BAC Information

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BAC

Clone NameB6Ng01-226B01
Chromosome6 (Build37)
Map Location 26,392,713 - 26,531,761
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr37, Pot1a, EG626912, LOC100041210
Downstream geneLOC100041247, Grm8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226B01.bB6Ng01-226B01.g
ACCGA040100GA040101
length1,1681,172
definitionB6Ng01-226B01.b B6Ng01-226B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,392,713 - 26,393,888)(26,530,585 - 26,531,761)
sequence
gaattcagatgttatgtcaagtagaattaacttatactataaatctcctt
atatttacaaagactagatatgttgaatgaaactactagttttactttta
agatgatgtttgtaaaaacaaatgcaaaatcattctcaggcatgtgcata
aatatctgtgtccctttcaaacattgttcattaatactctcctttatttt
aattgatctttctttttctcaacagctccagagacttactgacactttaa
tttgtgtttgtttgtacttataagtagattgattatttacttctgagttt
atattttctatattatttgtaagttgtctgaaacggaagatgtaactata
atattttgctatttatacattggataattaaatattttaattaatttctc
tcctttagacattcagaaatgaaggtccataaaacattccatgcaacaat
tgtaagcgaataaagaaaatgaaactatgaacattatgacaagtgaaaaa
atgattaataatataggagagtccaagtcagatgaattcagtaagtggct
ctcttggtgacactctaaaacaaatcgccttttaacttataaaaagtggt
aaaaatgcacacagttattaggttctactaactgactgaaaaatcaggat
ctagaaagcaaaaggatcattattaaaactaaaccaaagatagtcatgaa
atccatgcaaagagagcttataggagaggtgaaatgaccatgaaaacttt
gcatgcctgctacatctctccgggtcattgcaatgttctggaaagtgtct
tacattatctacattaggccagtaaaacacttggcaattaaagagacaga
ttttcacttcatacagacacagagaataagatacaaacagtattttagaa
gtgaaatctgttttactcacgaacacagtcattttgagtataaagtgatt
tctattacaacctttctgaaagtataagctgtcaagttttgcataataat
accatgcaagtttttaaaagagaagtactaatttacaaatatatgtttta
ataagagtataactgcatagcagtattctctaatgaattctttgtagcta
tagccaatgaatgtctaatcctttataacttatcttttactatcagttag
aatataactccattaaca

gaattcttaattttttcatgtttattcaaaattagttatatgtattaaat
tatgactctgtaaagtatttatcctgggaatggtagaaatttttatttct
gagaaagagttgagatataggttcacaagtgtagctgcgatccaaaagca
aaacacatttcagctgatacaggagaatcatgagttctaggcaaacaagg
ggtacagagccaatttggagcctaaaagagattgtctaaaataacaggag
tttgcagtcttcagtttatacttacaagagaataaaacatgtcttagttt
atgaaccttagagtagacatcaattgttgacataccagtaaaaatgactc
ctaattctttttaaatgacttctctcttgtcttaatcctgtttcctatgg
gttccagctgacaggagaagtatcatattctcccttgaatttcaggccca
tgtgtgttgaactgacaatttacaagactgagatagagaacacaaagata
atattcatggcctggaacaaaagagtacatccttgtttgtcaaacacttc
tactactaggggaacacattctacaaataattgccagctttccccaaccc
atgcttttctgccctctgactcagctatcacaaaacagaagtgggttccc
aataataacagaggaagctatgcctagatcccctctatatacgcagctga
atgcattttctacttatgtatactcatgagattcacagttttctacagtg
gcagtctcagttccaatctgaattttttggtttatatgtacacttaggta
tcttaaaattcaacatccattttgaagatacaaatgaaacagtcttggag
gaggatgctgtctgtctcctatatatgaagtacatttcttgagctccaga
aatcactcagcagactcttattcttacataagaaatccaagaggaaatga
ggtttctctgactttttctgacatttgggtttcagtttctataactcagc
ccagtcttaatattcttcacattttattattctaaccggtcaaagactca
aaaagtaatctggaaagtatcaatttctgtcagctatttgttctccactg
tgagatattgaggtattctgttggaatctcatctggatataccatggacg
acctactcctcaaaacctatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_26392713_26393888
seq2: B6Ng01-226B01.b_46_1213

