BAC Information

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BAC

Clone NameB6Ng01-225L23
Chromosome6 (Build37)
Map Location 69,204,773 - 69,205,873
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71
Downstream geneGm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225L23.bB6Ng01-225L23.g
ACCGA039863GA039864
length1,1281,113
definitionB6Ng01-225L23.b B6Ng01-225L23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatgatttgcttctaatatgcaatacagcctgtactaaagattt
ctttctcagtgggattccctggctctttcatggtattcccttgtttgggt
gcaatttgctactgtccttagtaaattctctggagaccagctctgagcta
ctggctccctcttttgtaatgcttaattagttactgaataggtaactacc
ttactgcattcttgcctgattccaagtttctgtgatcttggaacactggg
gagacttaactgtatcagaatttaatcttaaaaggcatttataataaaat
attaaaagagagctcatagttccatacaccagactaatgcaggaatgggg
tatgagtatgtgggtaaatgaaaatgccaaagctccaggatgtgagtttc
cttaaaactcttttcctcctgagtgcttacagacttttcatcctgtcaaa
cagacttgaccttagtgcatggcatttcccagtgtgcatagcataaatta
ttggtctcctctactcattctcttcattgctgttactacgggaaaaacca
acacatcaactcctaacatttaataaaaccctttttacccatcaatatag
ctctaggttttctttgtctatttcctagtttggacttacattatctgtag
cagaaacctctctgtcccttttctttcccatgtcccctttcagaatgact
gtcactgtttccactctgtattttcctcttcgattttacacttctcattt
atctttaaactagtatttatagctattacattgttgttttgcacatgttt
ctaagttttgggttgggatgataggtgtttatgcttcctattttaagccc
ttttgagaaccctaatcacttctctgaatttgttacttttttgatgtcac
caaagctttggaaagagacatttcctaaagaccagaaagacagatgggtc
tttcaggaaatgggcagaataaaccatgaatgcagaacactgcttgagag
agcacctttttgtaggaccctttagggataaccaatcacaccttgcttcc
ctttcccttgcattgggtaagattctacaaggggcgaccttcagcttgta
gccttgcttaatggctccacacagtgaa
gaattcccatgacatccttccttacccaggaatcagaatagtaagatcag
cagaagttgagaaggagacatcatgtgtgtgttgttacctgacattgaca
gactcatagaaaggatgtgaccagactattaagaagtacttttgtgaatg
ggtcacctcactcaggatggtatcctccagatgcatccattcgtctaaga
acttcataaattcattgtttttaatggctgagtagtactccattgggcaa
atgtaccacattttctgtatccattcttctgttgagggacaactgggttc
tttccaacttctggctactataaataaacctactatgaacagagtggagc
atgtgtccttattacaagttggagcatcttttgggtatatgcccaggaga
ggtatttctggatcttactctggaggatatcaccctgagtgaggtaaccc
agtcacaaaagaacacacatgatatgcactctccgataaatggatagttg
cccagaaacttagactacccaagattcaatttacaaaacacatgaaactc
aagaagaaggaagaccaaaatgtgggtactttgtttcttcttagaatcgg
gaacaaaatacacagggaaagagttacagagacaaaggtcggagctgaga
cagtagacaggactatgcagagaataccccacctggagatccatctccat
actaccaccaaacccagacaatattgcatatgccagcaagattttgctga
caggaccctgatatagctctttcttgtgagactatgccagtacctggcaa
atacagaattgaatgcatacagtcatctattggatggaacacaggtcccc
taaagaagaagctagagaaagtaacctagaagctgaaggaatctgcaatg
ctataggaggatcaacaatatgaactaaccagtactccacagaattgtgt
ctctagttgcatatgtagcagaggatggcctaatcgtcatcaatggggag
gagagtcccttggtctttctaagattattatgccccaatacagagatgtc
agtccagtagctggagtccgtgggttggggagcaaggttggggaacaggt
taagggaagggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_69204773_69205873
seq2: B6Ng01-225L23.b_45_1172

seq1  GAATTCAATGATTTGCTTCTAATATGCAATACAGCCTGTACTAAAGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGATTTGCTTCTAATATGCAATACAGCCTGTACTAAAGATTT  50

seq1  CTTTCTCAGTGGGATTCCCTGGCTCTTTCATGGTATTCCCTTGTTTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGTGGGATTCCCTGGCTCTTTCATGGTATTCCCTTGTTTGGGT  100

seq1  GCAATTTGCTACTGTCCTTAGTAAATTCTCTGGAGACCAGCTCTGAGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGCTACTGTCCTTAGTAAATTCTCTGGAGACCAGCTCTGAGCTA  150

seq1  CTGGCTCCCTCTTTTGTAATGCTTAATTAGTTACTGAATAGGTAACTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCCTCTTTTGTAATGCTTAATTAGTTACTGAATAGGTAACTACC  200

