BAC Information

Click to search

BAC

Clone NameB6Ng01-223H04
Chromosome6 (Build37)
Map Location 9,373,086 - 9,477,886
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100036521, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223H04.bB6Ng01-223H04.g
ACCGA038187GA038188
length1,1061,171
definitionB6Ng01-223H04.b B6Ng01-223H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,476,791 - 9,477,886)(9,373,086 - 9,374,256)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatataattcctgtttgttttctaatgagagagggcaagaaataatatg
gattcggtagttggcaaggtggagagaccctgggagggggtgggtgagcg
gaaactgtaatcataaaatattgtgttaaaaaaaactattttcaatttta
aaagaaaaatgcattgcctcctttgtgttatccatgactaagcaatgttt
tattttttccctctctttgtgttcatccttctctcttctatgggactggg
aaaggcaaagccacatccccatatatgtggagaaaagagctttgaagtat
tcataaactgcaataggaatttacaactgtaactttcacttagaaagatt
ctaaaagcttatatcgatcacacagagactacaacaagtttatgtatctg
tgaattcaatgcaatacgatgaaaagtcaatatcatttaaccttctcaaa
catctagtatgtagaatttgatcagatatgctaaagaaaataagaaggaa
gaaatataggttttggtcttgccaaagcaagtcacatcatggccttcatg
aagagtataaagttttggtttccttatttgaaaactatagttcatgttgc
cttttctgttcccctttgtaactgatgaagacatcatgaagagtgtcacc
taatcttcctttgtcctagttcattgcacaaacaaataaaaacattcctc
cctctttaaaacaaaatgatgttttaacaaagtcagaccttctttactca
agaagtgagttcctgtcattgggaaatgattgaaatgcatttctacagct
acacagtctgctttcctcatttattttttactttcctcagttgctcagca
gccctcatttctgtctctattattctttctcctttataaaaactatggtt
tcaatagggggaaataaggactaagtttttcaaccagcccataaattttc
aaccattccttgtagcacaatacaaggtaaggattcttcgactgaaatac
tctttt

gaattcctgctattttgggtaatgctcaggacaattctaatagcagtatt
ctgtacccccgccccaaacaaaaaccctgccaaatgggaagacacaaaca
tctctacttgaaaataagaattttttcttttcttttctttttttaagtgc
tgctattaaacccagcatgggagacgatctgagccaggatcttcatcaat
cagattaactactttccaagatgagaacagacgaggcacagtgtgaggct
gagcagatatttatcaaaagccatattaataaccacgttcagcattttcc
tgacagttccatccgaggttccatgtttaacatttgagtatcatatgttt
ttgtcaagatgaggccgctaagaacatcaattaattaattcctttgaagt
acagttcagaaaggtaataaagtaaccagtccctaaggccacagccagta
gtggtaagcaacattctggagctagacaatttgttaccttggaaagaaat
taaaagaaaaatgtcttcttggtatcatctgaaaataagttctgacccat
ttttaatggtcatatggtatatgtgcttctatatgtgtagccacaaatgt
gtcatgaacagtctatgtccattattgtttatccagctcagatatacctc
atttactaggctacaggctaacaacaacaacaaaaaggaatgaattcttt
aatttgctttatctaaatggggtggaaatagggcaaaattaaatttagaa
aaaaataatgagaacaatttcatattattaagattatcaaccacactcca
gtgtttgagaaaattaatttgggtggattaaaaaatgccagctcataaaa
attaacacttcacctcatgcaattcagtgtatagaagaaatttatggctt
gtcacagcaatatgtagggtacatatattcaaatatatgttcctccattt
tcagaggcacatcacaggcactgctaatgtagttctctttttgatgatgt
catgtcagattactataaactcagagtacccttgtgtagccaggagaaca
gctaaagtgaagacatggaaatgaagttagcacaaagactagcatggtgt
taggttcagactcatctccacacagggattcttcagtctggaagtctatt
ctatgaaatcattagaatggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9476791_9477886
seq2: B6Ng01-223H04.b_42_1147 (reverse)

seq1  AAAAGAGTATTTTAAGTGAAGAATCTTTAAC-TGTATTGTGCTACAAAAG  49
      |||||||||||| |   |||||||| ||| | ||||||||||||| || |
seq2  AAAAGAGTATTTCAGTCGAAGAATCCTTACCTTGTATTGTGCTAC-AAGG  49

seq1  AATGGTTGAAA--TTTTTGGCTGGTTG-AAAACTTAGT-CTTATT--CCC  93
      |||||||||||  || | ||||||||| |||||||||| ||||||  |||
seq2  AATGGTTGAAAATTTATGGGCTGGTTGAAAAACTTAGTCCTTATTTCCCC  99

seq1  CTAATGGAAACATAGTTTTTAT-AAGGAGAAAG-ATAATAGAAGACAG-A  140
      ||| || || |||||||||||| |||||||||| ||||||| |||||| |
seq2  CTATTGAAACCATAGTTTTTATAAAGGAGAAAGAATAATAG-AGACAGAA  148