seq1  GAATTCAGATGTTATGTCAAGTAGAATTAACTTATACTATAAATCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTTATGTCAAGTAGAATTAACTTATACTATAAATCTCCTT  50

seq1  ATATTTACAAAGACTAGATATGTTGAATGAAACTACTAGTTTTACTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACAAAGACTAGATATGTTGAATGAAACTACTAGTTTTACTTTTA  100

seq1  AGATGATGTTTGTAAAAACAAATGCAAAATCATTCTCAGGCATGTGCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGTTTGTAAAAACAAATGCAAAATCATTCTCAGGCATGTGCATA  150

seq1  AATATCTGTGTCCCTTTCAAACATTGTTCATTAATACTCTCCTTTATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTGTGTCCCTTTCAAACATTGTTCATTAATACTCTCCTTTATTTT  200

seq1  AATTGATCTTTCTTTTTCTCAACAGCTCCAGAGACTTACTGACACTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCTTTCTTTTTCTCAACAGCTCCAGAGACTTACTGACACTTTAA  250

seq1  TTTGTGTTTGTTTGTACTTATAAGTAGATTGATTATTTACTTCTGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTGTTTGTACTTATAAGTAGATTGATTATTTACTTCTGAGTTT  300

seq1  ATATTTTCTATATTATTTGTAAGTTGTCTGAAACGGAAGATGTAACTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTATATTATTTGTAAGTTGTCTGAAACGGAAGATGTAACTATA  350

seq1  ATATTTTGCTATTTATACATTGGATAATTAAATATTTTAATTAATTTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGCTATTTATACATTGGATAATTAAATATTTTAATTAATTTCTC  400

seq1  TCCTTTAGACATTCAGAAATGAAGGTCCATAAAACATTCCATGCAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGACATTCAGAAATGAAGGTCCATAAAACATTCCATGCAACAAT  450

seq1  TGTAAGCGAATAAAGAAAATGAAACTATGAACATTATGACAAGTGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCGAATAAAGAAAATGAAACTATGAACATTATGACAAGTGAAAAA  500

seq1  ATGATTAATAATATAGGAGAGTCCAAGTCAGATGAATTCAGTAAGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAATAATATAGGAGAGTCCAAGTCAGATGAATTCAGTAAGTGGCT  550

seq1  CTCTTGGTGACACTCTAAAACAAATCGCCTTTTAACTTATAAAAAGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTGACACTCTAAAACAAATCGCCTTTTAACTTATAAAAAGTGGT  600

seq1  AAAAATGCACACAGTTATTAGGTTCTACTAACTGACTGAAAAATCAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCACACAGTTATTAGGTTCTACTAACTGACTGAAAAATCAGGAT  650

seq1  CTAGAAAGCAAAAGGATCATTATTAAAACTAAACCAAAGATAGTCATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAGCAAAAGGATCATTATTAAAACTAAACCAAAGATAGTCATGAA  700

seq1  ATCCATGCAAAGAGAGCTTATAGGAGAGGTGAAATGACCATGAAAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGCAAAGAGAGCTTATAGGAGAGGTGAAATGACCATGAAAACTTT  750

seq1  GCATGCCTGCTACATCTCTCCGGGTCATTGCAATGTTCTGGAAAGTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTGCTACATCTCTCCGGGTCATTGCAATGTTCTGGAAAGTGTCT  800

seq1  TACATTATCTACATTAGGCCAGTAAAACACTTGGCAATTAAAGAGACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTATCTACATTAGGCCAGTAAAACACTTGGCAATTAAAGAGACAGA  850