seq1  TTACTGCATTCTTGCCTGATTCCAAGTTTCTGTGATCTTGGAACACTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCATTCTTGCCTGATTCCAAGTTTCTGTGATCTTGGAACACTGGG  250

seq1  GAGACTTAACTGTATCAGAATTTAATCTTAAAAGGCATTTATAATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTAACTGTATCAGAATTTAATCTTAAAAGGCATTTATAATAAAAT  300

seq1  ATTAAAAGAGAGCTCATAGTTCCATACACCAGACTAATGCAGGAATGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGAGAGCTCATAGTTCCATACACCAGACTAATGCAGGAATGGGG  350

seq1  TATGAGTATGTGGGTAAATGAAAATGCCAAAGCTCCAGGATGTGAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTATGTGGGTAAATGAAAATGCCAAAGCTCCAGGATGTGAGTTTC  400

seq1  CTTAAAACTCTTTTCCTCCTGAGTGCTTACAGACTTTTCATCCTGTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTCTTTTCCTCCTGAGTGCTTACAGACTTTTCATCCTGTCAAA  450

seq1  CAGACTTGACCTTAGTGCATGGCATTTCCCAGTGTGCATAGCATAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTGACCTTAGTGCATGGCATTTCCCAGTGTGCATAGCATAAATTA  500

seq1  TTGGTCTCCTCTACTCATTCTCTTCATTGCTGTTACTACGGGAAAAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCCTCTACTCATTCTCTTCATTGCTGTTACTACGGGAAAAACCA  550

seq1  ACACATCAACTCCTAACATTTAATAAAACCCTTTTTACCCATCAATATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAACTCCTAACATTTAATAAAACCCTTTTTACCCATCAATATAG  600

seq1  CTCTAGGTTTTCTTTGTCTATTTCCTAGTTTGGACTTACATTATCTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTTTTCTTTGTCTATTTCCTAGTTTGGACTTACATTATCTGTAG  650

seq1  CAGAAACCTCTCTGTCCCTTTTCTTTCCCATGTCCCCTTTCAGAATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTCTCTGTCCCTTTTCTTTCCCATGTCCCCTTTCAGAATGACT  700

seq1  GTCACTGTTTCCACTCTGTATTTTCCTCTTCGATTTTACACTTCTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTTTCCACTCTGTATTTTCCTCTTCGATTTTACACTTCTCATTT  750

seq1  ATCTTTAAACTAGTATTTATAGCTATTACATTGTTGTTTTGCACATGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAACTAGTATTTATAGCTATTACATTGTTGTTTTGCACATGTTT  800

seq1  CTAAGTTTTGGGTTGGGATGATAGGTGTTTATGCTTCCTA-TTTAAGCCC  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTAAGTTTTGGGTTGGGATGATAGGTGTTTATGCTTCCTATTTTAAGCCC  850

seq1  TTTTGAGAACCCTAATCACTTCTCTGAAATTTGTTAC-TTTTTGATGTCA  898
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  TTTTGAGAACCCTAATCACTTCTCTG-AATTTGTTACTTTTTTGATGTCA  899

seq1  CCAAAGCTATGGAAAGAGACA-TTCCTAAAGA-CAGAAAGACAGAT-GGT  945
      |||||||| |||||||||||| |||||||||| ||||||||||||| |||
seq2  CCAAAGCTTTGGAAAGAGACATTTCCTAAAGACCAGAAAGACAGATGGGT  949

seq1  C-TTCA-GAAAT-GGCAG-ATAAA-CATG-ATGCAGAACACTGC-TGAGA  988
      | |||| ||||| ||||| ||||| |||| |||||||||||||| |||||
seq2  CTTTCAGGAAATGGGCAGAATAAACCATGAATGCAGAACACTGCTTGAGA  999

seq1  GAGCACC--TTTGTA-GACCCTTTA-GGATAAACAATCACA-CTTGCTTC  1033
      |||||||  |||||| ||||||||| |||||| |||||||| ||||||||
seq2  GAGCACCTTTTTGTAGGACCCTTTAGGGATAACCAATCACACCTTGCTTC  1049

seq1  C--TTTCCTTGCATTGGGT-AGA-TCTAC-AGGGGCGAC--TCAGC-TGT  1075
      |  || ||||||||||||| ||| ||||| |||||||||  ||||| |||
seq2  CCTTTCCCTTGCATTGGGTAAGATTCTACAAGGGGCGACCTTCAGCTTGT  1099

seq1  AGGCTTGCTTA--TGCT-CACACAGTGAA  1101
      || ||||||||   ||| |||||||||||
seq2  AGCCTTGCTTAATGGCTCCACACAGTGAA  1128