seq1  ATGA-GGCTGCTGAGCAACTGAGG-AAGTAAAAAATAAATGAGGAAAGCA  188
      |||| ||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGAGGGCTGCTGAGCAACTGAGGAAAGTAAAAAATAAATGAGGAAAGCA  198

seq1  GACTGTGTAGCTGTAAGAATGCATTTCAATCATTTCCCAATGACAGGAAC  238
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  GACTGTGTAGCTGTAGAAATGCATTTCAATCATTTCCCAATGACAGGAAC  248

seq1  TCACTTCTTGAGTAAAGAAGGTCTGACTTTGTTAAAACATCATTTTGTTT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCTTGAGTAAAGAAGGTCTGACTTTGTTAAAACATCATTTTGTTT  298

seq1  TAAAGAGGGAGGAATGTTTTTATTTGTTTGTGCAATGAACTAGGACAAAG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGGGAGGAATGTTTTTATTTGTTTGTGCAATGAACTAGGACAAAG  348

seq1  GAAGATTAGGTGACACTCTTCATGATGTCTTCATCAGTTACAAAGGGGAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTAGGTGACACTCTTCATGATGTCTTCATCAGTTACAAAGGGGAA  398

seq1  CAGAAAAGGCAACATGAACTATAGTTTTCAAATAAGGAAACCAAAACTTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAGGCAACATGAACTATAGTTTTCAAATAAGGAAACCAAAACTTT  448

seq1  ATACTCTTCATGAAGGCCATGATGTGACTTGCTTTGGCAAGACCAAAACC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTTCATGAAGGCCATGATGTGACTTGCTTTGGCAAGACCAAAACC  498

seq1  TATATTTCTTCCTTCTTATTTTCTTTAGCATATCTGATCAAATTCTACAT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCTTCCTTCTTATTTTCTTTAGCATATCTGATCAAATTCTACAT  548

seq1  ACTAGATGTTTGAGAAGGTTAAATGATATTGACTTTTCATCGTATTGCAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATGTTTGAGAAGGTTAAATGATATTGACTTTTCATCGTATTGCAT  598

seq1  TGAATTCACAGATACATAAACTTGTTGTAGTCTCTGTGTGATCGATATAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCACAGATACATAAACTTGTTGTAGTCTCTGTGTGATCGATATAA  648

seq1  GCTTTTAGAATCTTTCTAAGTGAAAGTTACAGTTGTAAATTCCTATTGCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTAGAATCTTTCTAAGTGAAAGTTACAGTTGTAAATTCCTATTGCA  698

seq1  GTTTATGAATACTTCAAAGCTCTTTTCTCCACATATATGGGGATGTGGCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAATACTTCAAAGCTCTTTTCTCCACATATATGGGGATGTGGCT  748

seq1  TTGCCTTTCCCAGTCCCATAGAAGAGAGAAGGATGAACACAAAGAGAGGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTCCCAGTCCCATAGAAGAGAGAAGGATGAACACAAAGAGAGGG  798

seq1  AAAAAATAAAACATTGCTTAGTCATGGATAACACAAAGGAGGCAATGCAT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAACATTGCTTAGTCATGGATAACACAAAGGAGGCAATGCAT  848

seq1  TTTTCTTTTAAAATTGAAAATAGTTTTTTTTAACACAATATTTTATGATT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTAAAATTGAAAATAGTTTTTTTTAACACAATATTTTATGATT  898

seq1  ACAGTTTCCGCTCACCCACCCCCTCCCAGGGTCTCTCCACCTTGCCAACT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCCGCTCACCCACCCCCTCCCAGGGTCTCTCCACCTTGCCAACT  948

seq1  ACCGAATCCATATTATTTCTTGCCCTCTCTCATTAGAAAACAAACAGGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATCCATATTATTTCTTGCCCTCTCTCATTAGAAAACAAACAGGAA  998

seq1  TTATATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGA  1048

seq1  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  1098

seq1  AAGAATTC  1096
      ||||||||
seq2  AAGAATTC  1106


seq1: chr6_9373086_9374256
seq2: B6Ng01-223H04.g_65_1235

seq1  GAATTCCTGCTATTTTGGGTAATGCTCAGGACAATTCTAATAGCAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTATTTTGGGTAATGCTCAGGACAATTCTAATAGCAGTATT  50

seq1  CTGTACCCCCGCCCCAAACAAAAACCCTGCCAAATGGGAAGACACAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCCCCGCCCCAAACAAAAACCCTGCCAAATGGGAAGACACAAACA  100

seq1  TCTCTACTTGAAAATAAGAATTTTTTCTTTTCTTTTCTTTTTTTAAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTGAAAATAAGAATTTTTTCTTTTCTTTTCTTTTTTTAAGTGC  150

