BAC Information

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BAC

Clone NameB6Ng01-222H20
Chromosome6 (Build37)
Map Location 121,121,293 - 121,247,658
singlet/doubletdoublet
Overlap genePex26, Tuba8, Usp18
Upstream geneNinj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps
Downstream geneSlc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222H20.bB6Ng01-222H20.g
ACCGA037491GA037492
length1,0281,205
definitionB6Ng01-222H20.b B6Ng01-222H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,246,881 - 121,247,658)(121,121,293 - 121,122,478)
sequence
gaattccagttagcaaatgtagaaggaaagacagaaataggaacccacca
ttggacagacaactttagtaaccacaacaccagttagatctgtgaataca
agttggaggaagaccagaattttcatagtttctaagtgtcttccccacag
atatttatacactacaaagggaaagatgttaacttcatggtagaaaggcc
aggaagcacgcagccatagaacacacgggtaccattcacttcctgaagtg
tgtatgaagagtcagtcatgcaggcacaatacactgctcctcttgccaat
catcctatttgatcctgagagaacagaacacagccccaagcaaaggacgt
acaacaaacaactgttctttatggacatccctgtgagaaactgcttagat
cactggatcactggggtgggaggaccaaccctacctgtaagctcgagtcc
tgggcggagggaaaggagaacacagaccaagcgcttccacgcacctgcct
ctgcttctgaggcgcagatacaatgcggtcagctgcctcaagctcccacc
gccttgaccttcccacaggacaggctgtctcctcaaactgggtcaaaaat
aaacctttcctcaggtcgcttttgtattttgctgcagcgcctagatgagt
aattaatatagtgttcagatcacagaggataagaaaagatacataggcaa
gtttaggatacaggagactagagaaacgctaagtgcatcctgggatcttg
aattggagtgtaggtagaatctggactagaaaggctcatcaacataaaaa
tcagtgtaatttaaatgagatcattagcttaataacactttaccaatatt
gatcttccatttttgacaattgtataatgcttatatcagcagaaactgac
cacagattgcatgaagattattttttttttacaacttttaaatcttaggc
tagtttaaaatttaagggatgtgagctaagatagtttcactccttggcta
tagcagtccagtgtttgactggaataaa
gaattcagataaaaggaaggacagttccaaggaaagcacttggtgaagtg
cttaatgtggacttcagctcatgtatgagccaggagctgcatggccagga
gctgcgtggccaggagctctgtggccgggagccaggagctgcgtggccca
agataactgtggcctttctctggctcagggtcatcatctgacaccaagac
ctttccatctctttcacttgtctcctcctctgtcattcccgactcctctt
ctacagcctggtcatttgggctttaatctcagggtgaagaagaggctacg
aaagcaccatgtgttttaaacaggtcattgtatgcgtgtgtgcctgcatg
agcttgtgtgcacaatacacataaagatgcctgagaaggtaaggaggggt
tggatctcttggcactggagttgcaggtgattgtaagacacctgatatgg
gtgacggtaactaaacccaggtcttctgcaggagcagtaagtgttcttga
tcgacgcaccatctagtcagtcacactgtgtgctttgagtcacactgtgt
gctttgacaggagtgatactttacaccaccccacagtggtgccatccacc
ttgtagattatagcatacacaggggctgccttttctatgcaaaatacctg
gaatccgtgcaatgcataccttatttctctccgagactcagtaacaaagc
agcaaatctcttgggaataacatctaccatctggtagagaccaggttctg
agactagacatttaaattgatgaaaaaaaatgcccctaagcttttcaagt
cttcttattgttggcctgaggtcaagggtcttttgatataagggtttcaa
atgtttgtatcttctctctttcaagctccaatatccactatgccccaccc
taaccacacatctggacagatgaatgggccattttgtctccaccccttgc
ttcagaagttcctcccattgggaatgccctctctctacagcatcgggcta
aattggaatcctgcagttaggcccttccttgccagcccatcttcaaaaca
cttccacttatcatccttctgagcttatttggaaagtctctcctgtatca
ccagctctctgggtggacatccaatcactactttaagaacacccacttgg
gcctggaagaatggctcaaatggtaaaaccaatgttgcactcttccagag
tcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121246881_121247658
seq2: B6Ng01-222H20.b_49_826 (reverse)

seq1  TAGTCCAGATTCTACCTACACTCCAATTCAAGATCCCAGGATGCACTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAGATTCTACCTACACTCCAATTCAAGATCCCAGGATGCACTTAG  50

seq1  CGTTTCTCTAGTCTCCTGTATCCTAAACTTGCCTATGTATCTTTTCTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCTCTAGTCTCCTGTATCCTAAACTTGCCTATGTATCTTTTCTTAT  100

