BAC Information

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BAC

Clone NameB6Ng01-225F16
Chromosome6 (Build37)
Map Location 142,899,030 - 143,049,987
singlet/doubletdoublet
Overlap geneSt8sia1, LOC665056, 5730419I09Rik
Upstream geneEG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037
Downstream geneEtnk1, D6Ertd474e, Sox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225F16.bB6Ng01-225F16.g
ACCGA039571GA039572
length1,0691,143
definitionB6Ng01-225F16.b B6Ng01-225F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,048,929 - 143,049,987)(142,899,030 - 142,900,149)
sequence
gaattcagttttgcccatgggcaaaattcctttctcaggaggactctttt
tgaaagggcgtttctggttcattaccacttcaagtaatttttctatcctg
ttttagtatttttgaagttaaaaagaccatgctgatatcttcatttagga
attttccattcctgataaattcagtgctgtgatttttttcccactggcat
tttcagtgttgatttcagtatttactacagagtgtattgccaatgctggg
tttgccatagtgtaggaagtgctcttgttccatcctgtgtgtgggcttca
accccaatcattttctgatagtctgaagcagtatctaataccccactttg
acaggctcatgatgtatctagagtggggtcaatttacagagacctagtga
ggtcttcttcgggctcatttctcacactgactacatgtaccgctggaggt
tcgtttcttgctgacttttagccagcactgtagacctttcctttaggcgt
gtgaatgcttaatacttagagagctggatgtgcaggcacaaacccatcac
cttagcacttgtgacaatacaccaggaagactgccacattcaaagccagc
ctgggctgcataccaaggagaggccagcaggcaagatgttgcctcaaaaa
agaaagttcacactgacacacaaagttcacactgacataaggaagtgtga
agtgccatctataacccagtacacagtacaattgcctgtgactgaaataa
gtctttgaagaaataatatttattttcactagctgagatgcgtgtgtgta
attttttgtcccttttccattttgttttttttttgttttttttttttttt
ttttccttttgaagccaaactttttcgtctgttgcccaggcttgctaaaa
actccgattgccatccttcctgcctcccactttcccaggttctggggttg
gacagggtgtggcgttccccacacctgacttcttaaccaggaggattctt
actggaaattctatagaagagccactactcgcaatcagtaccctctggtg
gccgtctcaagaacactaa
gaattctttactacgcattacatcaggcagatgcagatggaggagggagg
accccttcctggcctggtgaaggctcaaggctgtggttttagagaaagtg
aaaggggtagatgggctgtaactcccattccgggactgcagctttataac
cttaacctaggattcatcgtctcagcaaaatgtgtggtagctcgtgtggt
gactcttgcctggaatcccggtactcggggaggctggagctgaaaggatt
gctgcgaagttctgagccaacctgggctacatagtgagcagtagagcagc
ttaggctttaaagtgagaccctatctcaaaagaaaagatacaaataacaa
gactgaaatcctcagtgtgaagactaaacacctcctacaaaaaggaaggt
accgagccctggagaaaggccattcacccacaggataacagctaagttcc
ttcattttcttgggcttcagtctctccactaacacaccaggatgatgtca
ccctacagggtcaccaggatgatgtcataatacagagccaccaggatgtt
gtcagcactcatccagaacttatcagagggaacaacactgaacattcctt
gaatgctggtcactaccattaaagatccatcttgggcaaacagtatagcc
ttttctctatgaaagagggtcaataacatgttcctcacttagtgcttgtg
agtgttaaatgcaacatataacatataatgcataaaacagaattaacata
gggaaaccaaaaataaacaactatattactagagatatcattgtttagaa
aactaagcttaaaatctggggttagcgcaacagacacattgcgcagacag
cctgtaccatggtgctcacacgtaattggggctcggtaaatgttaattaa
atctgaacttaatttcccatattgcatctctattttaaaagcttttggga
ctgtgtacaagtggattaaattctttggaacttgatacacaagggaacaa
tctcacaggcgtcttttgcttgggttcttttcgtttttgtcacagggttt
ttcagttggctttcattccttggagggtgcagcaagggtgagggttacct
tggtttaacatgaccccgggttccaaaggctactatagagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143048929_143049987
seq2: B6Ng01-225F16.b_46_1114 (reverse)

seq1  TTAGTGTTTCCTGAGACGGCCACCAGGAAGGGGTACTGA-TGCGAGTAGT  49
      |||||| ||| |||||||||||||||    ||||||||| ||||||||||
seq2  TTAGTG-TTCTTGAGACGGCCACCAG---AGGGTACTGATTGCGAGTAGT  46

seq1  GG-TTTTCTAT-GAATTT-CAGTAAGAATCCT-CTGGTTA--GAGTCAGG  93
      || | |||||| |||||| ||||||||||||| |||||||   |||||||
seq2  GGCTCTTCTATAGAATTTCCAGTAAGAATCCTCCTGGTTAAGAAGTCAGG  96

seq1  TGTGGGG-ACG-CACA-CCTGTC--AACCCAGAA-CTTGGAAAGT-GGAG  136
      ||||||| ||| |||| ||||||  | ||||||| || ||||||| ||||
seq2  TGTGGGGAACGCCACACCCTGTCCAACCCCAGAACCTGGGAAAGTGGGAG  146

