BAC Information

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BAC

Clone NameB6Ng01-227K16
Chromosome6 (Build37)
Map Location 143,071,891 - 143,218,362
singlet/doubletdoublet
Overlap geneEtnk1, D6Ertd474e
Upstream geneSlco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik
Downstream geneSox5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K16.bB6Ng01-227K16.g
ACCGA041279GA041280
length1,1241,148
definitionB6Ng01-227K16.b B6Ng01-227K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,071,891 - 143,073,018)(143,217,215 - 143,218,362)
sequence
ggaattctttgtttagctctgagtcccattttttagtggggttatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgatttaggattggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgatggtgtcttttgccttacagaagttttgcaatttt
atgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgt
tctattcaggaatttttcccctgtgcccatatcttcgaggcttttctcca
ctttctcctctataagtttcagtgtctctggtttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaatttgc
attcttctacatgataacctccagttgtgcctagtctgactctcttaaag
tatgtatagatcatcagtttctgctggcttctgccacccacaacatacga
gtccagattctggagccgactctagaattctccagctgcagcctccctct
acctgctttctaaccatttgtctctgcaatatgggctctggcctgctatg
cccttgctgtggacacctatgcgtctctctggcttctgcagccttctaca
cccacgtggacatctcccttttctcctgctacatgctctgtctctctttg
aggcttcctgggccagtgcattgcaagtttccttgcctcccccaggtgtt
gcctgttaggtctggcagctcccgctccctcagcttcccttgtacagctc
atagaaatcccctccagaggaattttgtcttgtggtcctctctgttcctc
catggactgagattttattacaggagcctggcctcgatacagatcaatga
tcaacaaattggggcacttgatttccatattctcacaagtcataacccgc
tgctgttgcacaaaagaatcacaaggtatcttatgtctaaactttttttg
gttggttgttgtttttgttttttggaatcaggtttctctgatagccctgc
cgtcctggaactcacttgtgtagaccaggctggcctggacttcagaatct
gccgctctgcctcctaagtgctgg
gaattcatgagatctaaatgtctgtgtgatcgattgaaccaagataggtt
tgaagagctcaaaaaaatatcaaacttaattgtttctggggcctgggagg
gcactgctgctcttgcagaggaccagagttcaatttccacaacctagtca
agaagattgctactgcctctaactccagccccagagagataaaatgacct
cttctggcttctgagggtactgtacacaggtgagcatacacagacacata
gatacacaaatttccaaaataaaaagaaataaataagtagaaagcaatga
ggacaaacctggcatcaaatgcacactgccgtacgcatgcgcgcacggcc
gtggttcctccacacatacgcatgcgcgaatggccctggtccctacacgc
atgcatacatacacacacacacacacacacacacacacacacagaggcat
gcacacacatggccttggtacctgcacatgaatgtatgtgtctgtgcctg
caaattaataaaaatataaatgtttctggctaggtatatatcaacatact
tcttcgggagttctgagtagagagaggatagaaggacagacagaaagaag
gaagaacaacttttaacaacagtgccaaagacaacatttcaaaatgaatg
aaaaatcggtgagaaaaggtaagaattctatctcagtgagcattgagagt
ggcattgatctttcttgtttatctagattgggaagtcggttctgtcacaa
cactttttcagcagcccccctgcccctgccaacaccatgccccacagagg
gaggacctgggacccaggatctctcagctcagccctttgacctgttccca
cttctcattggctaaaccatgagctaccaccactcgatgggtgattaata
aggaaaactgaaagaagtaaatgaatttcacaaatcaatgcaatgtggtt
ttcagaaaatgcataatttataacaaaaaaaaaatcatttagtaaaactt
cattccttgtactattatttacaggaatacctcagaactacactgggaaa
taatgggataatcgccctaaggcaaggaggctgtgacttccaactgccta
tgtaactagcctatttatccaagcgacctgctgtaattgaactttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_143071891_143073018
seq2: B6Ng01-227K16.b_46_1168

seq1  GAATTCTTTGTTTAGCTCTGAGTCCCATTTTTTAGTGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGTCCCATTTTTTAGTGGGGTTATTTGATT  50

