BAC Information

Click to search

BAC

Clone NameB6Ng01-224H17
Chromosome6 (Build37)
Map Location 34,645,948 - 34,802,039
singlet/doubletdoublet
Overlap geneCald1, Agbl3
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184
Downstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224H17.bB6Ng01-224H17.g
ACCGA038928GA038929
length1,1291,033
definitionB6Ng01-224H17.b B6Ng01-224H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,645,948 - 34,647,079)(34,801,009 - 34,802,039)
sequence
gaattcttaactatttgtagcaggactgtaggacagtgtaacttggaact
atatataaataaaggatttgattaacatgtgaactatgtaagctacattc
caaggcttcatttttaaacatcagagaacgcgactttgtaaatgtttaaa
aatgacgctagaaacattcacttgtattggaaaacaatcttcctgatcag
aaggagtttttcccttcgtttgtttctttaactcacacctgatgcttctg
ttggtctggtgaaagttaccaggtatacttgcatatttttcaagactgtt
aaaaggtcttgtcattcatactggcttcttcttcttctagttattttaaa
ttggtgagatctctgatattacatttaaggttagtactgaatgactaagt
tgaaaatatgagtgtatttttccatctcaatggctgcctaccttacatat
agttcctttgttggaataaaaatcttggtaaagtacacaccagtcactat
aaatagcactgtgcttgggcattcaggagagtctccagagagtatatttt
aaacccacattgtttagaataggaaattttcctggtgttcatattttcca
ttgtggtgacatggattgtcccctgtcacacatcttctctggctcccgtc
ttcctgtgccacttaggaatcaaactagtagattccagaagagtattcaa
tatgtgcttccatttttttttctatggataccctgggaattctgcataca
tcttggggctctccaaatgaagcctcagagaactcacagagccagcatcc
gcaactaggcaacaaaagagggctttctttctggagatggatgctctggt
gcgcctgcttagaggaacagtgtcaattccacttttgatcccacagaaac
cttatgctgttggtgggatttttagggggtactcaagaggcgaatatgga
aatactgagcaggaagtgagtgagcacacaggcagcattgaaatgatggg
ttaccatgctgggtccaagagcagggcatcatcaggttctagtacacggc
accttttcccaagacacctgttgccagctccagtatattggtagctctgg
cccactcctcctcaccggttctctgtttc
gaattctatttgctaatatgattaaatttcttgatttttaaaattttgat
tctctctttgactgattttggtatcatgccaatagtagcttcataaagtg
aactatgaattattttctcattttctataagtcactgcagaactggtatt
aattattcttaaatctttggtttttaacctgtgggttgcaactctttggt
gtcatatatcagatatcctgcatattatatatttacaatttataacagta
gcaaaattactgttatgaagtagcagtgaaataattttatggctgggggc
caccacaacatgaagaactgtgttaaagggttacagcatagagtgaaaac
cacttctttaaatgcttgatgaaattgtgctgttaaaccatatggccaat
gagattcctttggggctgactaaaattatgaattcagattttatgtacat
aaacacaaacatgtaacagtaaggaaaggaggtcatgaatttcagaggga
cgtgggtgggacacgagaggagttggacaagggaagggtgggaaggatgt
acatgcaggactcatgagaaaaaaaaccctctgaaataaaagccaagcta
caggggcatgaaaacattctattccacagagtgtaattgtgtgtgtatat
gcacactctgaggaaatattcttctgtaacatcctatttgcactttttgt
gattttctctgtgtgttcttcagcatgtgtgtgtatggcatgtgtgtgta
tgtgggtgcacatgcatatctacaccacagggcaacttcaagtgtcatgc
ctcatattctatctccccatctcccactcactttcaacaggctgtctgac
ctggagcttgccatggtcagtaaattggcttggtcaatgagccctagtga
tctaccctgtctctgcctcctgggtgctgggattaacatggaccccttcc
cctttaaaacatggggtttggggaatgaagtgcagtcctctcgtgcttca
acagctgagctacgcccctagcctgatctgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34645948_34647079
seq2: B6Ng01-224H17.b_49_1177

seq1  GAATTCTTAACTATTTGTAGCAGGACTGTAGGACAGTGTAACTTGGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTATTTGTAGCAGGACTGTAGGACAGTGTAACTTGGAACT  50

seq1  ATATATAAATAAAGGATTTGATTAACATGTGAACTATGTAAGCTACATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAAATAAAGGATTTGATTAACATGTGAACTATGTAAGCTACATTC  100

seq1  CAAGGCTTCATTTTTAAACATCAGAGAACGCGACTTTGTAAATGTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTCATTTTTAAACATCAGAGAACGCGACTTTGTAAATGTTTAAA  150

seq1  AATGACGCTAGAAACATTCACTTGTATTGGAAAACAATCTTCCTGATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACGCTAGAAACATTCACTTGTATTGGAAAACAATCTTCCTGATCAG  200