seq1  TTTTCACTTCATACAGACACAGAGAATAAGATACAAACAGTATTTTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTCATACAGACACAGAGAATAAGATACAAACAGTATTTTAGAA  900

seq1  GTGAAATCTGTTTTACTCACGAACACAGTCATTTTGAGTATAAAGTGATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATCTGTTTTACTCACGAACACAGTCATTTTGAGTATAAAGTGATT  950

seq1  TCTATTACAACC-TTCTGAAAGTATAAGCTGTCAAGTTTTGCATAATAAT  999
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTATTACAACCTTTCTGAAAGTATAAGCTGTCAAGTTTTGCATAATAAT  1000

seq1  ACCATGCAAGTTTTTAAAAGAGAAGTACTAATTTACAAATATATGTTTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCAAGTTTTTAAAAGAGAAGTACTAATTTACAAATATATGTTTTA  1050

seq1  ATAAGAGTATAACTGCCTTAGCAGTATTCTCTAAATTGAAATTCTTTGTA  1099
      ||||||||||||||| | ||||||||||||||||  || |||||||||||
seq2  ATAAGAGTATAACTG-CATAGCAGTATTCTCTAA--TG-AATTCTTTGTA  1096

seq1  GCTATTAGCCAAATGAATGTCTTATTCCTTTTATAAATTATCTTTTAACT  1149
      |||| ||||| ||||||||||| ||  | ||||||| ||||||||| |||
seq2  GCTA-TAGCC-AATGAATGTCTAAT--CCTTTATAACTTATCTTTT-ACT  1141

seq1  ATCAGTTAGATTATAACTTCATTAACA  1176
      |||||||||| ||||||| ||||||||
seq2  ATCAGTTAGAATATAACTCCATTAACA  1168


seq1: chr6_26530585_26531761
seq2: B6Ng01-226B01.g_66_1237 (reverse)

seq1  ACATA-GTTTTGA-GAGTA-GTCGTCCATGTGTATACTCAGATGGAGAAT  47
      ||||| ||||||| ||||| |||||||||| |||||  ||||| |||| |
seq2  ACATAGGTTTTGAGGAGTAGGTCGTCCATG-GTATATCCAGAT-GAGATT  48

seq1  CCAACAG-ATACTTCAAATTATTTCTCCACAGTGGAGA--CAATAGCTGA  94
      ||||||| |||| |||    || ||| |||||||||||   |||||||||
seq2  CCAACAGAATACCTCA----ATATCT-CACAGTGGAGAACAAATAGCTGA  93

seq1  CAGAAATGGATTGGCTTTTCAGATTTACTTTTTGGAGTCTTTGAACCGGT  144
      ||||||| |||   |||| |||| ||||||||| ||||||||| ||||||
seq2  CAGAAATTGAT--ACTTTCCAGA-TTACTTTTT-GAGTCTTTG-ACCGGT  138

seq1  TAG-ATAATAAAATGTGAAG-ATATTAAGAACTGGGCTGAGTTATAGAAA  192
      ||| |||||||||||||||| |||||||| ||||||||||||||||||||
seq2  TAGAATAATAAAATGTGAAGAATATTAAG-ACTGGGCTGAGTTATAGAAA  187

seq1  CTGAAA-CCAAATGTCAGAAAAAGTCAGAGAAACCTCATTTCCTCTTGGA  241
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACCCAAATGTCAGAAAAAGTCAGAGAAACCTCATTTCCTCTTGGA  237

seq1  TTTCTTATTGTAAGAATAAGAGTCTGCTGAGTGATTTCTGGAGCTCAAGA  291
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTA-TGTAAGAATAAGAGTCTGCTGAGTGATTTCTGGAGCTCAAGA  286

