BAC Information

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BAC

Clone NameB6Ng01-221O12
Chromosome6 (Build37)
Map Location 42,213,957 - 42,299,370
singlet/doubletdoublet
Overlap geneTmem139, Casp2, Clcn1, 6330503C03Rik
Upstream geneTry4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1
Downstream geneZyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221O12.bB6Ng01-221O12.g
ACCGA037070GA037071
length1,0971,136
definitionB6Ng01-221O12.b B6Ng01-221O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,213,957 - 42,215,058)(42,298,244 - 42,299,370)
sequence
gaattcttcgacttaggggtccacgagttgtggccactgctcctgatctg
caaagcatgagagtggcccccaaactggagcctagtactccacctcctgc
ctatgaaatcagttttgctcatgctgatgatgacagtgttttctatgaag
ataaatggatacttccctaagtggtgccctcagaacctgtgcactcattt
gcccagcatttcctagtgtctattggatcagaaactggttttacccggac
atcacaatcgaggccttcaaagcagcggggagtcgggctgtggcatgtcg
ttcacagataaatggcacacctagattcttctggaaacattctggaacct
atctgatgaccagtatttccagagtaaggtggaagatgagaaagagataa
gttaccaagagaagctggagggatacctctgagtgactgctgtgtttctt
ctattgtagacaccaagtctccctgagattcctgatggggtattacctac
caagataatgagagcttctaaggttgaggggagctgaatagtttgcacaa
gaacgggatgctagtaaaaacataaaaataactcgaatcaaattccaatt
ccagtgcctcctgttttcaataccaagcaggcaatccgcattactttata
gccttgtcaactggtagataagagaatgagaggacacttgtgtaggaaaa
gcgcgaccacgagctgccccagcctgggagaagagcgcctcctagtgctt
tccgtcttccctgcatcctggccctggaagttcaaggcgaacaaggataa
caagggaagcccagcccctttggtctcttgtagttacttcaggaggggtc
ggaggaaccaggggagggggctgcggtttccgcgggaatcgatagccaat
caggtccccgagtaggagaaccctcgctcttttcccgccctttccgttcc
ttctagcgcctcctctcttcccattgggctgtgcgagcctcagcgagcag
tgtgcgctgcgcatgtcccgcgtgggtgggggctgctggccgtcggcgga
gcgtgcgcagcgcgccgcgtgggagctgggggaagggtatgcggggg

ctttgccctagacccgcctgcaatagtattgccccggggacaagagtcca
gtgctttgagtccaggaatggaggtacaagggcgaagtcagggcgagtgg
tcagacaacctaggaagacccaaatagcccccggggactagtccttgagg
atcccttcagcaagcctttcccagtccctcaagagtctttgggttgtcag
cgcgccccgggacaaagctcggtggagccccccactggtcctaccagatt
cctcagcctgagactgccccaggctacatgaaagagatatgactaagctg
gtgtctgcttttcttactttcttaatcttgcatctttcccttccgatctt
cttcttcttcttctttttttttttttaaacaacacacggaaacttcgtcc
aaattatagagttacgagctagagcctctagtccaatatccaaccctcgg
tgcttcctttggtttcgccctgtcatccctggctgaggctccaaaccttg
gcgctccccatctgctgcaccctactgtccagtatggttggtcagtatat
gtccttgagctatgctttaggggcatgcaaactaaccccatgaacctagg
ataagaaactgggggatgttacctgaaaagacggccccaagggttgcact
caggtcagagttaattaaccctgttggcaaagatggagaaactccgtgag
gtcagggagcctggtttccaactcagtggacaagatttttcattcattcg
ggtttcattgcctccattgtaaaagggatggcatttagttcgtttgcctg
ctgctttatgtgaagagataaataacatgccatgcctgaaaattctatat
agttctcagtattacttccaagttccagcctggaaaaacaacggaaattt
cccagccagttaacctaggcagcttttctcttcacatgctccctttctag
cttgccaggcaggtttactgtgtcttaggagaatcaaagccctctcctac
tgtcaaccttaagcctgagtcaatatctattgactatacattcatcatct
ttcaagccggctagtcctctcttttctctttgcatcttaatgttccatca
ccagtggttttggcgtttctatgtgtgaacatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_42213957_42215058
seq2: B6Ng01-221O12.b_50_1146