seq1  AAGGAGTTTTTCCCTTCGTTTGTTTCTTTAACTCACACCTGATGCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTTTTTCCCTTCGTTTGTTTCTTTAACTCACACCTGATGCTTCTG  250

seq1  TTGGTCTGGTGAAAGTTACCAGGTATACTTGCATATTTTTCAAGACTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGGTGAAAGTTACCAGGTATACTTGCATATTTTTCAAGACTGTT  300

seq1  AAAAGGTCTTGTCATTCATACTGGCTTCTTCTTCTTCTAGTTATTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCTTGTCATTCATACTGGCTTCTTCTTCTTCTAGTTATTTTAAA  350

seq1  TTGGTGAGATCTCTGATATTACATTTAAGGTTAGTACTGAATGACTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGATCTCTGATATTACATTTAAGGTTAGTACTGAATGACTAAGT  400

seq1  TGAAAATATGAGTGTATTTTTCCATCTCAATGGCTGCCTACCTTACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATGAGTGTATTTTTCCATCTCAATGGCTGCCTACCTTACATAT  450

seq1  AGTTCCTTTGTTGGAATAAAAATCTTGGTAAAGTACACACCAGTCACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTTGTTGGAATAAAAATCTTGGTAAAGTACACACCAGTCACTAT  500

seq1  AAATAGCACTGTGCTTGGGCATTCAGGAGAGTCTCCAGAGAGTATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCACTGTGCTTGGGCATTCAGGAGAGTCTCCAGAGAGTATATTTT  550

seq1  AAACCCACATTGTTTAGAATAGGAAATTTTCCTGGTGTTCATATTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACATTGTTTAGAATAGGAAATTTTCCTGGTGTTCATATTTTCCA  600

seq1  TTGTGGTGACATGGATTGTCCCCTGTCACACATCTTCTCTGGCTCCCGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGACATGGATTGTCCCCTGTCACACATCTTCTCTGGCTCCCGTC  650

seq1  TTCCTGTGCCACTTAGGAATCAAACTAGTAGATTCCAGAAGAGTATTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGCCACTTAGGAATCAAACTAGTAGATTCCAGAAGAGTATTCAA  700

seq1  TATGTGCTTCCA-TTTTTTTTCTATGGATACCCTGGGAATTCTGCATACA  749
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTCCATTTTTTTTTCTATGGATACCCTGGGAATTCTGCATACA  750

seq1  TCTTGGGGCTCTCCAAATGAAGCCTCAGAGAACTCACAGAGCCAGCATCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGCTCTCCAAATGAAGCCTCAGAGAACTCACAGAGCCAGCATCC  800

seq1  GCAACTAGGCAACAAAAGAGGGCTTTCTTTCTGGAGATGGATGCTCTGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAGGCAACAAAAGAGGGCTTTCTTTCTGGAGATGGATGCTCTGGT  850

seq1  GCGCCTGCTTAGAGGAACAGTGTCAATTCCACTTTTGATTCCCACAGAAA  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCGCCTGCTTAGAGGAACAGTGTCAATTCCACTTTTGA-TCCCACAGAAA  899

seq1  CCTTATGCTGTTGGTGGGATTTTTTAGGGGGAACTCAAGAGGCGAATATG  949
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CCTTATGCTGTTGGTGGGA-TTTTTAGGGGGTACTCAAGAGGCGAATATG  948

seq1  GAAAATAACTGAGCAGGAAGTGAGTGAGCACACAGGCAGCA-TGAAATGA  998
      ||||   |||||||||||||||||||||||||||||||||| ||||||||
seq2  GAAA--TACTGAGCAGGAAGTGAGTGAGCACACAGGCAGCATTGAAATGA  996

seq1  TGGGTTACCATGCTGGTTCCAAGAGCAAGGGCATCATCAGG-TCTAGTTA  1047
      |||||||||||||||| ||||||||| |||||||||||||| ||||| ||
seq2  TGGGTTACCATGCTGGGTCCAAGAGC-AGGGCATCATCAGGTTCTAG-TA  1044

seq1  CACGGCACC-TTTCCCAAGACA-CTGTTGGCAGCTCCAGTATATGGGAAG  1095
      ||||||||| |||||||||||| |||||| |||||||||||||| || ||
seq2  CACGGCACCTTTTCCCAAGACACCTGTTGCCAGCTCCAGTATATTGGTAG  1094

seq1  CTCT-GCCCACTCCTTCCTCAAACAGTTTCTCTGTTTC  1132
      |||| ||||||||| |||||  || | |||||||||||
seq2  CTCTGGCCCACTCC-TCCTC--ACCGGTTCTCTGTTTC  1129

seq1: chr6_34801009_34802039
seq2: B6Ng01-224H17.g_68_1100 (reverse)

