BAC Information

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BAC

Clone NameB6Ng01-224G16
Chromosome6 (Build37)
Map Location 34,645,948 - 34,802,039
singlet/doubletdoublet
Overlap geneCald1, Agbl3
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184
Downstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224G16.bB6Ng01-224G16.g
ACCGA038884GA038885
length1,2161,038
definitionB6Ng01-224G16.b B6Ng01-224G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,645,948 - 34,647,170)(34,801,009 - 34,802,039)
sequence
gaattcttaactatttgtagcaggactgtaggacagtgtaacttggaact
atatataaataaaggatttgattaacatgtgaactatgtaagctacattc
caaggcttcatttttaaacatcagagaacgcgactttgtaaatgtttaaa
aatgacgctagaaacattcacttgtattggaaaacaatcttcctgatcag
aaggagtttttcccttcgtttgtttctttaactcacacctgatgcttctg
ttggtctggtgaaagttaccaggtatacttgcatatttttcaagactgtt
aaaaggtcttgtcattcatactggcttcttcttcttctagttattttaaa
ttggtgagatctctgatattacatttaaggttagtactgaatgactaagt
tgaaaatatgagtgtatttttccatctcaatggctgcctaccttacatat
agttcctttgttggaataaaaatcttggtaaagtacacaccagtcactat
aaatagcactgtgcttgggcattcaggagagtctccagagagtatatttt
aaacccacattgtttagaataggaaattttcctggtgttcatattttcca
ttgtggtgacatggattgtcccctgtcacacatcttctctggctcccgtc
ttcctgtgccacttaggaatcaaactagtagattccagaagagtattcaa
tatgtgcttccattttttttctatggataccctgggaattctgcatacat
cttggggctctccaaatgaagcctcagagaactcacagagccagcatccg
caactaggcaacaaaagagggctttctttctggagatggatgctctggtg
cgcctgcttagaggaacagtgtcaattccacttttgattcccacagaaac
cttatgctgttggtgggattttttagggggaactcaagaggcgaatatgg
aaaaataactgagcagaagtggagtgagcacaacaggcagcatgaattga
tggtttaccattgctggtccagaagcaagggcatcatcaggtctagttac
acgcactttccagaaactgtggcagctcagtattatggaagctctgccac
tcctctcaacagttttctctgtttcctctaatcaatgctgttgttaacct
tatcttttaatctaggggggacctctctagggaagatgcaatgccctcct
ccttagtagtttctct
gaattctatttgctaatatgattaaatttcttgatttttaaaattttgat
tctctctttgactgattttggtatcatgccaatagtagcttcataaagtg
aactatgaattattttctcattttctataagtcactgcagaactggtatt
aattattcttaaatctttggtttttaacctgtgggttgcaactctttggt
gtcatatatcagatatcctgcatattatatatttacaatttataacagta
gcaaaattactgttatgaagtagcagtgaaataattttatggctgggggc
caccacaacatgaagaactgtgttaaagggttacagcatagagtgaaaac
cacttctttaaatgcttgatgaaattgtgctgttaaaccatatggccaat
gagattcctttggggctgactaaaattatgaattcagattttatgtacat
aaacacaaacatgtaacagtaaggaaaggaggtcatgaatttcagaggga
cgtgggtgggacacgagaggagttggacaagggaagggtgggaaggatgt
acatgcaggactcatgagaaaaaaaaccctctgaaataaaagccaagcta
cagggggcatgaaaacattctattccacagagtgtaattgtgtgtgtata
tgcacactctgaggaaatattcttctgtaacatcctatttgcactttttg
tgattttctctgtgtgttcttcagcatgtgtgtgtatggcatgtgtgtgt
atgtgggtgcacatgcatatctacaccacagggcaacttcaagtgtcatg
cctcatattctatctccccatctcccactcacttttcaacaggctgtcct
gaccttgaagcttgccatggttcagtaaattggcttgggtcaatgagccc
tagttgatctacctgtctctgccttctgggtgctgggatacatggaaccc
cttcccccttttaaaaaacatgggttggggatgagtgcagtccctcgttg
ctcacagctgagcttacgcccctagcctgattctgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34645948_34647170
seq2: B6Ng01-224G16.b_45_1260

seq1  GAATTCTTAACTATTTGTAGCAGGACTGTAGGACAGTGTAACTTGGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTATTTGTAGCAGGACTGTAGGACAGTGTAACTTGGAACT  50

seq1  ATATATAAATAAAGGATTTGATTAACATGTGAACTATGTAAGCTACATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATAAAGGATTTGATTAACATGTGAACTATGTAAGCTACATTC  100

seq1  CAAGGCTTCATTTTTAAACATCAGAGAACGCGACTTTGTAAATGTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTCATTTTTAAACATCAGAGAACGCGACTTTGTAAATGTTTAAA  150

seq1  AATGACGCTAGAAACATTCACTTGTATTGGAAAACAATCTTCCTGATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACGCTAGAAACATTCACTTGTATTGGAAAACAATCTTCCTGATCAG  200

