BAC Information

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BAC

Clone NameB6Ng01-222M13
Chromosome6 (Build37)
Map Location 144,557,586 - 144,679,806
singlet/doubletdoublet
Overlap gene4933425H06Rik, EG665149
Upstream geneSox5
Downstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222M13.bB6Ng01-222M13.g
ACCGA037706GA037707
length961619
definitionB6Ng01-222M13.b B6Ng01-222M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,557,586 - 144,558,545)(144,679,188 - 144,679,806)
sequence
gaattcttgagacagagagtccttttatagtcccaagacagcctgtaatt
catgtagctgaggctagcttcaaatttgaaatcttcccacctccatccca
agagcattttatcatttctaacaagagacaaatgggtcttcatgataaga
gacagcagggtaccagggacatctctagagggaagaaatgactatctaaa
cacatcatcactgagagacgtggagacagggaatagagatgtacttcctg
tggcgtcgaggaggctgcaatttcgctcttcgggatagggctgcctcccc
ctgcccactttgagcacagacttcccaccgctgaaactactgtaccctca
aacactgaaacaaactaacaaaacagctgtctcctcccagacacagatgc
tgaagtctttgccatggtctcaagggagggctcattcccacctttctgct
ccaagcctgcagtacctgccttagtaagacacattgtgcaaatagtattt
gtgaaagtgtctgtgtcctcatcaaactgtagaatgcttaccttgttggg
gggcacataaaacaggacctaaaagtagctcagtaagagagcaaaagagc
cccacactctgtcttcctgcccatgtttcttaagtcaaaaaagcaacaaa
aggctattctttaaagtgataaatgtacctctgatgtttatctgactcat
aatttggaaaagcacatggtgagggaaggactcttattctgaggagaatc
caggcctcagtgcccccaacaaggctagagtaagccgacactggcatcgt
ctgctttgtcttttcttcagtggaggaagctgacacacgagcatctgaat
aggaatttctgggaacgccatgcttcctgtgtgtcatgacactgcctact
cccacggtaaccaatcacaaagtcatttgctcagagcctgggggtgggat
gggggtgggga

gaattccgacctgagtttacgtccctgtttcaccgaggagggttgtaaaa
acatagaattatggtttttaaattttaatttatttatttacttatttatt
ttggataggcctgtttggttgctattagataccatgctcggctaggttta
gatggctattaaatatctagagtaatcaataaggactggaattattgtca
caagtggtgaatccctgatgtcctcagagactgaggaggctctcctttcc
ctttgcctgctacaattactgtattggcttctctgcatctctcttgtgcc
aagttcccccctcacaccaagttcccccccacaccaagttcccctcacac
cgagtttcccccacaccgagttcccccaccccaagttccccccacaccga
gttccccccacaccgagtttcccccacagcaagttccccccacaccgagt
tccccacacactgagtccccacacacacaccaagttccccaacaccactc
tcatcaccatcttcttgcacgcactccttctaactcttgactctgtgcct
attgccagttacaatcctcccacctactgggctgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144557586_144558545
seq2: B6Ng01-222M13.b_43_1003

seq1  GAATTCTTGAGACAGAGAGTCCTTTTATAGTCCCAAGACAGCCTGTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGACAGAGAGTCCTTTTATAGTCCCAAGACAGCCTGTAATT  50

seq1  CATGTAGCTGAGGCTAGCTTCAAATTTGAAATCTTCCCACCTCCATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCTGAGGCTAGCTTCAAATTTGAAATCTTCCCACCTCCATCCCA  100

seq1  AGAGCATTTTATCATTTCTAACAAGAGACAAATGGGTCTTCATGATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTTATCATTTCTAACAAGAGACAAATGGGTCTTCATGATAAGA  150

seq1  GACAGCAGGGTACCAGGGACATCTCTAGAGGGAAGAAATGACTATCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGGTACCAGGGACATCTCTAGAGGGAAGAAATGACTATCTAAA  200

seq1  CACATCATCACTGAGAGACGTGGAGACAGGGAATAGAGATGTACTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATCACTGAGAGACGTGGAGACAGGGAATAGAGATGTACTTCCTG  250

seq1  TGGCGTCGAGGAGGCTGCAATTTCGCTCTTCGGGATAGGGCTGCCTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCGAGGAGGCTGCAATTTCGCTCTTCGGGATAGGGCTGCCTCCCC  300

seq1  CTGCCCACTTTGAGCACAGACTTCCCACCGCTGAAACTACTGTACCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACTTTGAGCACAGACTTCCCACCGCTGAAACTACTGTACCCTCA  350

seq1  AACACTGAAACAAACTAACAAAACAGCTGTCTCCTCCCAGACACAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAAACAAACTAACAAAACAGCTGTCTCCTCCCAGACACAGATGC  400

seq1  TGAAGTCTTTGCCATGGTCTCAAGGGAGGGCTCATTCCCACCTTTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTTTGCCATGGTCTCAAGGGAGGGCTCATTCCCACCTTTCTGCT  450

