BAC Information

Click to search

BAC

Clone NameB6Ng01-224I10
Chromosome6 (Build37)
Map Location 79,305,893 - 79,439,890
singlet/doubletdoublet
Overlap genenone
Upstream genePap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224I10.bB6Ng01-224I10.g
ACCGA038961GA038962
length1,1261,018
definitionB6Ng01-224I10.b B6Ng01-224I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,305,893 - 79,307,026)(79,438,880 - 79,439,890)
sequence
gaattctgagctagaagtctgtagaaaaagaagcaaatgtgaatgagtga
tttaatgctcttcttagagcatatgtcttcattactatccaaatactatg
ttctgttgatgagatgttcagaatactggataatatgaaataatagacaa
accttctagttatagttttccattaaacatttctttgtctggggtaatac
acagtacagcttacacctttttaacatataactaaactattttgtgtcaa
taatactacaaagctcaccataataagaatgtacattcaacacaggtgaa
aattataaccaactcaagaataagtcgcatatattataatcctaaatgtt
caacaaggctggtaatgtcacttgcatgattaattatatacttaaattta
acaatgagaactattcatttaacacctactctagatatgtgcagaataag
tgataaaaataaagtataggcataagacttactaaataactagtagttga
aaatacttttaagcagacaataacttctctccagaaaacaataggtgaaa
attacaatatgtgttatagtgtagagaataaatagtatttctgaagagta
ttattttaatgctgtgttcagataaatgtttttgaacaaaatgttcattg
tttcacatttatttttgggttacaatatatttaagatacattgaaatcag
gtcgtgtattttctctacatgtgaatggttccaactactaattgcctttc
tttctgtcttgcttttgttcctttctccctccattccgcttcctttctgc
ctgccttccttcttgctttatttctgtcatacatacactaaatatttaca
aatttaaatacttgaaaaatgtcctggaaatatgaaaaaagaaagaacat
tcaacattaaatttctcataattgtgtggcaattagtgagaacacttaaa
acacaaaggttctaataatcacgtttaaaaggatattactactagaattg
cagcaaaagtctaggaattatcaaaataaatttgcaaatatgatggacag
tagctcacgcagcatatgctttcttctttccttctcccagtactttgctt
gattaaacccatggagattattcttc

gaattctcacccgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctcataccagtcagaatggctaagatcaaagactcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactgctccattgttggtg
ggattgcaaggatgttttctttatttttaaacagtgactgtctgggcctg
gaaagatgggtcagtggttaaggcacaggctttcttccagagcactcagg
tttatttcctacacccatatggggcccacatatgtgtctcattttatgga
atctgatgccatcttattgcctttgaggggatgaggcacacacatcatac
acagataaaacacccaaacacataaaaatacacaatcaattaataataaa
aatgtatttttaaaaagccgagtctcttttttttttttttgcaagaataa
gccttctagtattggatgcaacaggaaaaggacctcaaggttaaaactgc
tgttttaacacaagacaaaaagcaatatagaaatcactgacttttctgga
ggtcctcagacaactgaggtaccaagaaaaccctgaaacttaaattatca
gacactggaaaatgcagagaataatagatgaaatcagtttatctgaaacc
aatgcacccttacttaacactttgggcaatgtcatgaggctgtgtttggc
atagttgaaagggcaaaatctgtggtagctacacagagtgtgcaatagtt
ttatggctgttcctccagaatcagattaggttttcataagcagaatccgt
gtgtgggtatgtttgtctgtgtgtatgtgtttgtgcatgtgtgtgcatgt
atgtatgcatatgttttgtgtaagtgtgcaacattgtatattgttagtgt
atttgtgtgtgccatgccatgttgtacattgtacattggcctccacgttg
catttgctcataccgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79305893_79307026
seq2: B6Ng01-224I10.b_46_1171

seq1  GAATTCTGAGCTAGAAGTCTGTAGAAAAAGAAGCAAATGTGAATGAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCTAGAAGTCTGTAGAAAAAGAAGCAAATGTGAATGAGTGA  50

seq1  TTTAATGCTCTTCTTAGAGCATATGTCTTCATTACTATCCAAATACTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTCTTCTTAGAGCATATGTCTTCATTACTATCCAAATACTATG  100

seq1  TTCTGTTGATGAGATGTTCAGAATACTGGATAATATGAAATAATAGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGATGAGATGTTCAGAATACTGGATAATATGAAATAATAGACAA  150