seq1  AAGGAGTTTTTCCCTTCGTTTGTTTCTTTAACTCACACCTGATGCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTTTTCCCTTCGTTTGTTTCTTTAACTCACACCTGATGCTTCTG  250

seq1  TTGGTCTGGTGAAAGTTACCAGGTATACTTGCATATTTTTCAAGACTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGGTGAAAGTTACCAGGTATACTTGCATATTTTTCAAGACTGTT  300

seq1  AAAAGGTCTTGTCATTCATACTGGCTTCTTCTTCTTCTAGTTATTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCTTGTCATTCATACTGGCTTCTTCTTCTTCTAGTTATTTTAAA  350

seq1  TTGGTGAGATCTCTGATATTACATTTAAGGTTAGTACTGAATGACTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGATCTCTGATATTACATTTAAGGTTAGTACTGAATGACTAAGT  400

seq1  TGAAAATATGAGTGTATTTTTCCATCTCAATGGCTGCCTACCTTACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATGAGTGTATTTTTCCATCTCAATGGCTGCCTACCTTACATAT  450

seq1  AGTTCCTTTGTTGGAATAAAAATCTTGGTAAAGTACACACCAGTCACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTTGTTGGAATAAAAATCTTGGTAAAGTACACACCAGTCACTAT  500

seq1  AAATAGCACTGTGCTTGGGCATTCAGGAGAGTCTCCAGAGAGTATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCACTGTGCTTGGGCATTCAGGAGAGTCTCCAGAGAGTATATTTT  550

seq1  AAACCCACATTGTTTAGAATAGGAAATTTTCCTGGTGTTCATATTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACATTGTTTAGAATAGGAAATTTTCCTGGTGTTCATATTTTCCA  600

seq1  TTGTGGTGACATGGATTGTCCCCTGTCACACATCTTCTCTGGCTCCCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGACATGGATTGTCCCCTGTCACACATCTTCTCTGGCTCCCGTC  650

seq1  TTCCTGTGCCACTTAGGAATCAAACTAGTAGATTCCAGAAGAGTATTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGCCACTTAGGAATCAAACTAGTAGATTCCAGAAGAGTATTCAA  700

seq1  TATGTGCTTCCATTTTTTTTCTATGGATACCCTGGGAATTCTGCATACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTCCATTTTTTTTCTATGGATACCCTGGGAATTCTGCATACAT  750

seq1  CTTGGGGCTCTCCAAATGAAGCCTCAGAGAACTCACAGAGCCAGCATCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCTCTCCAAATGAAGCCTCAGAGAACTCACAGAGCCAGCATCCG  800

seq1  CAACTAGGCAACAAAAGAGGGCTTTCTTTCTGGAGATGGATGCTCTGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAGGCAACAAAAGAGGGCTTTCTTTCTGGAGATGGATGCTCTGGTG  850

seq1  CGCCTGCTTAGAGGAACAGTGTCAATTCCACTTTTGATTCCCACAGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGCTTAGAGGAACAGTGTCAATTCCACTTTTGATTCCCACAGAAAC  900

seq1  CTTATGCTGTTGGTGGGATTTTTTAGGGGGAACTCAAGAGGCGAATATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCTGTTGGTGGGATTTTTTAGGGGGAACTCAAGAGGCGAATATGG  950

seq1  -AAAATAACTGAGCAGGAAGT-GAGTGAGCAC-ACAGGCAGCATGAAATG  997
       |||||||||||||| ||||| |||||||||| |||||||||||||| ||
seq2  AAAAATAACTGAGCA-GAAGTGGAGTGAGCACAACAGGCAGCATGAATTG  999

seq1  ATGGGTTACCA-TGCTGGTTCCAAGAGCAAGGGCATCATCAGGTCTAGTT  1046
      |||| |||||| |||||| ||||  |||||||||||||||||||||||||
seq2  ATGGTTTACCATTGCTGG-TCCAGAAGCAAGGGCATCATCAGGTCTAGTT  1048

seq1  ACACGGCACCTTTCCCAAGACACTGTTGGCAGCTCCAGTATATGGGAAGC  1096
      |||| ||| ||||||  ||| |||| |||||||| ||||||   ||||||
seq2  ACAC-GCA-CTTTCC--AGAAACTG-TGGCAGCT-CAGTATTATGGAAGC  1092

seq1  TCTGCCCACTCCTTCCTCAAACAG-TTTCTCTGTTT-CTCTAATCAGTGC  1144
      |||| ||||||||  ||| ||||| ||||||||||| ||||||||| |||
seq2  TCTG-CCACTCCT--CTC-AACAGTTTTCTCTGTTTCCTCTAATCAATGC  1138

seq1  TGTTGTGTAAACCTTTATTTTTTTTATTTTTAGTGGGGGACC-CTCTCTG  1193
      |||||| |||  | |||| ||||     | ||| |||||||| ||||  |
seq2  TGTTGT-TAA--CCTTATCTTTT---AATCTAG-GGGGGACCTCTCTAGG  1181

seq1  GGAGATGCAATG-CTTCCTCTAT----GTTTCTCT  1223
      | |||||||||| | |||||  |    ||||||||
seq2  GAAGATGCAATGCCCTCCTCCTTAGTAGTTTCTCT  1216

