BAC Information

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BAC

Clone NameB6Ng01-224I01
Chromosome6 (Build37)
Map Location 98,049,981 - 98,161,682
singlet/doubletdoublet
Overlap genenone
Upstream geneA130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b, LOC641241, LOC100043692, Mitf
Downstream geneGm765, LOC666019, LOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224I01.bB6Ng01-224I01.g
ACCGA038944GA038945
length1,072302
definitionB6Ng01-224I01.b B6Ng01-224I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,049,981 - 98,051,053)(98,161,381 - 98,161,682)
sequence
gaattctttagtgaatatgagaaagtcaagggatgggtgaatcatgattt
tcagccccttaacttagatacacactaactaattaataatcataacaact
ttaatttatttgcatgtgtgcatacctatgtgtgtttgggtgtatgtgtg
tgtccgtgcacatatgcatatacatgtgtgtacaatgtgttttttaggaa
aggagtaaacctaaggtattgtttctctgaagccggctactgtgccttct
ttgatcttctgttattggtctagcacttacccatcaggctatagtggttg
gctacccaaccctcagggtctacttgtctccatctctacatcactgggat
tcaggtatgaccaccatgcctaacttttcaatgcaggtcctgaatactga
gtgtagaatctcatatctgcaagcactttgcaagctgagttctctctcta
gccccataaataattttcctctgtctccccacctattttcttgacattcc
tttactaccatttatgaacaaatagagttggagttaatggaaggtgattc
tggggaaaatactatgaagaatcagctgtttcccttacatcctgttttgt
gatacaacagagaggaagacgctgagggccgtagcaggcagagttcagga
atactgctagccattcacctgtgcagaggacagactacaagcagagttag
ctgccccagaggtccttggggggaggggctaaggaagtgtgagctatatg
agaaaaggcatgagttatatacatggagtattccatacccacagattgtc
aggcatctataatttgtccaccgagaaaagatgtccttgggtgagcatat
ctgggaagcttatgaattcaggtcagatgaagtttttggacttcacagcc
agtgagaaagccattcaatatttctgtccagagactgaggtaaatggaaa
gaaatgcaccataggagtgtccagaagcctgcgcgagagagcattagagg
gggtcgttacactatggaagaggtgaggaactggagtacagcccccagca
ctcaggaacgcaggccatggta

ttaatttttgagagagtacagaaaaaaataacgtgaaaaaatgatttttt
ttaaaaaaagtatgttttctggacagcaggaaagcagtcagttatttctg
gagtttgcattgcatataaatatcacagagccaaatcttgccctccaatg
gtttttcttctggttgcctgagtccatatgtttctagaagttcaatttgt
ttccttgtatttcaaggtataatcatttaactactatttcataggcagaa
tctccatgaaattaaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_98049981_98051053
seq2: B6Ng01-224I01.b_48_1119

seq1  GAATTCTTTAGTGAATATGAGAAAGTCAAGGGATGGGTGAATCATGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGTGAATATGAGAAAGTCAAGGGATGGGTGAATCATGATTT  50

seq1  TCAGCCCCTTAACTTAGATACACACTAACTAATTAATAATCATAACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCTTAACTTAGATACACACTAACTAATTAATAATCATAACAACT  100

seq1  TTAATTTATTTGCATGTGTGCATACCTATGTGTGTTTGGGTGTATGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTTGCATGTGTGCATACCTATGTGTGTTTGGGTGTATGTGTG  150

seq1  TGTCCGTGCACATATGCATATACATGTGTGTACAATGTGTTTTTTAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTGCACATATGCATATACATGTGTGTACAATGTGTTTTTTAGGAA  200

seq1  AGGAGTAAACCTAAGGTATTGTTTCTCTGAAGCCGGCTACTGTGCCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAAACCTAAGGTATTGTTTCTCTGAAGCCGGCTACTGTGCCTTCT  250

seq1  TTGATCTTCTGTTATTGGTCTAGCACTTACCCATCAGGCTATAGTGGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTTCTGTTATTGGTCTAGCACTTACCCATCAGGCTATAGTGGTTG  300

seq1  GCTACCCAACCCTCAGGGTCTACTTGTCTCCATCTCTACATCACTGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCAACCCTCAGGGTCTACTTGTCTCCATCTCTACATCACTGGGAT  350

seq1  TCAGGTATGACCACCATGCCTAACTTTTCAATGCAGGTCCTGAATACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATGACCACCATGCCTAACTTTTCAATGCAGGTCCTGAATACTGA  400

