BAC Information

Click to search

BAC

Clone NameB6Ng01-224P07
Chromosome6 (Build37)
Map Location 141,174,233 - 141,345,097
singlet/doubletdoublet
Overlap genePde3a
Upstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875
Downstream geneSlco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224P07.bB6Ng01-224P07.g
ACCGA039273GA039274
length8471,134
definitionB6Ng01-224P07.b B6Ng01-224P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,174,233 - 141,174,821)(141,344,011 - 141,345,097)
sequence
gaattctcccttttcaggaatgcctaaaaacagatagacagactttatgg
atgtgttttgcatgtgaaattatcattgatacttaaaaaatattttagaa
ggggcaaagtgtccacacttcagtcttcgttcttcttgagtttcatgtgt
tttgcaaattgtatcttatatcttgggtaccctaagtttctgggctaata
tctacttatcagtgagaacatatcatttgagttcttttgtgattgggtta
cctcactcaggatgatgccctccaggtccacccatttgcctaggaatttc
ataaattcattctttttaatagctgagtagtactccattgtgtagatgta
ccacattttttgtatccattcctctgttgaggggcatctgggttctttcc
agcttctggctattataaataaggctgctatgaacatagtggagcatgtg
tctttcttaccagttggaacatcttctggatatatgcccaggagaggtga
ctccattgcatacactagcaagattttgctgaaaggaccctgttatagct
gtctcttgtgagactatgtcgaggcttagcaaacacagaagtggatgctc
atagtcagctatttggatggatcacagggcccccaatgaaggagctagag
aaagtacccaaggagctaaagggatctgcaaccctataggtggaacaaca
atatgaactaaaccagtaccccggagctcttgactctagctgcatatgta
tcaaaagatggcctagttggccatcactggaaagagaggcccattggtca
tgcaaaccttatatgcccagtacaggggaatgccctggggccaaaaa

gaattccacctaccctctgctcctgactgaaagggttacaaccaggcagt
cagtaggaagtctaggatactggggtgaggagaggttgcagaaagcaaga
ggcttagatttgcttgagtttaactcttgagtccactcaacagctagttc
tccttctctgctaagtgtaaggaggttcccacagctggccttagactatt
ttcataactctcctttgcctcctccctcacaatgacaaccaattcactaa
cccctcaggctgctaaatcttataaatattagtgaagtgacatttggatt
atgcataacatttatattatgtgtacatcgatacatctcgatgaagtagg
caactattactgattcattaccatatccaacacaagagttcttccctgtt
acatagcttagctaggaaaacttggcagcaaaatgaaataagctcatggt
tctgcataaggaaattccagcggtgatatttcaatgaacactggatatta
aagactgggggagtcttcaaggaagcagggttaaagattccacagaactt
ctctttccacttaaagaaagattaacaatgtttgaagacatagatttttc
aacaatctgttttgtgggtttctaaatacttttcttatgatttattttct
ttcattatttaagaaaaatgttacgtggccctgctttatgaatatagaaa
tggattgaaagaggcaggatggaagcaattacatagtaactgaaaaggga
ttgaaatgtaggtcagctacatgtgtatcacatgtttccttttcctactg
gccaggttttagcaggattaatcacagaagtcctgctaaaatctcttggg
tcttgtgatgctggaacattctttggcgaggaagaaaggaaaaagggtac
ccagggcttccacatgccctttcaactgttcaactcacttgggatgtatt
tcctccttcgtgtttcttcggtctttcttaagaactgtggggaacctgaa
gaaaattaataaactttttctaacactcctataaaactatcaaatacctt
caaatggatagcttgtaccaatcattctctaagagtaaagtataattggt
tcgctgtgcttaaaataccaacttgttccacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141174233_141174821
seq2: B6Ng01-224P07.b_47_635

seq1  GAATTCTCCCTTTTCAGGAATGCCTAAAAACAGATAGACAGACTTTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTTTCAGGAATGCCTAAAAACAGATAGACAGACTTTATGG  50