seq1  GAATTCTTCGACTTAGGGGTCCACGAGTTGTGGCCACTGCTCCTGATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCGACTTAGGGGTCCACGAGTTGTGGCCACTGCTCCTGATCTG  50

seq1  CAAAGCATGAGAGTGGCCCCCAAACTGGAGCCTAGTACTCCACCTCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATGAGAGTGGCCCCCAAACTGGAGCCTAGTACTCCACCTCCTGC  100

seq1  CTATGAAATCAGTTTTGCTCATGCTGATGATGACAGTGTTTTCTATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAATCAGTTTTGCTCATGCTGATGATGACAGTGTTTTCTATGAAG  150

seq1  ATAAATGGATACTTCCCTAAGTGGTGCCCTCAGAACCTGTGCACTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGATACTTCCCTAAGTGGTGCCCTCAGAACCTGTGCACTCATTT  200

seq1  GCCCAGCATTTCCTAGTGTCTATTGGATCAGAAACTGGTTTTACCCGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCATTTCCTAGTGTCTATTGGATCAGAAACTGGTTTTACCCGGAC  250

seq1  ATCACAATCGAGGCCTTCAAAGCAGCGGGGAGTCGGGCTGTGGCATGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATCGAGGCCTTCAAAGCAGCGGGGAGTCGGGCTGTGGCATGTCG  300

seq1  TTCACAGATAAATGGCACACCTAGATTCTTCTGGAAACATTCTGGAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGATAAATGGCACACCTAGATTCTTCTGGAAACATTCTGGAACCT  350

seq1  ATCTGATGACCAGTATTTCCAGAGTAAGGTGGAAGATGAGAAAGAGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGACCAGTATTTCCAGAGTAAGGTGGAAGATGAGAAAGAGATAA  400

seq1  GTTACCAAGAGAAGCTGGAGGGATACCTCTGAGTGACTGCTGTGTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAAGAGAAGCTGGAGGGATACCTCTGAGTGACTGCTGTGTTTCTT  450

seq1  CTATTGTAGACACCAAGTCTCCCTGAGATTCCTGATGGGGTATTACCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTAGACACCAAGTCTCCCTGAGATTCCTGATGGGGTATTACCTAC  500

seq1  CAAGATAATGAGAGCTTCTAAGGTTGAGGGGAGCTGAATAGTTTGCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAATGAGAGCTTCTAAGGTTGAGGGGAGCTGAATAGTTTGCACAA  550

seq1  GAACGGGATGCTAGTAAAAACATAAAAATAACTCGAATCAAATTCCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGGATGCTAGTAAAAACATAAAAATAACTCGAATCAAATTCCAATT  600

seq1  CCAGTGCCTCCTGTTTTCAATACCAAGCAGGCAATCCGCATTACTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCTCCTGTTTTCAATACCAAGCAGGCAATCCGCATTACTTTATA  650

seq1  GCCTTGTCAACTGGTAGATAAGAGAATGAGAGGACACTTGTGTAGGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTCAACTGGTAGATAAGAGAATGAGAGGACACTTGTGTAGGAAAA  700

seq1  GCGCGACCACGAGCTGCCCCAGCCTGGGAGAAGAGCGCCTCCTAGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGACCACGAGCTGCCCCAGCCTGGGAGAAGAGCGCCTCCTAGTGCTT  750

seq1  TCCGTCTTCCCTGCATCCTGGCCCTGGAAGTTCAAGGCGAACAAGGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTTCCCTGCATCCTGGCCCTGGAAGTTCAAGGCGAACAAGGATAA  800

