BAC Information

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BAC

Clone NameB6Ng01-226G12
Chromosome2 (Build37)6 (Build37)
Map Location 55,535,979 - 55,537,12241,534,563 - 41,534,746
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226G12.bB6Ng01-226G12.g
ACCGA040354GA040355
length1,134995
definitionB6Ng01-226G12.b B6Ng01-226G12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,535,979 - 55,537,122)(41,534,563 - 41,534,746)
sequence
gaattctacttctggaaggcaacctgcatagggactgatgtttaagaaca
gcttgaattttatttgcaaagggtggcagagttcccttaacaaagctcat
cttgctgttctcactgatggtgcctcctgcaatgctttacaacatcactg
caccaaatggctgtgcttttaatccactcattatagctctgagctcttta
agtcctgtagacacagagcttataactagaaacacaacagaaaaatatta
gcgtgttaagtgggaattctgttatgtctatgttctctgtgtaattatgt
ctaatttggtcagcatgtggacaaaacccttgcttctatacaggagtact
ttaaaagcagatatttttgaattgtatcttgagttttgttttatcaacac
caatggtgtgtatttacataagcattcacttttctgacttgaactgttag
caagctacaaggaattttaaatcaaaccagaaaaattctaatttttctca
tcagtgagaaaaaactaatgaagtagattatatagattggccaagataga
ctgcaattattctaagtcaattattcatttagcatttctttttatatatc
tcaaatagggtatatttattattcatcataaatgacctagttcctatttg
tacaattgaattacagaccaattcttctgtcaattttaaacaaatacaat
atatttttattctatcttgcatttcaatatgagataatattctctaacac
ttaaaatgttcttgtgatgaataaggagctttatcccctttaaaatcccc
caaaactaatagataattaatttaggatgctcagtattcattcatccagt
attttaagaactaagacttgaataataatataagtacttgatcatttttg
tagtaatgatagagttagagtttataggttatgggacaaacatatgaaaa
ataaggaccagttgctttaagcagccagagaaatcacaaaccaactaact
gaagtcagcactttgaaagaagaaggtggatgatcagatttgagtctatt
tcatctgcatagtgagtttggatgcttagctacctatattatacgtctca
aatacagcagctccaagaaacaagagatatatct

gaattccagactgttttccagagtggttgtataagcttgcaattccatca
gcaatggaggagtgtttctctttctccacatccttgccaacatctgctgt
cacctgaatttttgatcctagccattatgactggtgtgaggtggaatctc
agggttgttttgatttgcatttccctgatgattatggatgtttcaggata
gcatttgaaatgtaaatgaagaaaatatctaataaaaaattgaaaaaaaa
agaaaaaaaagatagcaatttaacataggaaccatgttttattactttca
cattttcatctatcatacattcttttattatgattattattattattaat
aatttatttatgcttatatgtaagtacattgtagctatcttcagacacac
cagaagaaggagtcagatctcattatgggtggttgtgagccaccatgtgg
ttgctgggatttgaactcaggaccttcacaagaacagtcaatgctctaaa
ccgctgagtcatctctccagccccctatcatacattctatcctgactgca
gttgcccctctctcactccctgtagtttcttccccctacctcccctttcc
ccagattcacctcgtctcggaaaagaacaggccttccatggacatcaacc
taataaggcataacaaaccacagttaagtccaggtacctcccatcatata
aaggctagacaagttgacccactaggaagaaaagtgtcccaaaaggcagg
caaaacagacagagacagactctgatcccactgttaggaataccacagaa
acactgagctacacaaccataaaatatatgcagaggccccagtattggct
gttcctcagaaaattgggaactaatcacctcaaggccatttttactagtt
tgggtatataccggaaagagattccatattaccaggctccctgatccctg
tgagctcacttgaattctggtcagttgattctgtgggacttgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55535979_55537122
seq2: B6Ng01-226G12.b_44_1177

seq1  GAATTCTACTTCTGGAAGGCAACCTGCATAGGGACTGATGTTTAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTCTGGAAGGCAACCTGCATAGGGACTGATGTTTAAGAACA  50

seq1  GCTTGAATTTTATTTGCAAAGGGTGGCAGAGTTCCCTTAACAAAGCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATTTTATTTGCAAAGGGTGGCAGAGTTCCCTTAACAAAGCTCAT  100

seq1  CTTGCTGTTCTCACTGATGGTGCCTCCTGCAATGCTTTACAACATCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTTCTCACTGATGGTGCCTCCTGCAATGCTTTACAACATCACTG  150

seq1  CACCAAATGGCTGTGCTTTTAATCCACTCATTATAGCTCTGAGCTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATGGCTGTGCTTTTAATCCACTCATTATAGCTCTGAGCTCTTTA  200

seq1  AGTCCTGTAGACACAGAGCTTATAACTAGAAACACAACAGAAAAATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTAGACACAGAGCTTATAACTAGAAACACAACAGAAAAATATTA  250

seq1  GCGTGTTAAGTGGGAATTCTGTTATGTCTATGTTCTCTGTGTAATTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTTAAGTGGGAATTCTGTTATGTCTATGTTCTCTGTGTAATTATGT  300