seq1  CCTCTGTGATCTGAACACTATATTAATTACTCATCTAGGCGCTGCAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGATCTGAACACTATATTAATTACTCATCTAGGCGCTGCAGCAA  150

seq1  AATACAAAAGCGACCTGAGGAAAGGTTTATTTTTGACCCAGTTTGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAAAGCGACCTGAGGAAAGGTTTATTTTTGACCCAGTTTGAGGAG  200

seq1  ACAGCCTGTCCTGTGGGAAGGTCAAGGCGGTGGGAGCTTGAGGCAGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTGTCCTGTGGGAAGGTCAAGGCGGTGGGAGCTTGAGGCAGCTGA  250

seq1  CCGCATTGTATCTGCGCCTCAGAAGCAGAGGCAGGTGCGTGGAAGCGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATTGTATCTGCGCCTCAGAAGCAGAGGCAGGTGCGTGGAAGCGCTT  300

seq1  GGTCTGTGTTCTCCTTTCCCTCCGCCCAGGACTCGAGCTTACAGGTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGTTCTCCTTTCCCTCCGCCCAGGACTCGAGCTTACAGGTAGGG  350

seq1  TTGGTCCTCCCACCCCAGTGATCCAGTGATCTAAGCAGTTTCTCACAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTCCCACCCCAGTGATCCAGTGATCTAAGCAGTTTCTCACAGGG  400

seq1  ATGTCCATAAAGAACAGTTGTTTGTTGTACGTCCTTTGCTTGGGGCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATAAAGAACAGTTGTTTGTTGTACGTCCTTTGCTTGGGGCTGTG  450

seq1  TTCTGTTCTCTCAGGATCAAATAGGATGATTGGCAAGAGGAGCAGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTCTCAGGATCAAATAGGATGATTGGCAAGAGGAGCAGTGTAT  500

seq1  TGTGCCTGCATGACTGACTCTTCATACACACTTCAGGAAGTGAATGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGCATGACTGACTCTTCATACACACTTCAGGAAGTGAATGGTAC  550

seq1  CCGTGTGTTCTATGGCTGCGTGCTTCCTGGCCTTTCTACCATGAAGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTGTTCTATGGCTGCGTGCTTCCTGGCCTTTCTACCATGAAGTTAA  600

seq1  CATCTTTCCCTTTGTAGTGTATAAATATCTGTGGGGAAGACACTTAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTCCCTTTGTAGTGTATAAATATCTGTGGGGAAGACACTTAGAAA  650

seq1  CTATGAAAATTCTGGTCTTCCTCCAACTTGTATTCACAGATCTAACTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAATTCTGGTCTTCCTCCAACTTGTATTCACAGATCTAACTGGT  700

seq1  GTTGTGGTTACTAAAGTTGTCTGTCCAATGGTGGGTTCCTATTTCTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTTACTAAAGTTGTCTGTCCAATGGTGGGTTCCTATTTCTGTCT  750

seq1  TTCCTTCTACATTTGCTAACTGGAATTC  778
      ||||||||||||||||||||||||||||
seq2  TTCCTTCTACATTTGCTAACTGGAATTC  778

seq1: chr6_121121293_121122478
seq2: B6Ng01-222H20.g_67_1271

seq1  GAATTCAGATAAAAGGAAGGACAGTTCCAAGGAAAGCACTTGGTGAAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATAAAAGGAAGGACAGTTCCAAGGAAAGCACTTGGTGAAGTG  50

seq1  CTTAATGTGGACTTCAGCTCATGTATGAGCCAGGAGCTGCATGGCCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTGGACTTCAGCTCATGTATGAGCCAGGAGCTGCATGGCCAGGA  100

seq1  GCTGCGTGGCCAGGAGCTCTGTGGCCGGGAGCCAGGAGCTGCGTGGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGTGGCCAGGAGCTCTGTGGCCGGGAGCCAGGAGCTGCGTGGCCCA  150

seq1  AGATAACTGTGGCCTTTCTCTGGCTCAGGGTCATCATCTGACACCAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACTGTGGCCTTTCTCTGGCTCAGGGTCATCATCTGACACCAAGAC  200

seq1  CTTTCCATCTCTTTCACTTGTCTCCTCCTCTGTCATTCCCGACTCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATCTCTTTCACTTGTCTCCTCCTCTGTCATTCCCGACTCCTCTT  250

seq1  CTACAGCCTGGTCATTTGGGCTTTAATCTCAGGGTGAAGAAGAGGCTACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCCTGGTCATTTGGGCTTTAATCTCAGGGTGAAGAAGAGGCTACG  300