seq1  GCAGG-AGGATTGC-ATC-GAGTTCTTAGCCAGCCTGGGCAACAGACG-A  182
      ||||| ||||| || ||| ||||| ||||| ||||||||||||||||| |
seq2  GCAGGAAGGATGGCAATCGGAGTTTTTAGCAAGCCTGGGCAACAGACGAA  196

seq1  AAAGTTTGGCTCAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  232
      |||||||||||  |||| |    ||||||||||||||||||| |||||||
seq2  AAAGTTTGGCTTCAAAAGG----AAAAAAAAAAAAAAAAAAACAAAAAAA  242

seq1  AAAAAAAAAGGAAAAGGGACAAAAAATTACACACACGCATCTCAGCTAGT  282
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAATGGAAAAGGGACAAAAAATTACACACACGCATCTCAGCTAGT  292

seq1  GAAAATAAATATTATTTCTTCAAAGACTTATTTCAGTCACAGGCAATTGT  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAATATTATTTCTTCAAAGACTTATTTCAGTCACAGGCAATTGT  342

seq1  ACTGTGTACTGGGTTATAGATGGCACTTCACACTTCCTTATGTCAGTGTG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTACTGGGTTATAGATGGCACTTCACACTTCCTTATGTCAGTGTG  392

seq1  AACTTTGTGTGTCAGTGTGAACTTTCTTTTTTGAGGCAACATCTTGCCTG  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTGTGTCAGTGTGAACTTTCTTTTTTGAGGCAACATCTTGCCTG  442

seq1  CTGGCCTCTCCTTGGTATGCAGCCCAGGCTGGCTTTGAATGTGGCAGTCT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTCCTTGGTATGCAGCCCAGGCTGGCTTTGAATGTGGCAGTCT  492

seq1  TCCTGGTGTATTGTCACAAGTGCTAAGGTGATGGGTTTGTGCCTGCACAT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGTATTGTCACAAGTGCTAAGGTGATGGGTTTGTGCCTGCACAT  542

seq1  CCAGCTCTCTAAGTATTAAGCATTCACACGCCTAAAGGAAAGGTCTACAG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTCTAAGTATTAAGCATTCACACGCCTAAAGGAAAGGTCTACAG  592

seq1  TGCTGGCTAAAAGTCAGCAAGAAACGAACCTCCAGCGGTACATGTAGTCA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTAAAAGTCAGCAAGAAACGAACCTCCAGCGGTACATGTAGTCA  642

seq1  GTGTGAGAAATGAGCCCGAAGAAGACCTCACTAGGTCTCTGTAAATTGAC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGAAATGAGCCCGAAGAAGACCTCACTAGGTCTCTGTAAATTGAC  692

seq1  CCCACTCTAGATACATCATGAGCCTGTCAAAGTGGGGTATTAGATACTGC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTAGATACATCATGAGCCTGTCAAAGTGGGGTATTAGATACTGC  742

seq1  TTCAGACTATCAGAAAATGATTGGGGTTGAAGCCCACACACAGGATGGAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTATCAGAAAATGATTGGGGTTGAAGCCCACACACAGGATGGAA  792

seq1  CAAGAGCACTTCCTACACTATGGCAAACCCAGCATTGGCAATACACTCTG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCACTTCCTACACTATGGCAAACCCAGCATTGGCAATACACTCTG  842

seq1  TAGTAAATACTGAAATCAACACTGAAAATGCCAGTGGGAAAAAAATCACA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATACTGAAATCAACACTGAAAATGCCAGTGGGAAAAAAATCACA  892

seq1  GCACTGAATTTATCAGGAATGGAAAATTCCTAAATGAAGATATCAGCATG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAATTTATCAGGAATGGAAAATTCCTAAATGAAGATATCAGCATG  942

seq1  GTCTTTTTAACTTCAAAAATACTAAAACAGGATAGAAAAATTACTTGAAG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTAACTTCAAAAATACTAAAACAGGATAGAAAAATTACTTGAAG  992

seq1  TGGTAATGAACCAGAAACGCCCTTTCAAAAAGAGTCCTCCTGAGAAAGGA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGAACCAGAAACGCCCTTTCAAAAAGAGTCCTCCTGAGAAAGGA  1042

seq1  ATTTTGCCCATGGGCAAAACTGAATTC  1059
      |||||||||||||||||||||||||||
seq2  ATTTTGCCCATGGGCAAAACTGAATTC  1069

seq1: chr6_142899030_142900149
seq2: B6Ng01-225F16.g_69_1211

seq1  GAATTCTTTACTACGCA-GACATCAGGCAGATGCAGATGGAGGAGGGAGG  49
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTACGCATTACATCAGGCAGATGCAGATGGAGGAGGGAGG  50

seq1  ACCCCTTCCTGGCCTGGTGAAGGCTCAAGGCTGTGGTTTTAGAGAAAGTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTCCTGGCCTGGTGAAGGCTCAAGGCTGTGGTTTTAGAGAAAGTG  100

