BAC Information

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BAC

Clone NameB6Ng01-227D12
Chromosome6 (Build37)
Map Location 94,536,825 - 94,647,945
singlet/doubletdoublet
Overlap geneSlc25a26, Lrig1
Upstream geneLOC665831, Magi1, LOC100043262, LOC665856
Downstream geneLOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912, Suclg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227D12.bB6Ng01-227D12.g
ACCGA040946GA040947
length1,1481,150
definitionB6Ng01-227D12.b B6Ng01-227D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,536,825 - 94,537,969)(94,646,801 - 94,647,945)
sequence
gaattcactatgtagcccaggctggcctcaaactcctagtaatctttctt
ctaaatgttgggattataggcataagccacctctcttggatatttcagta
tcattgcagtggcaactgtggttcctgttgtatttattctgttgcatata
ctgctctgctttgaaggtggtgcaaatcccggtgttgtattggggacaca
ccacgtggtcccattcacatcactgctaggcttgctagtgatttaagatc
ttggagcttcaggttttctgtctaaagaatgactgaactctaactgttgc
acattcttcaggtgactgtggtgagcgtcctattgagtgatgtgtttagt
ggctagaggagtcagttgtgcttgttgctgtcagtcattattaacactga
attttccactgacattggcctctgactttgttttagtttctctagggact
taaggactgtttttcctaagatttttattagttttcactttattacaaaa
tgatttctttatatcttcttaggctaattttgcctaggtgaagtgaaaag
ttaggcttgtctatagggattctacatttaaacagtcttcaaacattgga
atctattttgatcatttctttccctttttctttgtagaacacaccgacac
ctctgtaaagctgcttcacccatctctctttttcaaaaccctcttcctcc
tatgcatgcaatatatttataatatatagtatatcacacacacacctctc
atggagtgtcctggaagttctgttgttcccttgagcttgcagcacacacc
tggaggacagttctgcacatttgttgtattatgaattacatagcaccttt
gacttctgtgatgtctttcatcccgtgtttgttctttactgttgctataa
atcaagcccgcgagcagcagcttgagtgttcggaatcatctcttcttgag
aaaatgtcagaagattaataattgaggatgacctcttctcactaagaaaa
tgtggttcatgtctgcatttttttcttcagtcagtattttagtgaagtga
tggtgttaagctgccctgctgttaggctgagtataagcctccagtgctag
aaccatgtacttagcatgagcaaggcagactctactgggcacacacat

gaattcactactgaaaatgcctggtcttagagtggggctgaacagtggct
ctgtcagttactgggaggtagacacactattgctctctgctaagattttt
atctattaataactgaggcagtttggggacattttggggttttttttgca
tacttaagatggaatattattattattattaaataatagaactatgtggg
tagagtcagagaatgttctcaagtgttcacttgttggaagacttgcaaag
ccatgtgtcaggggtgttctgaggaaggctctccgttcccaagccacact
tcctggagaggacagagtgctcttatttgtactttctttttgtcacaaga
cctaccttggcttgcccttccttggagcagaacttgctggtcatttttag
gctttcagttgcctacaagtgacaattcacacagcataaatacctttaaa
attgtagtctctcttactcacacaatttagtgatcagtaaataccagact
gagtgttctgggcttcaggagataggcctctactgaagatggttttaatg
gattagttttaatattcaagcagtttggtttctgggttagtatgtggcat
gtgcgcgcacgcacgcacgcgcacacacacacacacacacacacacacac
acacacacacacgggcctttgaagaatactcacgagtttattttatttct
gcttaaagtgaaatcaagtgtgaattgtctcctaaccttcatgtttctca
acatatttccccccactggtattgagggttgcacccaagggctgcagcac
gcgaggctgggcaaagctcagctacttctgaaccgtatctccaataccag
cactttccttttaaaccattgcttttactttttggcaggatagcagtgga
gaaaagtctccgtatgtaatacaataaagtatcttgtattttcactgcat
ttacaccttttaaggtcattgtgtctagaaaatgcttttgagctagtttt
atagcctatgaagtagattactgcagctgctcaacagtttcagctggtgg
gtttggcgaatagcaggagacctatgccttttattggacttcccttcccc
ttgtaaacagtacatcctaccgtttggagttgtcctcgtagccagtgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_94536825_94537969
seq2: B6Ng01-227D12.b_44_1191

