGCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGTGCTTTAGAATCCGATGAGCCTGAGTCAGGGATGAAGCAAAA  600

seq1  GAAACAGAAGCAGTCTGTCTGGGAGGTTCACGAGATCTGTGCTAGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGAAGCAGTCTGTCTGGGAGGTTCACGAGATCTGTGCTAGAATAG  650

seq1  GAACTTCATTTGTCTTATTAGAGAGTGTGCAAATCTGA-TTTTCATCAAC  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAACTTCATTTGTCTTATTAGAGAGTGTGCAAATCTGATTTTTCATCAAC  700

seq1  C-TTATTGTCATCTAGTGCTTCCTGCAA-TGGTTCTCAAC  737
      | |||||||||||||||||||||||||| |||||||||||
seq2  CTTTATTGTCATCTAGTGCTTCCTGCAATTGGTTCTCAAC  740