seq1  AAAGGGGTAGATGGGCTGTAACTCCCATTCCGGGACTGCAGCTTTATAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGTAGATGGGCTGTAACTCCCATTCCGGGACTGCAGCTTTATAAC  150

seq1  CTTAACCTAGGATTCATCGTCTCAGCAAAATGTGTGGTAGCTCGTGTGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACCTAGGATTCATCGTCTCAGCAAAATGTGTGGTAGCTCGTGTGGT  200

seq1  GACTCTTGCCTGGAATCCCGGTACTCGGGGAGGCTGGAGCTGAAAGGATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTGCCTGGAATCCCGGTACTCGGGGAGGCTGGAGCTGAAAGGATT  250

seq1  GCTGCGAAGTTCTGAGCCAACCTGGGCTACATAGTGAGCAGTAGAGCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGAAGTTCTGAGCCAACCTGGGCTACATAGTGAGCAGTAGAGCAGC  300

seq1  TTAGGCTTTAAAGTGAGACCCTATCTCAAAAGAAAAGATACAAATAACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTTAAAGTGAGACCCTATCTCAAAAGAAAAGATACAAATAACAA  350

seq1  GACTGAAATCCTCAGTGTGAAGACTAAACACCTCCTACAAAAAGGAAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAATCCTCAGTGTGAAGACTAAACACCTCCTACAAAAAGGAAGGT  400

seq1  ACCGAGCCCTGGAGAAAGGCCATTCACCCACAGGATAACAGCTAAGTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGCCCTGGAGAAAGGCCATTCACCCACAGGATAACAGCTAAGTTCC  450

seq1  TTCATTTTCTTGGGCTTCAGTCTCTCCACTAACACACCAGGATGATGTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTTGGGCTTCAGTCTCTCCACTAACACACCAGGATGATGTCA  500

seq1  CCCTACAGGGTCACCAGGATGATGTCATAATACAGAGCCACCAGGATGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACAGGGTCACCAGGATGATGTCATAATACAGAGCCACCAGGATGTT  550

seq1  GTCAGCACTCATCCAGAACTTATCAGAGGGAACAACACTGAACATTCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCACTCATCCAGAACTTATCAGAGGGAACAACACTGAACATTCCTT  600

seq1  GAATGCTGGTCACTACCATTAAAGATCCATCTTGGGCAAACAGTATAGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTGGTCACTACCATTAAAGATCCATCTTGGGCAAACAGTATAGCC  650

seq1  TTTTCTCTATGAAAGAGGGTCAATAACATGTTCCTCACTTAGTGCTTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTATGAAAGAGGGTCAATAACATGTTCCTCACTTAGTGCTTGTG  700

seq1  AGTGTTAAATGCAACATATAACATATAATGCATAAAACAGAATTAACATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAAATGCAACATATAACATATAATGCATAAAACAGAATTAACATA  750

seq1  GGGAAACCAAAAATAAACAACTATATTACTAGAGATATCATTGTTTAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCAAAAATAAACAACTATATTACTAGAGATATCATTGTTTAGAA  800

seq1  AACTAAGCTTAAAATCTGGGGTTAGCGCAACAGACACATTGCGCAGACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCTTAAAATCTGGGGTTAGCGCAACAGACACATTGCGCAGACAG  850

seq1  CCTGTACCATGGTGCTCACACGTAATTGGGGCTCGGTAAATGTTAATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCATGGTGCTCACACGTAATTGGGGCTCGGTAAATGTTAATTAA  900

seq1  ATCTGAACTTAATTTCCCATATTGCATCTCTATTTTAAAAGCTTTT-GGA  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCTGAACTTAATTTCCCATATTGCATCTCTATTTTAAAAGCTTTTGGGA  950

seq1  CTGTGTACAAGTG--ATAAAT--CTTGGAACCTGATACACAA-GGAACAA  993
      |||||||||||||   |||||   ||||||| |||||||||| |||||||
seq2  CTGTGTACAAGTGGATTAAATTCTTTGGAACTTGATACACAAGGGAACAA  1000

seq1  TCTCACA-GCGTC-TTTGC-TGGGT--CTTTCG-TTTTGTCACAGGG-TT  1036
      ||||||| ||||| ||||| |||||   ||||| ||||||||||||| ||
seq2  TCTCACAGGCGTCTTTTGCTTGGGTTCTTTTCGTTTTTGTCACAGGGTTT  1050

seq1  TTCAGTGGGCTTTCAT--CCTGGA-GGTGCAGCA--GGTGAGG--TACC-  1078
      |||||| |||||||||  | |||| |||||||||  |||||||  |||| 
seq2  TTCAGTTGGCTTTCATTCCTTGGAGGGTGCAGCAAGGGTGAGGGTTACCT  1100

seq1  TGGTT--ACATGACCC--GGTCCCCAAAAGGGCCACTATAGAGACT  1120
      |||||  |||||||||  ||| ||   || ||| ||||||||||||
seq2  TGGTTTAACATGACCCCGGGTTCC---AAAGGCTACTATAGAGACT  1143