seq1  GAATTCACTATGTAGCCCAGGCTGGCCTCAAACTCCTAGTAATCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGCCCAGGCTGGCCTCAAACTCCTAGTAATCTTTCTT  50

seq1  CTAAATGTTGGGATTATAGGCATAAGCCACCTCTCTTGGATATTTCAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTTGGGATTATAGGCATAAGCCACCTCTCTTGGATATTTCAGTA  100

seq1  TCATTGCAGTGGCAACTGTGGTTCCTGTTGTATTTATTCTGTTGCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAGTGGCAACTGTGGTTCCTGTTGTATTTATTCTGTTGCATATA  150

seq1  CTGCTCTGCTTTGAAGGTGGTGCAAATCCCGGTGTTGTATTGGGGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGCTTTGAAGGTGGTGCAAATCCCGGTGTTGTATTGGGGACACA  200

seq1  CCACGTGGTCCCATTCACATCACTGCTAGGCTTGCTAGTGATTTAAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGTCCCATTCACATCACTGCTAGGCTTGCTAGTGATTTAAGATC  250

seq1  TTGGAGCTTCAGGTTTTCTGTCTAAAGAATGACTGAACTCTAACTGTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCTTCAGGTTTTCTGTCTAAAGAATGACTGAACTCTAACTGTTGC  300

seq1  ACATTCTTCAGGTGACTGTGGTGAGCGTCCTATTGAGTGATGTGTTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTTCAGGTGACTGTGGTGAGCGTCCTATTGAGTGATGTGTTTAGT  350

seq1  GGCTAGAGGAGTCAGTTGTGCTTGTTGCTGTCAGTCATTATTAACACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGAGGAGTCAGTTGTGCTTGTTGCTGTCAGTCATTATTAACACTGA  400

seq1  ATTTTCCACTGACATTGGCCTCTGACTTTGTTTTAGTTTCTCTAGGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCACTGACATTGGCCTCTGACTTTGTTTTAGTTTCTCTAGGGACT  450

seq1  TAAGGACTGTTTTTCCTAAGATTTTTATTAGTTTTCACTTTATTACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACTGTTTTTCCTAAGATTTTTATTAGTTTTCACTTTATTACAAAA  500

seq1  TGATTTCTTTATATCTTCTTAGGCTAATTTTGCCTAGGTGAAGTGAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTTTATATCTTCTTAGGCTAATTTTGCCTAGGTGAAGTGAAAAG  550

seq1  TTAGGCTTGTCTATAGGGATTCTACATTTAAACAGTCTTCAAACATTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTGTCTATAGGGATTCTACATTTAAACAGTCTTCAAACATTGGA  600

seq1  ATCTATTTTGATCATTTCTTTCCCTTTTTCTTTGTAGAACACACCGACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTGATCATTTCTTTCCCTTTTTCTTTGTAGAACACACCGACAC  650

seq1  CTCTGTAAAGCTGCTTCACCCATCTCTCTTTTTCAAAACCCTCTTCCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAAAGCTGCTTCACCCATCTCTCTTTTTCAAAACCCTCTTCCTCC  700

seq1  TATGCATGCAATATATTTATAATATATAGTATATCACACACACACCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATGCAATATATTTATAATATATAGTATATCACACACACACCTCTC  750

seq1  ATGGAGTGTCCTGGAAGTTCTGTTGTTCCCTTGAGCTTGCAGCACACACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTGTCCTGGAAGTTCTGTTGTTCCCTTGAGCTTGCAGCACACACC  800