seq1  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGTTTTGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGATGGTGTCTTTTGCCTTACAGAAGTTTTGCAATTTTA  200

seq1  TGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTTCTCCAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTATGTGAAGTTCCTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTATGTGAAGTTCCTTGAT  350

seq1  CCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTTGCA  400

seq1  TTCTTCTACATGATAACCTCCAGTTGTGCCTAGTCTGACTCTCTTAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATGATAACCTCCAGTTGTGCCTAGTCTGACTCTCTTAAAGT  450

seq1  ATGTATAGATCATCAGTTTCTGCTGGCTTCTGCCACCCACAACATACGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAGATCATCAGTTTCTGCTGGCTTCTGCCACCCACAACATACGAG  500

seq1  TCCAGATTCTGGAGCCGACTCTAGAATTCTCCAGCTGCAGCCTCCCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTCTGGAGCCGACTCTAGAATTCTCCAGCTGCAGCCTCCCTCTA  550

seq1  CCTGCTTTCTAACCATTTGTCTCTGCAATATGGGCTCTGGCCTGCTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTCTAACCATTTGTCTCTGCAATATGGGCTCTGGCCTGCTATGC  600

seq1  CCTTGCTGTGGACACCTATGCGTCTCTCTGGCTTCTGCAGCCTTCTACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGTGGACACCTATGCGTCTCTCTGGCTTCTGCAGCCTTCTACAC  650

seq1  CCACGTGGACATCTCCCTTTTCTCCTGCTACATGCTCTGTCTCTCTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTGGACATCTCCCTTTTCTCCTGCTACATGCTCTGTCTCTCTTTGA  700

seq1  GGCTTCCTGGGCCAGTGCATTGCAAGTTTCCTTGCCTCCCCCAGGTGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCTGGGCCAGTGCATTGCAAGTTTCCTTGCCTCCCCCAGGTGTTG  750

seq1  CCTGTTAGGTCTGGCAGCTCCCGCTCCCTCAGCTTCCCTTGTACAGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTAGGTCTGGCAGCTCCCGCTCCCTCAGCTTCCCTTGTACAGCTCA  800

seq1  TAGAAATCCCCTCCAGAGGAATTTTGTCTTGTGGTCCTCTCTGTTCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCCCCTCCAGAGGAATTTTGTCTTGTGGTCCTCTCTGTTCCTCC  850

seq1  ATGGACTGAGATTTTATTACAGGAGCCTGGCCTCGATACAGATCAATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGAGATTTTATTACAGGAGCCTGGCCTCGATACAGATCAATGAT  900

seq1  CAACAAATTGGGGCACTTGATTTCCATATTCTCACAAGTCATAA-CCGCT  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAACAAATTGGGGCACTTGATTTCCATATTCTCACAAGTCATAACCCGCT  950

seq1  GCTGTTGCACAAAAGAATCACAA-GTATCTTATGTCTAAACTTTTTTTGT  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  GCTGTTGCACAAAAGAATCACAAGGTATCTTATGTCTAAACTTTTTTTGG  1000

seq1  TTGTTTGTTTGTTTTTTGTTTTTTTGAATCAGGGTTTCTCTGAATAGCCC  1048
      ||| |||||   |||||||||||| |||||| |||||||||| |||||||
seq2  TTGGTTGTT--GTTTTTGTTTTTTGGAATCA-GGTTTCTCTG-ATAGCCC  1046

seq1  TGGCTGTCCTGGAACTCACTT-TGTAGACCAGGCTGGCCTTGAACTCAGA  1097
      | || |||||||||||||||| |||||||||||||||||| ||  |||| 
seq2  T-GCCGTCCTGGAACTCACTTGTGTAGACCAGGCTGGCCTGGACTTCAG-  1094

seq1  AATCTGCCTGCCTCTGCCTCCCAAGTGCTGG  1128
      ||||||||   |||||||||| |||||||||
seq2  AATCTGCC--GCTCTGCCTCCTAAGTGCTGG  1123

seq1: chr6_143217215_143218362
seq2: B6Ng01-227K16.g_69_1216 (reverse)