seq1  CAAGGGAAGCCCAGCCCCTTTGGTCTCTTGTAGTTACTTCAGGAGGGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAGCCCAGCCCCTTTGGTCTCTTGTAGTTACTTCAGGAGGGGTC  850

seq1  GGAGGAACCAGGGGAGGGGGCTGCGGTTTCCGCGGGAATCGATAGCCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAACCAGGGGAGGGGGCTGCGGTTTCCGCGGGAATCGATAGCCAAT  900

seq1  CAGGTCCCCGAGTAGGAGAACCCTCGCTCTTTTCCCGCCCCTTCCCGTTC  950
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CAGGTCCCCGAGTAGGAGAACCCTCGCTCTTTTCCCG-CCCTTTCCGTTC  949

seq1  CTTCTAGCGCCTCCTCTCTTCCCATTGGGCTGTGCGAGCCTCAGCGAGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGCGCCTCCTCTCTTCCCATTGGGCTGTGCGAGCCTCAGCGAGCA  999

seq1  GTGTGCGCTTGCGCATGTCCCGGCGTGGGTGGGGCTTGCTGG-CGTCGGG  1049
      |||||||| |||||||||||| ||||||||||||  |||||| |||| ||
seq2  GTGTGCGC-TGCGCATGTCCC-GCGTGGGTGGGGGCTGCTGGCCGTC-GG  1046

seq1  CGGAGCCGTGCGCAAGCGCGGCGCGGTGGGAGGCTGGGGGA--GGGATGC  1097
      ||||| ||||||| |||||| ||| |||||| |||||||||  || ||||
seq2  CGGAG-CGTGCGC-AGCGCGCCGC-GTGGGA-GCTGGGGGAAGGGTATGC  1092

seq1  GGGGG  1102
      |||||
seq2  GGGGG  1097


seq1: chr6_42298244_42299370
seq2: B6Ng01-221O12.g_74_1209 (reverse)

seq1  ATGTATGGTCACACAT-GAAACGC--AAAACACTGGTGATGGAAACATTA  47
      ||||||| |||||||| |||||||  ||| |||||||||||| |||||||
seq2  ATGTATGTTCACACATAGAAACGCCAAAACCACTGGTGATGG-AACATTA  49

seq1  AGATG-ACAGAGAAAAGAGA-GACTAGCGGGGCCTGGAAAGATGATGAAT  95
      ||||| | |||||||||||| ||||||| ||  || ||||||||||||||
seq2  AGATGCAAAGAGAAAAGAGAGGACTAGCCGG--CTTGAAAGATGATGAAT  97

seq1  GTATAGTC-ATAGATA-TGACTCAAGGCTTAAGGTTGACAGTAGGAGAGG  143
      |||||||| ||||||| |||||| ||||||||||||||||||||||||||
seq2  GTATAGTCAATAGATATTGACTC-AGGCTTAAGGTTGACAGTAGGAGAGG  146

seq1  GCTTTGAATCTCCTAAGACACAGTAAACCTGCCTGGCAAGCTAG-AAGGG  192
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  GCTTTGATTCTCCTAAGACACAGTAAACCTGCCTGGCAAGCTAGAAAGGG  196

seq1  AGCATGTG-AGAG-AAAGCTGCCTAGGTTAACTGGCT-GGAAATTTCCGT  239
      |||||||| |||| ||||||||||||||||||||||| ||||||||||||
seq2  AGCATGTGAAGAGAAAAGCTGCCTAGGTTAACTGGCTGGGAAATTTCCGT  246

seq1  TG-TTTTCCAGGCTGGAACTTGGAAGTAATACTGAGAACTATATAGAATT  288
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCAGGCTGGAACTTGGAAGTAATACTGAGAACTATATAGAATT  296