seq1  TGGAGGACAGTTCTGCACATTTGTTGTATTATGAATTACATAGCACCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACAGTTCTGCACATTTGTTGTATTATGAATTACATAGCACCTTT  850

seq1  GACTTCTGTGATGTCTTTCATCCCGTGTTTGTTCTTTACTGTTGCTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGTGATGTCTTTCATCCCGTGTTTGTTCTTTACTGTTGCTATAA  900

seq1  ATCAAGCCCGCGAGCAGCAGCTTGAGTGTTCGGAATCATCTCTTCTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCCCGCGAGCAGCAGCTTGAGTGTTCGGAATCATCTCTTCTTGAG  950

seq1  AAAATGTCAGAAGATTAATAATTGAGGATGACCTCTTCTCACTAAGAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCAGAAGATTAATAATTGAGGATGACCTCTTCTCACTAAGAAAA  1000

seq1  TGTGGTTCATGTCTGCA-TTTCTTCTCCAGTCAGTATTTTAGTG-AGTGA  1048
      ||||||||||||||||| ||| |||| ||||||||||||||||| |||||
seq2  TGTGGTTCATGTCTGCATTTTTTTCTTCAGTCAGTATTTTAGTGAAGTGA  1050

seq1  TGGTGTTAAAGCTGGCCTGCTGTTAAGGGCTGGAGGTAT-AGC--TCAGT  1095
      ||||||| |||||| ||||||||||  |||||   |||| |||   ||||
seq2  TGGTGTT-AAGCTGCCCTGCTGTTA--GGCTG--AGTATAAGCCTCCAGT  1095

seq1  GCTAGAA-CATGTACCTAGCATGAGCAAGGCAGACTC-AC-GGGCACACA  1142
      ||||||| ||||||| ||||||||||||||||||||| || |||||||||
seq2  GCTAGAACCATGTACTTAGCATGAGCAAGGCAGACTCTACTGGGCACACA  1145

seq1  CAT  1145
      |||
seq2  CAT  1148


seq1: chr6_94646801_94647945
seq2: B6Ng01-227D12.g_67_1216 (reverse)

seq1  CTACACTTGGCCTACGAG--CAACTCCAAA-GGTA-GATGTACTGTTTAC  46
      |||||||  | |||||||  |||||||||| |||| ||||||||||||||
seq2  CTACACT--GGCTACGAGGACAACTCCAAACGGTAGGATGTACTGTTTAC  48

seq1  AAAAGGGGGAGG--AGTCCCAT-AAAGCCATAGGTCTCCTGCTA-TCG-C  91
        |||||| |||  ||||| || |||| |||||||||||||||| ||| |
seq2  --AAGGGGAAGGGAAGTCCAATAAAAGGCATAGGTCTCCTGCTATTCGCC  96

seq1  AAACCCACAGCCTGAAACTGTTTGAGCAGGCTGCAGTAAATCTACTTCAT  141
      ||||||||   ||||||||| ||||||| |||||||| ||||||||||||
seq2  AAACCCACCAGCTGAAACTG-TTGAGCA-GCTGCAGT-AATCTACTTCAT  143

seq1  AGGCTTATAAACTAGCTC-AAAGCATTTTCTAGACACAATGACCTTAAAA  190
      |||||   |||||||||| |||||||||||||||||||||||||||||||
seq2  AGGCTATAAAACTAGCTCAAAAGCATTTTCTAGACACAATGACCTTAAAA  193

seq1  GGTGTAAATGCAGTGAAAATACAAGATACTTTATTGTATTACATACGGAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAAATGCAGTGAAAATACAAGATACTTTATTGTATTACATACGGAG  243

seq1  AC-TTTCTCCACTGCTATCCTGCCAAAAAGTAAAAGCAATGGTTTAAAAG  289
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCCACTGCTATCCTGCCAAAAAGTAAAAGCAATGGTTTAAAAG  293