seq1  ACCTTCTAGTTATAGTTTTCCATTAAACATTTCTTTGTCTGGGGTAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTAGTTATAGTTTTCCATTAAACATTTCTTTGTCTGGGGTAATAC  200

seq1  ACAGTACAGCTTACACCTTTTTAACATATAACTAAACTATTTTGTGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAGCTTACACCTTTTTAACATATAACTAAACTATTTTGTGTCAA  250

seq1  TAATACTACAAAGCTCACCATAATAAGAATGTACATTCAACACAGGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTACAAAGCTCACCATAATAAGAATGTACATTCAACACAGGTGAA  300

seq1  AATTATAACCAACTCAAGAATAAGTCGCATATATTATAATCCTAAATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAACCAACTCAAGAATAAGTCGCATATATTATAATCCTAAATGTT  350

seq1  CAACAAGGCTGGTAATGTCACTTGCATGATTAATTATATACTTAAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCTGGTAATGTCACTTGCATGATTAATTATATACTTAAATTTA  400

seq1  ACAATGAGAACTATTCATTTAACACCTACTCTAGATATGTGCAGAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGAACTATTCATTTAACACCTACTCTAGATATGTGCAGAATAAG  450

seq1  TGATAAAAATAAAGTATAGGCATAAGACTTACTAAATAACTAGTAGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAATAAAGTATAGGCATAAGACTTACTAAATAACTAGTAGTTGA  500

seq1  AAATACTTTTAAGCAGACAATAACTTCTCTCCAGAAAACAATAGGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTTTAAGCAGACAATAACTTCTCTCCAGAAAACAATAGGTGAAA  550

seq1  ATTACAATATGTGTTATAGTGTAGAGAATAAATAGTATTTCTGAAGAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATATGTGTTATAGTGTAGAGAATAAATAGTATTTCTGAAGAGTA  600

seq1  TTATTTTAATGCTGTGTTCAGATAAATGTTTTTGAACAAAATGTTCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAATGCTGTGTTCAGATAAATGTTTTTGAACAAAATGTTCATTG  650

seq1  TTTCACATTTATTTTTGGGTTACAATATATTTAAGATACATTGAAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATTTATTTTTGGGTTACAATATATTTAAGATACATTGAAATCAG  700

seq1  GTCGTGTATTTTCTCTACATGTGAATGGTTCCAACTACTAATTGCCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGTATTTTCTCTACATGTGAATGGTTCCAACTACTAATTGCCTTTC  750

seq1  TTTCTGTCTTGCTTTTGTTCCTTTCTCCCTCCATTCCGCTTCCTTTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTGCTTTTGTTCCTTTCTCCCTCCATTCCGCTTCCTTTCTGC  800

seq1  CTGCCTTCCTTCTTGCTTTATTTCTGTCATACATACACTAAATATTTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCCTTCTTGCTTTATTTCTGTCATACATACACTAAATATTTACA  850

seq1  AA-TTAAATACTTGAAAAATGTCCTGGAAATATGAAAAAAAGAAAGAACA  899
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATTTAAATACTTGAAAAATGTCCTGGAAATATG-AAAAAAGAAAGAACA  899

seq1  TTCAACATTAAATTTCTCATAATTGTGTGGCAATTAGTGAGAACACTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATTAAATTTCTCATAATTGTGTGGCAATTAGTGAGAACACTTAA  949

seq1  AACACAAAGGTTCTAATAATCACGTTTAAAAGGATATTACTACTTAGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACACAAAGGTTCTAATAATCACGTTTAAAAGGATATTACTAC-TAGAAT  998

seq1  TGCAGGCAAAAGTCTAGGAATTATCAAAATAAATTGCAAAATATGATGGG  1049
      |||| ||||||||||||||||||||||||||||||   ||||||||| ||
seq2  TGCA-GCAAAAGTCTAGGAATTATCAAAATAAATTTGCAAATATGAT-GG  1046

seq1  ACAGTAGCTCACGCAAGCATATGCCTTTCTTCCTTTTCCTTCTTCCCAAT  1099
      |||||||||||||| |||||||| ||||||||  |||||||||  || | 
seq2  ACAGTAGCTCACGC-AGCATATG-CTTTCTTC--TTTCCTTCT--CCCAG  1090

seq1  TACCTTGCCTTGATTAAAACCAT-GAGATTA-TCTTC  1134
      ||| ||| |||||||||| |||| ||||||| |||||
seq2  TACTTTG-CTTGATTAAACCCATGGAGATTATTCTTC  1126


seq1: chr6_79438880_79439890
seq2: B6Ng01-224I10.g_67_1084 (reverse)