seq1  ATGTGTTTTGCATGTGAAATTATCATTGATACTTAAAAAATATTTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTTGCATGTGAAATTATCATTGATACTTAAAAAATATTTTAGAA  100

seq1  GGGGCAAAGTGTCCACACTTCAGTCTTCGTTCTTCTTGAGTTTCATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAAGTGTCCACACTTCAGTCTTCGTTCTTCTTGAGTTTCATGTGT  150

seq1  TTTGCAAATTGTATCTTATATCTTGGGTACCCTAAGTTTCTGGGCTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATTGTATCTTATATCTTGGGTACCCTAAGTTTCTGGGCTAATA  200

seq1  TCTACTTATCAGTGAGAACATATCATTTGAGTTCTTTTGTGATTGGGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTATCAGTGAGAACATATCATTTGAGTTCTTTTGTGATTGGGTTA  250

seq1  CCTCACTCAGGATGATGCCCTCCAGGTCCACCCATTTGCCTAGGAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCAGGATGATGCCCTCCAGGTCCACCCATTTGCCTAGGAATTTC  300

seq1  ATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTA  350

seq1  CCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTTTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCC  400

seq1  AGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTG  450

seq1  TCTTTCTTACCAGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTACCAGTTGGAACATCTTCTGGATATATGCCCAGGAGAGGTGA  500

seq1  CTCCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGTTATAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGTTATAGCT  550

seq1  GTCTCTTGTGAGACTATGTCGAGGCTTAGCAAACACAGA  589
      |||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGTGAGACTATGTCGAGGCTTAGCAAACACAGA  589


seq1: chr6_141344011_141345097
seq2: B6Ng01-224P07.g_67_1200 (reverse)

seq1  CAAGT-GAAC-AGTTGGTA-TTTAAG--CAGCCAAC---ATATACTTTAC  42
      ||||| |||| |||||||| ||||||  |||| |||    ||||||||||
seq2  CAAGTGGAACAAGTTGGTATTTTAAGCACAGCGAACCAATTATACTTTAC  50

seq1  TCTTAGAG-ATGATTTGTAC-AGCTATCATTTTGAAG---TATGATAG-T  86
      |||||||| |||||| |||| |||||||  |||||||   | |||||| |
seq2  TCTTAGAGAATGATTGGTACAAGCTATCCATTTGAAGGTATTTGATAGTT  100

seq1  TTATA-GAGTGT---AGAAAGTT--ATAATTTTCTT-ACGTT--CCACAG  127
      ||||| ||||||   | ||||||   |||||||||| | |||  ||||||
seq2  TTATAGGAGTGTTAGAAAAAGTTTATTAATTTTCTTCAGGTTCCCCACAG  150

seq1  -TCTTAAGAAAGACGGA--GAACACG-AGGA-GAAATACATCC--AGTGA  170
       ||||||||||||| ||   |||||| |||| |||||||||||  |||||
seq2  TTCTTAAGAAAGACCGAAGAAACACGAAGGAGGAAATACATCCCAAGTGA  200

seq1  GTTG-ACAG-TGAA--GGCATGT-GAAGCC--TGGTACC--TTTTCCTT-  210
      |||| |||| ||||  ||||||| ||||||   ||||||  |||||||| 
seq2  GTTGAACAGTTGAAAGGGCATGTGGAAGCCCTGGGTACCCTTTTTCCTTT  250

seq1  -CTCCTCGCCAA--GATGTTCCAGCATCAC-AGACC--AGAGA-TTTAGC  253
        ||||||||||   ||||||||||||||| |||||  ||||| ||||||
seq2  CTTCCTCGCCAAAGAATGTTCCAGCATCACAAGACCCAAGAGATTTTAGC  300

seq1  AGGGACTCTGTGATTATTCCTGCTAAAAGCTGGCCAGTAGGAAAAGGAAA  303
      |||   |||||||||| ||||||||||| |||||||||||||||||||||
seq2  AGGACTTCTGTGATTAATCCTGCTAAAACCTGGCCAGTAGGAAAAGGAAA  350