seq1  GAAAGTGCTGGTATTGGAGATACGGTTCAGAAGTAGCTGAGC-TTGCCCA  338
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAAGTGCTGGTATTGGAGATACGGTTCAGAAGTAGCTGAGCTTTGCCCA  343

seq1  GCCTCGCGTGCTGCAGCCCTTGGGTGCAACCCTCAATACCAGTGGGGGGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGCGTGCTGCAGCCCTTGGGTGCAACCCTCAATACCAGTGGGGGGA  393

seq1  AATATGTTGAGAAACATGAAGGTTAGGAGACAATTCACACTTGATTTCAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTGAGAAACATGAAGGTTAGGAGACAATTCACACTTGATTTCAC  443

seq1  TTTAAGCAGAAATAAAATAAACTCGTGAGTATTCTTCAAAGGCCCGTGTG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAGAAATAAAATAAACTCGTGAGTATTCTTCAAAGGCCCGTGTG  493

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGTGCGTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGTGCGTG  543

seq1  CGCGCACATGCCACATACTAACCCAGAAACCAAACTGCTTGAATATTAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACATGCCACATACTAACCCAGAAACCAAACTGCTTGAATATTAAA  593

seq1  ACTAATCCATTAAAACCATCTTCAGTAGAGGCCTATCTCCTGAAGCCCAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCCATTAAAACCATCTTCAGTAGAGGCCTATCTCCTGAAGCCCAG  643

seq1  AACACTCAGTCTGGTATTTACTGATCACTAAATTGTGTGAGTAAGAGAGA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCAGTCTGGTATTTACTGATCACTAAATTGTGTGAGTAAGAGAGA  693

seq1  CTACAATTTTAAAGGTATTTATGCTGTGTGAATTGTCACTTGTAGGCAAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATTTTAAAGGTATTTATGCTGTGTGAATTGTCACTTGTAGGCAAC  743

seq1  TGAAAGCCTAAAAATGACCAGCAAGTTCTGCTCCAAGGAAGGGCAAGCCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCTAAAAATGACCAGCAAGTTCTGCTCCAAGGAAGGGCAAGCCA  793

seq1  AGGTAGGTCTTGTGACAAAAAGAAAGTACAAATAAGAGCACTCTGTCCTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGTCTTGTGACAAAAAGAAAGTACAAATAAGAGCACTCTGTCCTC  843

seq1  TCCAGGAAGTGTGGCTTGGGAACGGAGAGCCTTCCTCAGAACACCCCTGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAAGTGTGGCTTGGGAACGGAGAGCCTTCCTCAGAACACCCCTGA  893

seq1  CACATGGCTTTGCAAGTCTTCCAACAAGTGAACACTTGAGAACATTCTCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGCTTTGCAAGTCTTCCAACAAGTGAACACTTGAGAACATTCTCT  943

seq1  GACTCTACCCACATAGTTCTATTATTTAATAATAATAATAATATTCCATC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTACCCACATAGTTCTATTATTTAATAATAATAATAATATTCCATC  993

seq1  TTAAGTATGCAAAAAAAACCCCAAAATGTCCCCAAACTGCCTCAGTTATT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATGCAAAAAAAACCCCAAAATGTCCCCAAACTGCCTCAGTTATT  1043

seq1  AATAGATAAAAATCTTAGCAGAGAGCAATAGTGTGTCTACCTCCCAGTAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAAAAATCTTAGCAGAGAGCAATAGTGTGTCTACCTCCCAGTAA  1093

seq1  CTGACAGAGCCACTGTTCAGCCCCACTCTAAGACCAGGCATTTTCAGTAG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGAGCCACTGTTCAGCCCCACTCTAAGACCAGGCATTTTCAGTAG  1143

seq1  TGAATTC  1145
      |||||||
seq2  TGAATTC  1150


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