seq1  AAAGCACCATGTGTTTTAAACAGGTCATTGTATGCGTGTGTGCCTGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCATGTGTTTTAAACAGGTCATTGTATGCGTGTGTGCCTGCATG  350

seq1  AGCTTGTGTGCACAATACACATAAAGATGCCTGAGAAGGTAAGGAGGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTGTGCACAATACACATAAAGATGCCTGAGAAGGTAAGGAGGGGT  400

seq1  TGGATCTCTTGGCACTGGAGTTGCAGGTGATTGTAAGACACCTGATATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTCTTGGCACTGGAGTTGCAGGTGATTGTAAGACACCTGATATGG  450

seq1  GTGACGGTAACTAAACCCAGGTCTTCTGCAGGAGCAGTAAGTGTTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGGTAACTAAACCCAGGTCTTCTGCAGGAGCAGTAAGTGTTCTTGA  500

seq1  TCGACGCACCATCTAGTCAGTCACACTGTGTGCTTTGAGTCACACTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACGCACCATCTAGTCAGTCACACTGTGTGCTTTGAGTCACACTGTGT  550

seq1  GCTTTGACAGGAGTGATACTTTACACCACCCCACAGTGGTGCCATCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGACAGGAGTGATACTTTACACCACCCCACAGTGGTGCCATCCACC  600

seq1  TTGTAGATTATAGCATACACAGGGGCTGCCTTTTCTATGCAAAATACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATTATAGCATACACAGGGGCTGCCTTTTCTATGCAAAATACCTG  650

seq1  GAATCCGTGCAATGCATACCTTATTTCTCTCCGAGACTCAGTAACAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCGTGCAATGCATACCTTATTTCTCTCCGAGACTCAGTAACAAAGC  700

seq1  AGCAAATCTCTTGGGAATAACATCTACCATCTGGTAGAGACCAGGTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCTCTTGGGAATAACATCTACCATCTGGTAGAGACCAGGTTCTG  750

seq1  AGACTAGACATTTAAATTGATGAAAAAAAATGCCCCTAAGC-TTTCAAGT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACTAGACATTTAAATTGATGAAAAAAAATGCCCCTAAGCTTTTCAAGT  800

seq1  CTTCTTATTGTTGGCCTGAGGTCAAGGGTCTTTTGATATAAGGGTTTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATTGTTGGCCTGAGGTCAAGGGTCTTTTGATATAAGGGTTTCAA  850

seq1  ATGTTTGTATCTTCTCTCTTTCAAGCTCCAATATCCACTATGCCCCACCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTATCTTCTCTCTTTCAAGCTCCAATATCCACTATGCCCCACCC  900

seq1  TAAACACACATCTGGACAGATGAAT-GGCCATTTTGTCTCCACCCCTTGC  948
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAACCACACATCTGGACAGATGAATGGGCCATTTTGTCTCCACCCCTTGC  950

seq1  TTCAGAAGTTCCTCCCATT-GGAATG-CCTCTCTCTACAGCATCGGGCT-  995
      ||||||||||||||||||| |||||| |||||||||||||||||||||| 
seq2  TTCAGAAGTTCCTCCCATTGGGAATGCCCTCTCTCTACAGCATCGGGCTA  1000

seq1  AATTGGA--TCTGCAGTTAGG-CCTTCCTTGCCAGCCCATCT--CAGACA  1040
      |||||||   ||||||||||| ||||||||||||||||||||   | |||
seq2  AATTGGAATCCTGCAGTTAGGCCCTTCCTTGCCAGCCCATCTTCAAAACA  1050

seq1  C-TCCAC-TATCATCC-TCTGAGCTTATTT-GAAAG--TCTCCTGTATTC  1084
      | ||||| |||||||| ||||||||||||| |||||  ||||||||||  
seq2  CTTCCACTTATCATCCTTCTGAGCTTATTTGGAAAGTCTCTCCTGTAT--  1098

seq1  AACCAGCTCT---GGT-GACATCAAATCACTAC-TTAAGAACAACCACTT  1129
       |||||||||   ||| |||||| ||||||||| ||||||||| ||||||
seq2  CACCAGCTCTCTGGGTGGACATCCAATCACTACTTTAAGAACACCCACTT  1148

seq1  TGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCATTGGTTG--CTCTTCCA  1177
       || |||||   ||||||||   | ||| | || | ||||  ||||||||
seq2  GGGCCTGGAAGAATGGCTCAAATGGTAAAACCAAT-GTTGCACTCTTCCA  1197

seq1  GAGGTCCTG  1186
      || ||||||
seq2  GA-GTCCTG  1205