BAC Information

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BAC

Clone NameB6Ng01-224P23
Chromosome6 (Build37)
Map Location 89,577,774 - 89,578,476
singlet/doubletsinglet
Overlap genenone
Upstream geneMgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839, 4930512J16Rik, Plxna1, Chchd6
Downstream geneTxnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8, V1rb3, LOC100043191, V1r-ps5, V1ra9, BC048671, Chst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224P23.bB6Ng01-224P23.g
ACCGA039303GA039304
length7081,186
definitionB6Ng01-224P23.b B6Ng01-224P23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacgattcctgttctttatattaggtctgattcctgagcaacacg
tccctgttgactgactctggcggctgttccacaggggcactagaaagact
aatgctcagattcttaaaccaactcatagatttgcaaacagatctgagca
gctagcagcacctatagctttgcatgctgagcagaggttcccgcatgact
gtgtctaagcgctgtaaccctaccacacttcttccaaccctcctctactt
ccctgttccagcacttctggacaggttggcttggtaagacttggagggtg
agtagatccttaagaatcgaaacaaagtggaggtatcttttctggtggaa
ggtacacgaagaggagagagtcaagatgtgtcagaatctgtaggatgtga
gactcacagactctgggttaagtcaggaaatgatgtcagttgcgcaatgc
ataagtggttgaaagggaaagcaaggctggtaaagaactgatagggacca
tggtgagtgtggtgactggcgagagtcttcccttagacgtgttattgtgc
taaccttgcggaaccatggggtctatgcatcattaagtgcgactggacca
gacacagaaagcctactttttcagacttcccagtcctcttcatttttgct
ttttggcaagaaaagccctgatttgtccagctgtcagaaaggaaaggagg
gagggggg
gaattctcacctgacaaatactgaatggcaaacaagcacctgaaaaaatg
ttcaagatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccattctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtgggcactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagattggagctgagatga
aaggatggaccacgtagagactgccatatccagggatccaccccataatc
agcatccaaacactgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgctggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagatagtagcccaaggagctaatggtatctgcaacct
atagtggaacacattatgaagtagccagtacccggagcttcttgactcta
gctgcataatatatccaaaggatgggcttagtcgtcaatcattgaaagga
aagccattgaactttgcccaaacctttatgctctagttacatggtaatcg
gaggctataaagggtgaatgggtttggccatcgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_89577774_89578476
seq2: B6Ng01-224P23.b_44_751

seq1  GAATTCAAGATTCCTGTTCTTTATATTAGGTCTGATTCCTGAGCAACACG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGATTCCTGTTCTTTATATTAGGTCTGATTCCTGAGCAACACG  50

seq1  TCCCTGTTGACTGACTCTGGCGGCTGTTCCACAGTGGCACTAGAAAGACT  100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCCCTGTTGACTGACTCTGGCGGCTGTTCCACAGGGGCACTAGAAAGACT  100

seq1  AATGCTCAGATTCTTAAACCAGCTCATAGATTTGCAAACAGATCTGAGCA  150
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATGCTCAGATTCTTAAACCAACTCATAGATTTGCAAACAGATCTGAGCA  150

seq1  GCTAGCAGCACCTATAGCTTTGCATGCTGAGCAGAGGTTCCCGCAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTAGCAGCACCTATAGCTTTGCATGCTGAGCAGAGGTTCCCGCATGACT  200

seq1  GTGTCTAAGCGCTGTAACCCTACCACACTTCTTCCAACCCTCCTCTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAAGCGCTGTAACCCTACCACACTTCTTCCAACCCTCCTCTACTT  250

seq1  CCCTGTTCCAGCACTTCTGGACAGGTTGGCTTGGTAAGACTTGGAGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCCAGCACTTCTGGACAGGTTGGCTTGGTAAGACTTGGAGGGTG  300

seq1  AGTAGATCCTTAGGAATCGAAGCAAAGTGGAGGTATCTTTTCTGGTGGAA  350
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  AGTAGATCCTTAAGAATCGAAACAAAGTGGAGGTATCTTTTCTGGTGGAA  350

seq1  GGCAGAGGAAGAGGAGAGAGTCAAGATGTGTCAGAATCTGTAGGATGTGA  400
      || | | |||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACGAAGAGGAGAGAGTCAAGATGTGTCAGAATCTGTAGGATGTGA  400

seq1  GACTCAGAGACTCTGGGTTAAGTCAGGAAATGAAATCAGTTGCGCAATGC  450
      |||||| ||||||||||||||||||||||||||  |||||||||||||||
seq2  GACTCACAGACTCTGGGTTAAGTCAGGAAATGATGTCAGTTGCGCAATGC  450

seq1  AGAAGTGGTTGAAAGGGAAAGCAAGGCTGGTAAAGAACTGATAGGGACCA  500
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGTTGAAAGGGAAAGCAAGGCTGGTAAAGAACTGATAGGGACCA  500

seq1  TGGTGAGTGTGGTGACTGGCAGAGAGTCATCCC-TAGACAGTGTTATTGT  549
      |||||||||||||||||||| ||||||| |||| ||||| ||||||||||
seq2  TGGTGAGTGTGGTGACTGGC-GAGAGTCTTCCCTTAGAC-GTGTTATTGT  548

seq1  GCTAACCTTGCGGAACCATGGGGTCTATGCATCAGTAAGTGGGACTGGAC  599
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  GCTAACCTTGCGGAACCATGGGGTCTATGCATCATTAAGTGCGACTGGAC  598

seq1  CAGACACAG-AAGCCTAC-TTTTCAGACTTCCCAGTCCTCTTCA-TTTTG  646
      ||||||||| |||||||| ||||||||||||||||||||||||| |||||
seq2  CAGACACAGAAAGCCTACTTTTTCAGACTTCCCAGTCCTCTTCATTTTTG  648

seq1  C-TTTTGGCAAGAAAAGCCCTGA-TTGTCCAGCTGTCAG-AAGGAAAGGA  693
      | ||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  CTTTTTGGCAAGAAAAGCCCTGATTTGTCCAGCTGTCAGAAAGGAAAGGA  698

seq1  GGGAGGGGGG  703
      ||||||||||
seq2  GGGAGGGGGG  708