seq1  CTACAGATCAGGCTAGGGGCGTAGCTCAGCTGT--GAGCACGAGGGACCT  48
      |||||||||||||||||||||||||||||||||   |||||||| |  ||
seq2  CTACAGATCAGGCTAGGGGCGTAGCTCAGCTGTTGAAGCACGAGAGGACT  50

seq1  GCACTTCATTCCC--AAACCCATGTTTTTAAAAGGGGGAAGGGGTCCATG  96
      |||||||||||||  || ||||||||||   || ||||||||||||||||
seq2  GCACTTCATTCCCCAAACCCCATGTTTT---AAAGGGGAAGGGGTCCATG  97

seq1  -TAATCCCAGCACCCAGGAGGCAGAGACA-GGTAGATCACCTAGGGCTCA  144
       |||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  TTAATCCCAGCACCCAGGAGGCAGAGACAGGGTAGATCA-CTAGGGCTCA  146

seq1  TTGACCAAGCCAATTTACTGACCATGGCAAGCTCCAGGTCAGACAGCCTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAAGCCAATTTACTGACCATGGCAAGCTCCAGGTCAGACAGCCTG  196

seq1  TTGAAAGTGAGTGGGAGATGGGGAGATAGAATATGAGGCATGACACTTGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTGAGTGGGAGATGGGGAGATAGAATATGAGGCATGACACTTGA  246

seq1  AGTTGCCCTGTGGTGTAGATATGCATGTGCACCCACATACACACACATGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCCCTGTGGTGTAGATATGCATGTGCACCCACATACACACACATGC  296

seq1  CATACACACACATGCTGAAGAACACACAGAGAAAATCACAAAAAGTGCAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACACATGCTGAAGAACACACAGAGAAAATCACAAAAAGTGCAA  346

seq1  ATAGGATGTTACAGAAGAATATTTCCTCAGAGTGTGCATATACACACACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGTTACAGAAGAATATTTCCTCAGAGTGTGCATATACACACACA  396

seq1  ATTACACTCTGTGGAATAGAATGTTTTCATGCCCCTGTAGCTTGGCTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTCTGTGGAATAGAATGTTTTCATGCCCCTGTAGCTTGGCTTTT  446

seq1  ATTTCAGAGGGTTTTTTTTCTCATGAGTCCTGCATGTACATCCTTCCCAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAGGGTTTTTTTTCTCATGAGTCCTGCATGTACATCCTTCCCAC  496

seq1  CCTTCCCTTGTCCAACTCCTCTCGTGTCCCACCCACGTCCCTCTGAAATT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCTTGTCCAACTCCTCTCGTGTCCCACCCACGTCCCTCTGAAATT  546

seq1  CATGACCTCCTTTCCTTACTGTTACATGTTTGTGTTTATGTACATAAAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTCCTTTCCTTACTGTTACATGTTTGTGTTTATGTACATAAAAT  596

seq1  CTGAATTCATAATTTTAGTCAGCCCCAAAGGAATCTCATTGGCCATATGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCATAATTTTAGTCAGCCCCAAAGGAATCTCATTGGCCATATGG  646

seq1  TTTAACAGCACAATTTCATCAAGCATTTAAAGAAGTGGTTTTCACTCTAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGCACAATTTCATCAAGCATTTAAAGAAGTGGTTTTCACTCTAT  696

seq1  GCTGTAACCCTTTAACACAGTTCTTCATGTTGTGGTGGCCCCCAGCCATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAACCCTTTAACACAGTTCTTCATGTTGTGGTGGCCCCCAGCCATA  746

seq1  AAATTATTTCACTGCTACTTCATAACAGTAATTTTGCTACTGTTATAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTCACTGCTACTTCATAACAGTAATTTTGCTACTGTTATAAAT  796

seq1  TGTAAATATATAATATGCAGGATATCTGATATATGACACCAAAGAGTTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATATAATATGCAGGATATCTGATATATGACACCAAAGAGTTGC  846

seq1  AACCCACAGGTTAAAAACCAAAGATTTAAGAATAATTAATACCAGTTCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACAGGTTAAAAACCAAAGATTTAAGAATAATTAATACCAGTTCTG  896

seq1  CAGTGACTTATAGAAAATGAGAAAATAATTCATAGTTCACTTTATGAAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTTATAGAAAATGAGAAAATAATTCATAGTTCACTTTATGAAGC  946

seq1  TACTATTGGCATGATACCAAAATCAGTCAAAGAGAGAATCAAAATTTTAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGGCATGATACCAAAATCAGTCAAAGAGAGAATCAAAATTTTAA  996

seq1  AAATCAAGAAATTTAATCATATTAGCAAATAGAATTC  1031
      |||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAAATTTAATCATATTAGCAAATAGAATTC  1033