seq1  TGCTATTAAACCCAGCATGGGAGACGATCTGAGCCAGGATCTTCATCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAAACCCAGCATGGGAGACGATCTGAGCCAGGATCTTCATCAAT  200

seq1  CAGATTAACTACTTTCCAAGATGAGAACAGACGAGGCACAGTGTGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAACTACTTTCCAAGATGAGAACAGACGAGGCACAGTGTGAGGCT  250

seq1  GAGCAGATATTTATCAAAAGCCATATTAATAACCACGTTCAGCATTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGATATTTATCAAAAGCCATATTAATAACCACGTTCAGCATTTTCC  300

seq1  TGACAGTTCCATCCGAGGTTCCATGTTTAACATTTGAGTATCATATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTCCATCCGAGGTTCCATGTTTAACATTTGAGTATCATATGTTT  350

seq1  TTGTCAAGATGAGGCCGCTAAGAACATCAATTAATTAATTCCTTTGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGATGAGGCCGCTAAGAACATCAATTAATTAATTCCTTTGAAGT  400

seq1  ACAGTTCAGAAAGGTAATAAAGTAACCAGTCCCTAAGGCCACAGCCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCAGAAAGGTAATAAAGTAACCAGTCCCTAAGGCCACAGCCAGTA  450

seq1  GTGGTAAGCAACATTCTGGAGCTAGACAATTTGTTACCTTGGAAAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGCAACATTCTGGAGCTAGACAATTTGTTACCTTGGAAAGAAAT  500

seq1  TAAAAGAAAAATGTCTTCTTGGTATCATCTGAAAATAAGTTCTGACCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAAAATGTCTTCTTGGTATCATCTGAAAATAAGTTCTGACCCAT  550

seq1  TTTTAATGGTCATATGGTATATGTGCTTCTATATGTGTAGCCACAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGGTCATATGGTATATGTGCTTCTATATGTGTAGCCACAAATGT  600

seq1  GTCATGAACAGTCTATGTCCATTATTGTTTATCCAGCTCAGATATACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAACAGTCTATGTCCATTATTGTTTATCCAGCTCAGATATACCTC  650

seq1  ATTTACTAGGCTACAGGCTAACAACAACAACAAAAAGGAATGAATTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAGGCTACAGGCTAACAACAACAACAAAAAGGAATGAATTCTTT  700

seq1  AATTTGCTTTATCTAAATGGGGTGGAAATAGGGCAAAATTAAATTTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTTTATCTAAATGGGGTGGAAATAGGGCAAAATTAAATTTAGAA  750

seq1  AAAAATAATGAGAACAATTTCATATTATTAAGATTATCAACCACACTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAATGAGAACAATTTCATATTATTAAGATTATCAACCACACTCCA  800

seq1  GTGTTTGAGAAAATTAATTT-GGTGGATTAAAAAATGCCAGCTCATAAAA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTGTTTGAGAAAATTAATTTGGGTGGATTAAAAAATGCCAGCTCATAAAA  850

seq1  ATTAACACTTCACCTCATGCAATTCAGTGTATAGAAGAAATTTATGGCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACTTCACCTCATGCAATTCAGTGTATAGAAGAAATTTATGGCTT  900

seq1  GTCACAGCAATATGTAGGGTACATATATTCAAATATATGTTCCTCCATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCAATATGTAGGGTACATATATTCAAATATATGTTCCTCCATTT  950

seq1  TCAGAGGCACATCACAGGCACTGCTAATGTAGTTCTCTTTTTGATGATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCACATCACAGGCACTGCTAATGTAGTTCTCTTTTTGATGATGT  1000

seq1  CATGTCAGATTACTATAAACTCAGAGTACCCTTGTGTAAGCCAGGAGACA  1049
      ||||||||||||||||||||||||||||||||||||| ||||||||||  
seq2  CATGTCAGATTACTATAAACTCAGAGTACCCTTGTGT-AGCCAGGAGAAC  1049

seq1  AGCTAAAGTG-AGACAT-GAAATG-AGGTAGCACAAAAAGACTAGCAT-G  1095
      |||||||||| |||||| |||||| || ||||||  |||||||||||| |
seq2  AGCTAAAGTGAAGACATGGAAATGAAGTTAGCAC--AAAGACTAGCATGG  1097

seq1  TGTTA-GTTCAGACTCATCT-CACACAGGGTATTTCTTCAGTCTGGAAGT  1143
      ||||| |||||||||||||| |||||||||   |||||||||||||||||
seq2  TGTTAGGTTCAGACTCATCTCCACACAGGG--ATTCTTCAGTCTGGAAGT  1145

seq1  CTAATTCCTATG-AATCATTTAGAATGGC  1171
      |||  | ||||| ||||| ||||||||||
seq2  CTA--TTCTATGAAATCA-TTAGAATGGC  1171


| Home | SequenceCutter | Blast | Download |