seq1  CATGTGATACACATGTAGCTGACCTACATTTCAATCCCTTTTCAGTTACT  353
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGATACACATGTAGCTGACCTACATTTCAATCCCTTTTCAGTTACT  400

seq1  ATGTAATTGCTTCCATCCTGCCTCTTTCAATCCATTTCTATATTCATAAA  403
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTGCTTCCATCCTGCCTCTTTCAATCCATTTCTATATTCATAAA  450

seq1  GCAGGGCCACGTAACATTTTTCTTAAATAATGAAAGAAAATAAATCATAA  453
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCACGTAACATTTTTCTTAAATAATGAAAGAAAATAAATCATAA  500

seq1  GAAAAGTATTTAGAAACCCACAAAACAGATTGTTGAAAAATCTATGTCTT  503
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTATTTAGAAACCCACAAAACAGATTGTTGAAAAATCTATGTCTT  550

seq1  CAAACATTGTTAATCTTTCTTTAAGTGGAAAGAGAAGTTCTGTGGAATCT  553
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTGTTAATCTTTCTTTAAGTGGAAAGAGAAGTTCTGTGGAATCT  600

seq1  TTAACCCTGCTTCCTTGAAGACTCCCCCAGTCTTTAATATCCAGTGTTCA  603
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCTGCTTCCTTGAAGACTCCCCCAGTCTTTAATATCCAGTGTTCA  650

seq1  TTGAAATATCACCGCTGGAATTTCCTTATGCAGAACCATGAGCTTATTTC  653
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATCACCGCTGGAATTTCCTTATGCAGAACCATGAGCTTATTTC  700

seq1  ATTTTGCTGCCAAGTTTTCCTAGCTAAGCTATGTAACAGGGAAGAACTCT  703
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCTGCCAAGTTTTCCTAGCTAAGCTATGTAACAGGGAAGAACTCT  750

seq1  TGTGTTGGATATGGTAATGAATCAGTAATAGTTGCCTACTTCATCGAGAT  753
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGATATGGTAATGAATCAGTAATAGTTGCCTACTTCATCGAGAT  800

seq1  GTATCGATGTACACATAATATAAATGTTATGCATAATCCAAATGTCACTT  803
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGATGTACACATAATATAAATGTTATGCATAATCCAAATGTCACTT  850

seq1  CACTAATATTTATAAGATTTAGCAGCCTGAGGGGTTAGTGAATTGGTTGT  853
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATATTTATAAGATTTAGCAGCCTGAGGGGTTAGTGAATTGGTTGT  900

seq1  CATTGTGAGGGAGGAGGCAAAGGAGAGTTATGAAAATAGTCTAAGGCCAG  903
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGAGGGAGGAGGCAAAGGAGAGTTATGAAAATAGTCTAAGGCCAG  950

seq1  CTGTGGGAACCTCCTTACACTTAGCAGAGAAGGAGAACTAGCTGTTGAGT  953
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGAACCTCCTTACACTTAGCAGAGAAGGAGAACTAGCTGTTGAGT  1000

seq1  GGACTCAAGAGTTAAACTCAAGCAAATCTAAGCCTCTTGCTTTCTGCAAC  1003
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAGAGTTAAACTCAAGCAAATCTAAGCCTCTTGCTTTCTGCAAC  1050

seq1  CTCTCCTCACCCCAGTATCCTAGACTTCCTACTGACTGCCTGGTTGTAAC  1053
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCACCCCAGTATCCTAGACTTCCTACTGACTGCCTGGTTGTAAC  1100

seq1  CCTTTCAGTCAGGAGCAGAGGGTAGGTGGAATTC  1087
      ||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGTCAGGAGCAGAGGGTAGGTGGAATTC  1134


| Home | SequenceCutter | Blast | Download |