seq1  TTCAGGCATGGCATGTTATTTATCTCTTCACATAAAGCAGCAGGCAAACG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCATGGCATGTTATTTATCTCTTCACATAAAGCAGCAGGCAAACG  346

seq1  AACTAAATGCCATCCCTTTTACAATGGAGGCAATGAAA-CCGAATGAATG  387
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACTAAATGCCATCCCTTTTACAATGGAGGCAATGAAACCCGAATGAATG  396

seq1  AAAAATCTTGTCCACTGAGTTGGAAACCAGGCTCCCTGACCTCACGGAGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTGTCCACTGAGTTGGAAACCAGGCTCCCTGACCTCACGGAGT  446

seq1  TTCTCCATCTTTGCCAACAGGGTTAATTAACTCTGACCTGAGTGCAACCC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATCTTTGCCAACAGGGTTAATTAACTCTGACCTGAGTGCAACCC  496

seq1  TTGGGGCCGTCTTTTCAGGTAACATCCCCCAGTTTCTTATCCTAGGTTCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCCGTCTTTTCAGGTAACATCCCCCAGTTTCTTATCCTAGGTTCA  546

seq1  TGGGGTTAGTTTGCATGCCCCTAAAGCATAGCTCAAGGACATATACTGAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTAGTTTGCATGCCCCTAAAGCATAGCTCAAGGACATATACTGAC  596

seq1  CAACCATACTGGACAGTAGGGTGCAGCAGATGGGGAGCGCCAAGGTTTGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATACTGGACAGTAGGGTGCAGCAGATGGGGAGCGCCAAGGTTTGG  646

seq1  AGCCTCAGCCAGGGATGACAGGGCGAAACCAAAGGAAGCACCGAGGGTTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGCCAGGGATGACAGGGCGAAACCAAAGGAAGCACCGAGGGTTG  696

seq1  GATATTGGACTAGAGGCTCTAGCTCGTAACTCTATAATTTGGACGAAGTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGGACTAGAGGCTCTAGCTCGTAACTCTATAATTTGGACGAAGTT  746

seq1  TCCGTGTGTTGTTTAAAAAAAAAAAAAGAAGAAGAAGAAGAAGATCGGAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTGTGTTGTTTAAAAAAAAAAAAAGAAGAAGAAGAAGAAGATCGGAA  796

seq1  GGGAAAGATGCAAGATTAAGAAAGTAAGAAAAGCAGACACCAGCTTAGTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGATGCAAGATTAAGAAAGTAAGAAAAGCAGACACCAGCTTAGTC  846

seq1  ATATCTCTTTCATGTAGCCTGGGGCAGTCTCAGGCTGAGGAATCTGGTAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTTTCATGTAGCCTGGGGCAGTCTCAGGCTGAGGAATCTGGTAG  896

seq1  GACCAGTGGGGGGCTCCACCGAGCTTTGTCCCGGGGCGCGCTGACAACCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTGGGGGGCTCCACCGAGCTTTGTCCCGGGGCGCGCTGACAACCC  946

seq1  AAAGACTCTTGAGGGACTGGGAAAGGCTTGCTGAAGGGATCCTCAAGGAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCTTGAGGGACTGGGAAAGGCTTGCTGAAGGGATCCTCAAGGAC  996

seq1  TAGTCCCCGGGGGCTATTTGGGTCTTCCTAGGTTGTCTGACCACTCGCCC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCCGGGGGCTATTTGGGTCTTCCTAGGTTGTCTGACCACTCGCCC  1046

seq1  TGACTTCGCCCTTGTACCTCCATTCCTGGACTCAAAGCACTGGACTCTTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCGCCCTTGTACCTCCATTCCTGGACTCAAAGCACTGGACTCTTG  1096

seq1  TCCCCGGGGCAATACTATTGCAGGCGGGTCTAGGGCAAAG  1127
      ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGGGGCAATACTATTGCAGGCGGGTCTAGGGCAAAG  1136


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