BAC Information

Click to search

BAC

Clone NameB6Ng01-227C06
Chromosome6 (Build37)
Map Location 16,633,018 - 16,634,138
singlet/doubletsinglet
Overlap genenone
Upstream geneMdfic, LOC100041116
Downstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227C06.bB6Ng01-227C06.g
ACCGA040888GA040889
length1,115499
definitionB6Ng01-227C06.b B6Ng01-227C06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtttcatgatgattttatatttgggtgaacatgtcagcgaaga
tctttggttactgcttggccaccaggcatgaaacatggcggaatgctgtc
tagtttagctctcacagtgtaaaaggaatctgcatctagtactttattag
tggtgattttccttgaaatgacccccaaaagcagagtgctgaaatactgt
cttgcattcttaaatcccaagagtctaggatacacctcacagagaaatta
aattggttggataaacttcatccaattatgattttattgttctgttagct
acatgccaatacgatatctatagtaaacagaatcttttaaaacataaata
gctaaagctgcggtccttgggtaggtgatgtttcagtcacgggttcccag
atcaaaagagtctttagaaaatacaaccctttgtattatagtttaacttc
aaaatttctggtcagatgctggaaccatttctcagtagataaagtgcttg
ttattcaagtgtgaggatcagagttcagatccccaactcacataaagctg
ggtagagtagcatgtctctggtatcctagtgcttctataggaagaataga
gatggatacagaacacttccctgatgctcatgggctggaaggcctggcat
gaccagcagtaaacaataaagcaccctgcctcaaacaaggtagaaggcag
gaattgacaaatgaggttgtcatctcgccatcataggcacattactgtac
acatacagtctcacatgcatggacaaacacacatatagtacacaccacca
tatgaaaaaaaaacactctggttagaatattcgaattctttcataagctt
caaattgttttccatagctcagaaaacattgccttatgtgagttgtttct
ctgtgagttaatatgaagaaaaataccttatcaaaagcaaatggcatttt
tgctttttctttgagaattatgtaactttctttgttcgttttttattttt
gcttgcaagatacttaaagctgcctcagtgtcattacagtgatgtattta
tcatattattagagtcatttgctgctttatgtagtgaattttaatttcct
tttcatctagcatat

gaattctcacctgaggaataccgaatggccgagaagcacctgaaaaaata
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaagcctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtgggtaaagagaaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacaccccataatcagcctccaaacactgacaccattgcata
cactagcaagatgttgctgaaaggaccctgatatagctttctcttgtgag
actatgccagggcctagcaaacacataagtggatgctcacagtcagctat
tgggtggttcacagggcccccaatggaggagctagagaaagtacccaagg
agctaaagggatctgcaaccctataggtggaacaatattatgaactaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_16633018_16634138
seq2: B6Ng01-227C06.b_48_1162 (reverse)

seq1  ATATGCTAGATGAAAAAGAAAATAAAAATTCACTACATAAAGCAGGAAAA  50
      |||||||||||| ||||| |||| |||||||||||||||||||| | |||
seq2  ATATGCTAGATG-AAAAGGAAATTAAAATTCACTACATAAAGCA-GCAAA  48

seq1  TGAACTCTAATATTAATGATAAATACCATCACTGTAATTGACCACTGAGG  100
      || ||||||||| | |||||||||| ||||||||||| ||| ||||||||
seq2  TG-ACTCTAATAAT-ATGATAAATA-CATCACTGTAA-TGA-CACTGAGG  93

seq1  CAGCTTTAAGTATCCTTGCAAGC-AAAATAAAAAACGAACAAAGAAAGTT  149
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  CAGCTTTAAGTAT-CTTGCAAGCAAAAATAAAAAACGAACAAAGAAAGTT  142

seq1  ACATAATTCTCAAAG-AAAAGCAAAAATGCCATTTGCTTTTGATAAGGTA  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACATAATTCTCAAAGAAAAAGCAAAAATGCCATTTGCTTTTGATAAGGTA  192

