BAC Information

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BAC

Clone NameB6Ng01-222I07
Chromosome6 (Build37)
Map Location 86,640,046 - 86,641,164
singlet/doubletsinglet
Overlap genenone
Upstream geneAlms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik
Downstream geneGmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222I07.b
ACCGA037513
length1,107
definitionB6Ng01-222I07.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctgctgtgaatgcctcctccctcgtagagttgttgtctggaga
ttgctaaagcagtggctggatcggtgagaggctacatttctgactgtgca
cctggctgtgattatctctctcctgctgctcttttctttcagatgcataa
gagattctttactctttatatgttaagttaaaaaacaaaaacaaaaacca
agaaaacagataaagcacacttctgtaatcccagcactcaacaagctgag
gcaggagaatctcaagattgtgggcagcctgggatgcattgcaagaccct
actttaaaacatcatcaacagagaacataacaacgacaaacaatcatact
caaatatatttttacaactcttggaaatgaaagcgtaaatataccaacaa
caatttaggtcactagtcagggtggttcctgttggttagcacactctcct
ggtcactgtcagcttacaaagcggcagcagtgtcaggtgacagtaaccat
cgaatatggagacttcatatttgtcagcccttctacatagcctctgccaa
gttctgggtgagttgggtttttattaaatgttaaaactagaaagctatcc
accaacaataatttctttgtctattatatcagttaagagaatatattgta
gtttttttattttttatatttttagaattatttatgtatataagtatact
gtagctatcttcagtcacaccagaagggggcatcggatcccattacagat
ggttgtgagccactgggtgctgggaattgaacatggggacctctggaaga
gcagtcagtgttcttaatcactgagccatctctccagcccccatattgta
gtttcatcctgaattattacagaggggcatggacacatgtgcgtgcacac
acacacatacttccagtcctttctaagaatttaccttgaaccttggcaag
agagtaagcaaatggaagcagtactggcactaacttttggggtagctttc
tcacatgggctctcactgtgtagtccaagctggcctcagactgagatctg
tgctatacttccagtgtcgtgcttccaagtgctgaggttactgctcagta
caccccg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86640046_86641164
seq2: B6Ng01-222I07.b_39_1145 (reverse)

seq1  CGGGGTGTACTGAGCAGTAACCTCAGCACTTGGGAGGCACGGACACTGGG  50
      ||||||||||||||||||||||||||||||| ||| |||| |||||| ||
seq2  CGGGGTGTACTGAGCAGTAACCTCAGCACTT-GGAAGCAC-GACACT-GG  47

seq1  AAGTATAGGCACAAGGATCTCCAGTCTGAGGCCAGCTTGGACTACACAGT  100
      ||||||| |||||  ||||| |||||||||||||||||||||||||||||
seq2  AAGTATA-GCACA--GATCT-CAGTCTGAGGCCAGCTTGGACTACACAGT  93

seq1  GAGAGCCCATGTGAAGAAAAGCTAACCCCAAAAGTTAGTGGCCAGTACTG  150
      ||||||||||||||   |||||| ||||||||||||||| ||||||||||
seq2  GAGAGCCCATGTGA--GAAAGCT-ACCCCAAAAGTTAGT-GCCAGTACTG  139

seq1  CTTCCATTTGCTTACTCTCTTGCCAAGGTTCAAGGTAAATTCTTAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTTGCTTACTCTCTTGCCAAGGTTCAAGGTAAATTCTTAGAAAG  189

seq1  GACTGGAAGTATGTGTGTGTGTGCACGCACATGTGTCCATGCCCCTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAGTATGTGTGTGTGTGCACGCACATGTGTCCATGCCCCTCTGT  239

seq1  AATAATTCAGGATGAAACTACAATATGGGGGCTGGAGAGATGGCTCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCAGGATGAAACTACAATATGGGGGCTGGAGAGATGGCTCAGTG  289

seq1  ATTAAGAACACTGACTGCTCTTCCAGAGGTCCCCATGTTCAATTCCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAACACTGACTGCTCTTCCAGAGGTCCCCATGTTCAATTCCCAGC  339

seq1  ACCCAGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCCCTTCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCCCTTCTGGT  389

seq1  GTGACTGAAGATAGCTACAGTATACTTATATACATAAATAATTCTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGAAGATAGCTACAGTATACTTATATACATAAATAATTCTAAAAA  439

seq1  TATAAAAAATAAAAAAACTACAATATATTCTCTTAACTGATATAATAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAATAAAAAAACTACAATATATTCTCTTAACTGATATAATAGAC  489

seq1  AAAGAAATTATTGTTGGTGGATAGCTTTCTAGTTTTAACATTTAATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTATTGTTGGTGGATAGCTTTCTAGTTTTAACATTTAATAAAA  539

seq1  ACCCAACTCACCCAGAACTTGGCAGAGGCTATGTAGAAGGGCTGACAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACTCACCCAGAACTTGGCAGAGGCTATGTAGAAGGGCTGACAAAT  589

seq1  ATGAAGTCTCCATATTCGATGGTTACTGTCACCTGACACTGCTGCCGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCTCCATATTCGATGGTTACTGTCACCTGACACTGCTGCCGCTT  639

seq1  TGTAAGCTGACAGTGACCAGGAGAGTGTGCTAACCAACAGGAACCACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCTGACAGTGACCAGGAGAGTGTGCTAACCAACAGGAACCACCCT  689

seq1  GACTAGTGACCTAAATTGTTGTTGGTATATTTACGCTTTCATTTCCAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTGACCTAAATTGTTGTTGGTATATTTACGCTTTCATTTCCAAGA  739

seq1  GTTGTAAAAATATATTTGAGTATGATTGTTTGTCGTTGTTATGTTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAAAATATATTTGAGTATGATTGTTTGTCGTTGTTATGTTCTCTG  789

seq1  TTGATGATGTTTTAAAGTAGGGTCTTGCAATGCATCCCAGGCTGCCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATGTTTTAAAGTAGGGTCTTGCAATGCATCCCAGGCTGCCCACA  839

seq1  ATCTTGAGATTCTCCTGCCTCAGCTTGTTGAGTGCTGGGATTACAGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGATTCTCCTGCCTCAGCTTGTTGAGTGCTGGGATTACAGAAGT  889

seq1  GTGCTTTATCTGTTTTCTTGGTTTTTGTTTTTGTTTTTTAACTTAACATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTATCTGTTTTCTTGGTTTTTGTTTTTGTTTTTTAACTTAACATA  939

seq1  TAAAGAGTAAAGAATCTCTTATGCATCTGAAAGAAAAGAGCAGCAGGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTAAAGAATCTCTTATGCATCTGAAAGAAAAGAGCAGCAGGAGA  989

seq1  GAGATAATCACAGCCAGGTGCACAGTCAGAAATGTAGCCTCTCACCGATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATCACAGCCAGGTGCACAGTCAGAAATGTAGCCTCTCACCGATC  1039

seq1  CAGCCACTGCTTTAGCAATCTCCAGACAACAACTCTACGAGGGAGGAGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTGCTTTAGCAATCTCCAGACAACAACTCTACGAGGGAGGAGGC  1089

seq1  ATTCACAGCAGTGGAATTC  1119
      ||||||||||| |||||||
seq2  ATTCACAGCAG-GGAATTC  1107