seq1  ACAC-GTATGAGCAAATGC-ACGTGGAGG-CAATGTAC-ATGTAC-ACAT  45
      |||| |||||||||||||| ||||||||| |||||||| |||||| ||||
seq2  ACACGGTATGAGCAAATGCAACGTGGAGGCCAATGTACAATGTACAACAT  50

seq1  -GCAT-GCACACAC-AATACACTAAC-ATATACAATG-TGCACACTTACA  90
       |||| |||||||| ||||||||||| |||||||||| ||||||||||||
seq2  GGCATGGCACACACAAATACACTAACAATATACAATGTTGCACACTTACA  100

seq1  CAAAACATATGCATACATACATGCACACACATGCACAAACACATACACAC  140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACATATGCATACATACATGCACACACATGCACAAACACATACACAC  150

seq1  AGACAAACATACCCACACACGGATTCTTGCTTATGAAAACCTAATCTGAT  190
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGACAAACATACCCACACACGGATTC-TGCTTATGAAAACCTAATCTGAT  199

seq1  TCCTGGAGGAACAGCCATAAAACTATTGCACACTCTGTGTAGCTACCACA  240
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-CTGGAGGAACAGCCATAAAACTATTGCACACTCTGTGTAGCTACCACA  248

seq1  GATTTTGCCCTTTCAACCTATGCCAAACACAGCCTCATGACATTGCCCAA  290
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATTTTGCCCTTTCAA-CTATGCCAAACACAGCCTCATGACATTGCCCAA  297

seq1  AGTGTTAAGTAAGGGTGCATTGGTTTCAGATAAACTGATTTCATCTATTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAAGTAAGGGTGCATTGGTTTCAGATAAACTGATTTCATCTATTA  347

seq1  TTCTCTGCATTTTCCAGTGTCTGATAATTTAAGTTTCAGGGTTTTCTTGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGCATTTTCCAGTGTCTGATAATTTAAGTTTCAGGGTTTTCTTGG  397

seq1  TACCTCAGTTGTCTGAGGACCTCCAGAAAAGTCAGTGATTTCTATATTGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGTTGTCTGAGGACCTCCAGAAAAGTCAGTGATTTCTATATTGC  447

seq1  TTTTTGTCTTGTGTTAAAACAGCAGTTTTAACCTTGAGGTCCTTTTCCTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTTGTGTTAAAACAGCAGTTTTAACCTTGAGGTCCTTTTCCTG  497

seq1  TTGCATCCAATACTAGAAGGCTTATTCTTGCAAAAAAAAAAAAAAGAGAC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCCAATACTAGAAGGCTTATTCTTGCAAAAAAAAAAAAAAGAGAC  547

seq1  TCGGCTTTTTAAAAATACATTTTTATTATTAATTGATTGTGTATTTTTAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTTTTTAAAAATACATTTTTATTATTAATTGATTGTGTATTTTTAT  597

seq1  GTGTTTGGGTGTTTTATCTGTGTATGATGTGTGTGCCTCATCCCCTCAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGGTGTTTTATCTGTGTATGATGTGTGTGCCTCATCCCCTCAAA  647

seq1  GGCAATAAGATGGCATCAGATTCCATAAAATGAGACACATATGTGGGCCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAAGATGGCATCAGATTCCATAAAATGAGACACATATGTGGGCCC  697

seq1  CATATGGGTGTAGGAAATAAACCTGAGTGCTCTGGAAGAAAGCCTGTGCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGGTGTAGGAAATAAACCTGAGTGCTCTGGAAGAAAGCCTGTGCC  747

seq1  TTAACCACTGACCCATCTTTCCAGGCCCAGACAGTCACTGTTTAAAAATA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACTGACCCATCTTTCCAGGCCCAGACAGTCACTGTTTAAAAATA  797

seq1  AAGAAAACATCCTTGCAATCCCACCAACAATGGAGCAGTGTTCCTCTTTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACATCCTTGCAATCCCACCAACAATGGAGCAGTGTTCCTCTTTC  847

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTCTTTGATCTTAGCCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAGTCTTTGATCTTAGCCA  897

seq1  TTCTGACTGGTATGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTATGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCT  947

seq1  CTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTCG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGCTGAACATTTTTTCAGGTGCTTCTCAGCCATTCG  997

seq1  GTATTCCTCGGGTGAGAATTC  1011
      |||||||||||||||||||||
seq2  GTATTCCTCGGGTGAGAATTC  1018


| Home | SequenceCutter | Blast | Download |