seq1  TTTTTCTTCATATTAACTCACAGAGAAACAACTCACATAAGGCAATGTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCATATTAACTCACAGAGAAACAACTCACATAAGGCAATGTTT  242

seq1  TCTGAGCTATGGAAAACAATTTGAAGCTTATGAAAGAATTCGAATATTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTATGGAAAACAATTTGAAGCTTATGAAAGAATTCGAATATTCT  292

seq1  AACCAGAGTGTTTTTTTTTCATATGGTGGTGTGTACTATATGTGTGTTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGTGTTTTTTTTTCATATGGTGGTGTGTACTATATGTGTGTTTG  342

seq1  TCCATGCATGTGAGACTGTATGTGTACAGTAATGTGCCTATGATGGCGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCATGTGAGACTGTATGTGTACAGTAATGTGCCTATGATGGCGAG  392

seq1  ATGACAACCTCATTTGTCAATTCCTGCCTTCTACCTTGTTTGAGGCAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAACCTCATTTGTCAATTCCTGCCTTCTACCTTGTTTGAGGCAGGG  442

seq1  TGCTTTATTGTTTACTGCTGGTCATGCCAGGCCTTCCAGCCCATGAGCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATTGTTTACTGCTGGTCATGCCAGGCCTTCCAGCCCATGAGCAT  492

seq1  CAGGGAAGTGTTCTGTATCCATCTCTATTCTTCCTATAGAAGCACTAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGTGTTCTGTATCCATCTCTATTCTTCCTATAGAAGCACTAGGA  542

seq1  TACCAGAGACATGCTACTCTACCCAGCTTTATGTGAGTTGGGGATCTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGACATGCTACTCTACCCAGCTTTATGTGAGTTGGGGATCTGAA  592

seq1  CTCTGATCCTCACACTTGAATAACAAGCACTTTATCTACTGAGAAATGGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCCTCACACTTGAATAACAAGCACTTTATCTACTGAGAAATGGT  642

seq1  TCCAGCATCTGACCAGAAATTTTGAAGTTAAACTATAATACAAAGGGTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCATCTGACCAGAAATTTTGAAGTTAAACTATAATACAAAGGGTTG  692

seq1  TATTTTCTAAAGACTCTTTTGATCTGGGAACCCGTGACTGAAACATCACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTAAAGACTCTTTTGATCTGGGAACCCGTGACTGAAACATCACC  742

seq1  TACCCAAGGACCGCAGCTTTAGCTATTTATGTTTTAAAAGATTCTGTTTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGGACCGCAGCTTTAGCTATTTATGTTTTAAAAGATTCTGTTTA  792

seq1  CTATAGATATCGTATTGGCATGTAGCTAACAGAACAATAAAATCATAATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGATATCGTATTGGCATGTAGCTAACAGAACAATAAAATCATAATT  842

seq1  GGATGAAGTTTATCCAACCAATTTAATTTCTCTGTGAGGTGTATCCTAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGTTTATCCAACCAATTTAATTTCTCTGTGAGGTGTATCCTAGA  892

seq1  CTCTTGGGATTTAAGAATGCAAGACAGTATTTCAGCACTCTGCTTTTGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGATTTAAGAATGCAAGACAGTATTTCAGCACTCTGCTTTTGGG  942

seq1  GGTCATTTCAAGGAAAATCACCACTAATAAAGTACTAGATGCAGATTCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTCAAGGAAAATCACCACTAATAAAGTACTAGATGCAGATTCCT  992

seq1  TTTACACTGTGAGAGCTAAACTAGACAGCATTCCGCCATGTTTCATGCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTGTGAGAGCTAAACTAGACAGCATTCCGCCATGTTTCATGCCT  1042

seq1  GGTGGCCAAGCAGTAACCAAAGATCTTCGCTGACATGTTCACCCAAATAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCAAGCAGTAACCAAAGATCTTCGCTGACATGTTCACCCAAATAT  1092

seq1  AAAATCATCATGAAACTGAATTC  1121
      |||||||||||||||||||||||
seq2  AAAATCATCATGAAACTGAATTC  1115


| Home | SequenceCutter | Blast | Download |