seq1  CCAAGCCTGCAGTACCTGCCTTAGTAAGACACATTGTGCAAATAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGCAGTACCTGCCTTAGTAAGACACATTGTGCAAATAGTATTT  500

seq1  GTGAAAGTGTCTGTGTCCTCATCAAACTGTAGAATGCTTACCTTGTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTGTCTGTGTCCTCATCAAACTGTAGAATGCTTACCTTGTTGGG  550

seq1  GGGCACATAAAACAGGACCTAAAAGTAGCTCAGTAAGAGAGCAAAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATAAAACAGGACCTAAAAGTAGCTCAGTAAGAGAGCAAAAGAGC  600

seq1  CCCACACTCTGTCTTCCTGCCCATGTTTCTTAAGTCAAAAAAGCAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTCTGTCTTCCTGCCCATGTTTCTTAAGTCAAAAAAGCAACAAA  650

seq1  AGGCTATTCTTTAAAGTGATAAATGTACCTCTGATGTTTATCTGACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTCTTTAAAGTGATAAATGTACCTCTGATGTTTATCTGACTCAT  700

seq1  AATTTGGAAAAGCACATGGTGAGGGAAGGACTCTTATTCTGAGGAGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGAAAAGCACATGGTGAGGGAAGGACTCTTATTCTGAGGAGAATC  750

seq1  CAGGCCTCAGTGCCCCCAACAAGGCTAGAGTAAGCCGACACTGGCATCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCAGTGCCCCCAACAAGGCTAGAGTAAGCCGACACTGGCATCGT  800

seq1  CTGCTTTGTCTTTTCTTCAGTGGAGGAAGCTGACACACGAGCATCTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGTCTTTTCTTCAGTGGAGGAAGCTGACACACGAGCATCTGAAT  850

seq1  AGGAATTTCTGGGAACGCCATGCTTCCTGTGTGTCATGACACTGCCTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTCTGGGAACGCCATGCTTCCTGTGTGTCATGACACTGCCTACT  900

seq1  CCCACGGTAACCAATCACAAAGTCATTTGCTCAGAGCCTGGGGGTGGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGGTAACCAATCACAAAGTCATTTGCTCAGAGCCTGGGGGTGGGAT  950

seq1  -GGGGTGGGGA  960
       ||||||||||
seq2  GGGGGTGGGGA  961


seq1: chr6_144679188_144679806
seq2: B6Ng01-222M13.g_69_687 (reverse)

seq1  TCACACACACACACACACACACACACACACACACACAGCCCAGTAGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACACAGCCCAGTAGGTGG  50

seq1  GAGGATTGTAACTGGCAATAGGCACAGAGTCAAGAGTTAGAAGGAGTGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGTAACTGGCAATAGGCACAGAGTCAAGAGTTAGAAGGAGTGCG  100

seq1  TGCAAGAAGATGGTGATGAGAGTGGTGTTGGGGAACTTGGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAAGATGGTGATGAGAGTGGTGTTGGGGAACTTGGTGTGTGTGTG  150

seq1  GGGACTCAGTGTGTGGGGAACTCGGTGTGGGGGGAACTTGCTGTGGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCAGTGTGTGGGGAACTCGGTGTGGGGGGAACTTGCTGTGGGGGA  200

seq1  AACTCGGTGTGGGGGGAACTCGGTGTGGGGGGAACTTGGGGTGGGGGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGGTGTGGGGGGAACTCGGTGTGGGGGGAACTTGGGGTGGGGGAAC  250

seq1  TCGGTGTGGGGGAAACTCGGTGTGAGGGGAACTTGGTGTGGGGGGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTGGGGGAAACTCGGTGTGAGGGGAACTTGGTGTGGGGGGGAACT  300

seq1  TGGTGTGAGGGGGGAACTTGGCACAAGAGAGATGCAGAGAAGCCAATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAGGGGGGAACTTGGCACAAGAGAGATGCAGAGAAGCCAATACA  350

seq1  GTAATTGTAGCAGGCAAAGGGAAAGGAGAGCCTCCTCAGTCTCTGAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGTAGCAGGCAAAGGGAAAGGAGAGCCTCCTCAGTCTCTGAGGAC  400

seq1  ATCAGGGATTCACCACTTGTGACAATAATTCCAGTCCTTATTGATTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGATTCACCACTTGTGACAATAATTCCAGTCCTTATTGATTACTC  450

seq1  TAGATATTTAATAGCCATCTAAACCTAGCCGAGCATGGTATCTAATAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTAATAGCCATCTAAACCTAGCCGAGCATGGTATCTAATAGCA  500

seq1  ACCAAACAGGCCTATCCAAAATAAATAAGTAAATAAATAAATTAAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGGCCTATCCAAAATAAATAAGTAAATAAATAAATTAAAATTT  550

seq1  AAAAACCATAATTCTATGTTTTTACAACCCTCCTCGGTGAAACAGGGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCATAATTCTATGTTTTTACAACCCTCCTCGGTGAAACAGGGACG  600

seq1  TAAACTCAGGTCGGAATTC  619
      |||||||||||||||||||
seq2  TAAACTCAGGTCGGAATTC  619


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