seq1  CTAATTTGGTCAGCATGTGGACAAAACCCTTGCTTCTATACAGGAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTGGTCAGCATGTGGACAAAACCCTTGCTTCTATACAGGAGTACT  350

seq1  TTAAAAGCAGATATTTTTGAATTGTATCTTGAGTTTTGTTTTATCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCAGATATTTTTGAATTGTATCTTGAGTTTTGTTTTATCAACAC  400

seq1  CAATGGTGTGTATTTACATAAGCATTCACTTTTCTGACTTGAACTGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGTGTATTTACATAAGCATTCACTTTTCTGACTTGAACTGTTAG  450

seq1  CAAGCTACAAGGAATTTTAAATCAAACCAGAAAAATTCTAATTTTTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTACAAGGAATTTTAAATCAAACCAGAAAAATTCTAATTTTTCTCA  500

seq1  TCAGTGAGAAAAAACTAATGAAGTAGATTATATAGATTGGCCAAGATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGAAAAAACTAATGAAGTAGATTATATAGATTGGCCAAGATAGA  550

seq1  CTGCAATTATTCTAAGTCAATTATTCATTTAGCATTTCTTTTTATATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATTATTCTAAGTCAATTATTCATTTAGCATTTCTTTTTATATATC  600

seq1  TCAAATAGGGTATATTTATTATTCATCATAAATGACCTAGTTCCTATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGGGTATATTTATTATTCATCATAAATGACCTAGTTCCTATTTG  650

seq1  TACAATTGAATTACAGACCAATTCTTCTGTCAATTTTAAACAAATACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGAATTACAGACCAATTCTTCTGTCAATTTTAAACAAATACAAT  700

seq1  ATATTTTTATTCTATCTTGCATTTCAATATGAGATAATATTCTCTAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTATTCTATCTTGCATTTCAATATGAGATAATATTCTCTAACAC  750

seq1  TTAAAATGTTCTTGTGATGAATAAGGAGCTTTATCCCCTTTAAAATCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGTTCTTGTGATGAATAAGGAGCTTTATCCCCTTTAAAATCCCC  800

seq1  CAAAACTAATAGATAATTAATTTAGGATGCTCAGTATTCATTCATCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAATAGATAATTAATTTAGGATGCTCAGTATTCATTCATCCAGT  850

seq1  ATTTTAAGAACTAAGACTTGAATAATAATATAAGTACTTGATCATTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGAACTAAGACTTGAATAATAATATAAGTACTTGATCATTTTTG  900

seq1  TAGTAATGATAGAGTTAGAGTTTATAGGTTATGGGACAAACATATGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATGATAGAGTTAGAGTTTATAGGTTATGGGACAAACATATGAAAA  950

seq1  ATAAGGACCAGTTGCTTTAAGCAGCCAGAGAAATCACAAACCAAACTAAC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATAAGGACCAGTTGCTTTAAGCAGCCAGAGAAATCACAAACC-AACTAAC  999

seq1  TGAAGTCAGCACTTTGAAAGAAG-AGGTGGAAGGATCAGGAATTTGAGTC  1049
      ||||||||||||||||||||||| |||||| | ||||||  |||||||||
seq2  TGAAGTCAGCACTTTGAAAGAAGAAGGTGG-ATGATCAG--ATTTGAGTC  1046

seq1  TAATTTCATCTGCATAGTGAGTTTGGATGCTTTAGCTACCTATATTATAC  1099
      | |||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  T-ATTTCATCTGCATAGTGAGTTTGGATGC-TTAGCTACCTATATTATA-  1093

seq1  CGTCTCAAATACAGCAGCTCCCAAGAAAACAAGGAGATATTATCT  1144
      ||||||||||||||||||| ||||| |||||| |||||| |||||
seq2  CGTCTCAAATACAGCAGCT-CCAAG-AAACAA-GAGATA-TATCT  1134


seq1: chr6_41534563_41534746
seq2: B6Ng01-226G12.g_417_603

seq1  ATTTATTTATCATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACC  50
      ||||||||||  ||||||||||||||| ||||||| ||||||||||||||
seq2  ATTTATTTATGCTTATATGTAAGTACATTGTAGCTATCTTCAGACACACC  50

seq1  AGAAAAGGGAGTCAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGG  100
      |||| | |||||||||||||||||||| ||||||||||||||||||||| 
seq2  AGAAGAAGGAGTCAGATCTCATTATGGGTGGTTGTGAGCCACCATGTGGT  100

seq1  TGCTGGGATTTGAATTCAGGACCTTCAGAAGAGCAGTCAGTGCCCTTAAC  150
      |||||||||||||| |||||||||||| |||| |||||| ||| || |||
seq2  TGCTGGGATTTGAACTCAGGACCTTCACAAGAACAGTCAATGCTCTAAAC  150

seq1  CGCTGAACCATCTCTCCAGCCCC--AGC-TACATTCT  184
      ||||||  |||||||||||||||  | | ||||||||
seq2  CGCTGAGTCATCTCTCCAGCCCCCTATCATACATTCT  187


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