seq1  GTGTAGAATCTCATATCTGCAAGCACTTTGCAAGCTGAGTTCTCTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGAATCTCATATCTGCAAGCACTTTGCAAGCTGAGTTCTCTCTCTA  450

seq1  GCCCCATAAATAATTTTCCTCTGTCTCCCCACCTATTTTCTTGACATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATAAATAATTTTCCTCTGTCTCCCCACCTATTTTCTTGACATTCC  500

seq1  TTTACTACCATTTATGAACAAATAGAGTTGGAGTTAATGGAAGGTGATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTACCATTTATGAACAAATAGAGTTGGAGTTAATGGAAGGTGATTC  550

seq1  TGGGGAAAATACTATGAAGAATCAGCTGTTTCCCTTACATCCTGTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAATACTATGAAGAATCAGCTGTTTCCCTTACATCCTGTTTTGT  600

seq1  GATACAACAGAGAGGAAGACGCTGAGGGCCGTAGCAGGCAGAGTTCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAACAGAGAGGAAGACGCTGAGGGCCGTAGCAGGCAGAGTTCAGGA  650

seq1  ATACTGCTAGCCATTCACCTGTGCAGAGGACAGACTACAAGCAGAGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGCTAGCCATTCACCTGTGCAGAGGACAGACTACAAGCAGAGTTAG  700

seq1  CTGCCCCAGAGGTCCTTGGGGGGAGGGGCTAAGGAAGTGTGAGCTATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCAGAGGTCCTTGGGGGGAGGGGCTAAGGAAGTGTGAGCTATATG  750

seq1  AGAAAAGGCATGAGTTATATACATGGAGTATTCCATACCCACAGATTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCATGAGTTATATACATGGAGTATTCCATACCCACAGATTGTC  800

seq1  AGGCATCTATAATTTGTCCACCGAGAAAAGATGTCCTTGGGTGAGCATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTATAATTTGTCCACCGAGAAAAGATGTCCTTGGGTGAGCATAT  850

seq1  CTGGGAAGCTTATGAATTCAGGTCAGATGAAGTTTTTGGACTTCACAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGCTTATGAATTCAGGTCAGATGAAGTTTTTGGACTTCACAGCC  900

seq1  AGTGAGAAAGCCATTCAAATATTTCTGTCCAGAGACTGAGGTAAATGGAA  950
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTGAGAAAGCCATTC-AATATTTCTGTCCAGAGACTGAGGTAAATGGAA  949

seq1  AGAAATGCACCATAGGAAGTGTCCAGAAGCCTGCGCGAGAGAGCATTAGA  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAAATGCACCATAGG-AGTGTCCAGAAGCCTGCGCGAGAGAGCATTAGA  998

seq1  GGGGGTCGTTACACTAT-GAAGAGGTGA-GAACTTGAGTTACAGCCCCCA  1048
      ||||||||||||||||| |||||||||| ||||| ||| |||||||||||
seq2  GGGGGTCGTTACACTATGGAAGAGGTGAGGAACTGGAG-TACAGCCCCCA  1047

seq1  GCACTCAGGAAGGCAAGGCATGGTA  1073
      ||||||||||| ||| | |||||||
seq2  GCACTCAGGAACGCAGGCCATGGTA  1072


seq1: chr6_98161381_98161682
seq2: B6Ng01-224I01.g_71_372 (reverse)

seq1  CACACACACACACACACACACACACACACACACAAATTTAATTTCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACAAATTTAATTTCATGGA  50

seq1  GATTCTGCCTATGAAATAGTAGTTAAATGATTATACCTTGAAATACAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGCCTATGAAATAGTAGTTAAATGATTATACCTTGAAATACAAGG  100

seq1  AAACAAATTGAACTTCTAGAAACATATGGACTCAGGCAACCAGAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTGAACTTCTAGAAACATATGGACTCAGGCAACCAGAAGAAAA  150

seq1  ACCATTGGAGGGCAAGATTTGGCTCTGTGATATTTATATGCAATGCAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGGAGGGCAAGATTTGGCTCTGTGATATTTATATGCAATGCAAAC  200

seq1  TCCAGAAATAACTGACTGCTTTCCTGCTGTCCAGAAAACATACTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAATAACTGACTGCTTTCCTGCTGTCCAGAAAACATACTTTTTTT  250

seq1  AAAAAAAATCATTTTTTCACGTTATTTTTTTCTGTACTCTCTCAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATCATTTTTTCACGTTATTTTTTTCTGTACTCTCTCAAAAATT  300

seq1  AA  302
      ||
seq2  AA  302


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