seq1  AATGTACTTCATATATAGGAGACAGACAGCATCCTCCTCCAAGACTGTTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTTCATATATAGGAGACAGACAGCATCCTCCTCCAAGACTGTTT  336

seq1  CATTTGTATCTTCAAAATGGATGTTGAATTTTAAGATACCTAAGTGTACA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTATCTTCAAAATGGATGTTGAATTTTAAGATACCTAAGTGTACA  386

seq1  TATAAACCAAAAAATTCAGATTGGAACTGAGACTGCCACTGTAGAAAACT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACCAAAAAATTCAGATTGGAACTGAGACTGCCACTGTAGAAAACT  436

seq1  GTGAATCTCATGAGTATACATAAGTAGAAAATGCATTCAGCTGCGTATAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATCTCATGAGTATACATAAGTAGAAAATGCATTCAGCTGCGTATAT  486

seq1  AGAGGGGATCTAGGCATAGCTTCCTCTGTTATTATTGGGAACCCACTTCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGATCTAGGCATAGCTTCCTCTGTTATTATTGGGAACCCACTTCT  536

seq1  GTTTTGTGATAGCTGAGTCAGAGGGCAGAAAAGCATGGGTTGGGGAAAGC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGATAGCTGAGTCAGAGGGCAGAAAAGCATGGGTTGGGGAAAGC  586

seq1  TGGCAATTATTTGTAGAATGTGTTCCCCTAGTAGTAGAAGTGTTTGACAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATTATTTGTAGAATGTGTTCCCCTAGTAGTAGAAGTGTTTGACAA  636

seq1  ACAAGGATGTACTCTTTTGTTCCAGGCCATGAATATTATCTTTGTGTTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGATGTACTCTTTTGTTCCAGGCCATGAATATTATCTTTGTGTTCT  686

seq1  CTATCTCAGTCTTGTAAATTGTCAGTTCAACACACATGGGCCTGAAATTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAGTCTTGTAAATTGTCAGTTCAACACACATGGGCCTGAAATTC  736

seq1  AAGGGAGAATATGATACTTCTCCTGTCAGCTGGAACCCATAGGAAACAGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAATATGATACTTCTCCTGTCAGCTGGAACCCATAGGAAACAGG  786

seq1  ATTAAGACAAGAGAGAAGTCATTTAAAAAGAATTAGGAGTCATTTTTACT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACAAGAGAGAAGTCATTTAAAAAGAATTAGGAGTCATTTTTACT  836

seq1  GGTATGTCAACAATTGATGTCTACTCTAAGGTTCATAAACTAAGACATGT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTCAACAATTGATGTCTACTCTAAGGTTCATAAACTAAGACATGT  886

seq1  TTTATTCTCTTGTAAGTATAAACTGAAGACTGCAAACTCCTGTTATTTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTCTTGTAAGTATAAACTGAAGACTGCAAACTCCTGTTATTTTA  936

seq1  GACAATCTCTTTTAGGCTCCAAATTGGCTCTGTACCCCTTGTTTGCCTAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCTCTTTTAGGCTCCAAATTGGCTCTGTACCCCTTGTTTGCCTAG  986

seq1  AACTCATGATTCTCCTGTATCAGCTGAAATGTGTTTTGCTTTTGGATCGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGATTCTCCTGTATCAGCTGAAATGTGTTTTGCTTTTGGATCGC  1036

seq1  AGCTACACTTGTGAACCTATATCTCAACTCTTTCTCAGAAATAAAAATTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACACTTGTGAACCTATATCTCAACTCTTTCTCAGAAATAAAAATTT  1086

seq1  CTACCATTCCCAGGATAAATACTTTACAGAGTCATAATTTAATACATATA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATTCCCAGGATAAATACTTTACAGAGTCATAATTTAATACATATA  1136

seq1  ACTAATTTTGAATAAACATGAAAAAATTAAGAATTC  1177
      ||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTGAATAAACATGAAAAAATTAAGAATTC  1172


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