seq1: chr6_34801009_34802039
seq2: B6Ng01-224G16.g_66_1103 (reverse)

seq1  CTACAG-ATCAGGCTAGGGGCGT-AGCTCAGCTGTGAGC-ACGAGGGACC  47
      |||||| |||||||||||||||| ||||||||||||||| |||||||| |
seq2  CTACAGAATCAGGCTAGGGGCGTAAGCTCAGCTGTGAGCAACGAGGGA-C  49

seq1  TGCACTTCATTCCCAAACCCATG-TTTTTAAAAGGGGGAAGGGG-TCCAT  95
      ||||| ||| |||| |||||||| |||||||||||||||||||| |||||
seq2  TGCAC-TCA-TCCCCAACCCATGTTTTTTAAAAGGGGGAAGGGGTTCCAT  97

seq1  GTAATCCCAGCACCCAGGAGGCAGAGACAGGTAGATCACCTAGGGCTCAT  145
      || |||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GT-ATCCCAGCACCCAGAAGGCAGAGACAGGTAGATCAACTAGGGCTCAT  146

seq1  TGA-CCAAGCCAATTTACTG-ACCATGGCAAGC-TCCAGGTCA-GACAGC  191
      ||| |||||||||||||||| |||||||||||| || |||||| ||||||
seq2  TGACCCAAGCCAATTTACTGAACCATGGCAAGCTTCAAGGTCAGGACAGC  196

seq1  CTGTTG-AAAGTGAGTGGGAGATGGGGAGATAGAATATGAGGCATGACAC  240
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAAAGTGAGTGGGAGATGGGGAGATAGAATATGAGGCATGACAC  246

seq1  TTGAAGTTGCCCTGTGGTGTAGATATGCATGTGCACCCACATACACACAC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTGCCCTGTGGTGTAGATATGCATGTGCACCCACATACACACAC  296

seq1  ATGCCATACACACACATGCTGAAGAACACACAGAGAAAATCACAAAAAGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATACACACACATGCTGAAGAACACACAGAGAAAATCACAAAAAGT  346

seq1  GCAAATAGGATGTTACAGAAGAATATTTCCTCAGAGTGTGCATATACACA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAGGATGTTACAGAAGAATATTTCCTCAGAGTGTGCATATACACA  396

seq1  CACAATTACACTCTGTGGAATAGAATGTTTTCATG-CCCCTGTAGCTTGG  439
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACAATTACACTCTGTGGAATAGAATGTTTTCATGCCCCCTGTAGCTTGG  446

seq1  CTTTTATTTCAGAGGGTTTTTTTTCTCATGAGTCCTGCATGTACATCCTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTCAGAGGGTTTTTTTTCTCATGAGTCCTGCATGTACATCCTT  496

seq1  CCCACCCTTCCCTTGTCCAACTCCTCTCGTGTCCCACCCACGTCCCTCTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTTCCCTTGTCCAACTCCTCTCGTGTCCCACCCACGTCCCTCTG  546

seq1  AAATTCATGACCTCCTTTCCTTACTGTTACATGTTTGTGTTTATGTACAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCATGACCTCCTTTCCTTACTGTTACATGTTTGTGTTTATGTACAT  596

seq1  AAAATCTGAATTCATAATTTTAGTCAGCCCCAAAGGAATCTCATTGGCCA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGAATTCATAATTTTAGTCAGCCCCAAAGGAATCTCATTGGCCA  646

seq1  TATGGTTTAACAGCACAATTTCATCAAGCATTTAAAGAAGTGGTTTTCAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTAACAGCACAATTTCATCAAGCATTTAAAGAAGTGGTTTTCAC  696

seq1  TCTATGCTGTAACCCTTTAACACAGTTCTTCATGTTGTGGTGGCCCCCAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTGTAACCCTTTAACACAGTTCTTCATGTTGTGGTGGCCCCCAG  746

seq1  CCATAAAATTATTTCACTGCTACTTCATAACAGTAATTTTGCTACTGTTA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATTATTTCACTGCTACTTCATAACAGTAATTTTGCTACTGTTA  796

seq1  TAAATTGTAAATATATAATATGCAGGATATCTGATATATGACACCAAAGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTAAATATATAATATGCAGGATATCTGATATATGACACCAAAGA  846

seq1  GTTGCAACCCACAGGTTAAAAACCAAAGATTTAAGAATAATTAATACCAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAACCCACAGGTTAAAAACCAAAGATTTAAGAATAATTAATACCAG  896

seq1  TTCTGCAGTGACTTATAGAAAATGAGAAAATAATTCATAGTTCACTTTAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGTGACTTATAGAAAATGAGAAAATAATTCATAGTTCACTTTAT  946

seq1  GAAGCTACTATTGGCATGATACCAAAATCAGTCAAAGAGAGAATCAAAAT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTACTATTGGCATGATACCAAAATCAGTCAAAGAGAGAATCAAAAT  996

seq1  TTTAAAAATCAAGAAATTTAATCATATTAGCAAATAGAATTC  1031
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCAAGAAATTTAATCATATTAGCAAATAGAATTC  1038