seq1  AATAAA-ATCAATTACAGCAGGTTTGCTGTGATAATTAGCTTGGTTTACA  49
      ||||||  |||||||||||||| | |||  ||||| |||  | | |||| 
seq2  AATAAAGTTCAATTACAGCAGG-TCGCTTGGATAAATAGGCTAG-TTAC-  47

seq1  ATAGGGCGTTTGGAAGCTCACAGGCCTTCCTTGCTTTAGGGCGA-TAT-C  97
      ||| |||  ||||||| ||||||  | ||||||| ||||||||| ||| |
seq2  ATA-GGCAGTTGGAAG-TCACAG--CCTCCTTGCCTTAGGGCGATTATCC  93

seq1  CATTATTT-CCAGTGGTAGTTCTTGAGGTATT-CTGTAAAT-ATAGTACA  144
      |||||||| ||||| ||||||| ||||||||| |||||||| ||||||||
seq2  CATTATTTCCCAGT-GTAGTTC-TGAGGTATTCCTGTAAATAATAGTACA  141

seq1  AGGAATG-AGTTTTACTAATTGA-TTTTTTTTTGTTATAAATTATGCA-T  191
      ||||||| ||||||||||| ||| |||||||||||||||||||||||| |
seq2  AGGAATGAAGTTTTACTAAATGATTTTTTTTTTGTTATAAATTATGCATT  191

seq1  TTCTGGAAACCACATTGCATTTGATTTGTGAAATTCA-TTACTTCTTTCA  240
      ||||| ||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TTCTGAAAACCACATTGCA-TTGATTTGTGAAATTCATTTACTTCTTTCA  240

seq1  GTTTTCCTTATTAATCACCCATCGAGTGGTGGTAGCTCATGGTTTAGCCA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTTATTAATCACCCATCGAGTGGTGGTAGCTCATGGTTTAGCCA  290

seq1  ATGAGAAGTGGGAACAGGTCAAAGGGCTGAGCTGAGAGATCCTGGGTCCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGTGGGAACAGGTCAAAGGGCTGAGCTGAGAGATCCTGGGTCCC  340

seq1  AGGTCCTCCCTCTGTGGGGCATGGTGTTGGCAGGGGCAGGGGGGCTGCTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCCCTCTGTGGGGCATGGTGTTGGCAGGGGCAGGGGGGCTGCTG  390

seq1  AAAAAGTGTTGTGACAGAACCGACTTCCCAATCTAGATAAACAAGAAAGA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTTGTGACAGAACCGACTTCCCAATCTAGATAAACAAGAAAGA  440

seq1  TCAATGCCACTCTCAATGCTCACTGAGATAGAATTCTTACCTTTTCTCAC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCCACTCTCAATGCTCACTGAGATAGAATTCTTACCTTTTCTCAC  490

seq1  CGATTTTTCATTCATTTTGAAATGTTGTCTTTGGCACTGTTGTTAAAAGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTTCATTCATTTTGAAATGTTGTCTTTGGCACTGTTGTTAAAAGT  540

seq1  TGTTCTTCCTTCTTTCTGTCTGTCCTTCTATCCTCTCTCTACTCAGAACT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTCCTTCTTTCTGTCTGTCCTTCTATCCTCTCTCTACTCAGAACT  590

seq1  CCCGAAGAAGTATGTTGATATATACCTAGCCAGAAACATTTATATTTTTA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAAGAAGTATGTTGATATATACCTAGCCAGAAACATTTATATTTTTA  640

seq1  TTAATTTGCAGGCACAGACACATACATTCATGTGCAGGTACCAAGGCCAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGCAGGCACAGACACATACATTCATGTGCAGGTACCAAGGCCAT  690

seq1  GTGTGTGCATGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAT  740

seq1  GTATGCATGCGTGTAGGGACCAGGGCCATTCGCGCATGCGTATGTGTGGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATGCGTGTAGGGACCAGGGCCATTCGCGCATGCGTATGTGTGGA  790

seq1  GGAACCACGGCCGTGCGCGCATGCGTACGGCAGTGTGCATTTGATGCCAG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCACGGCCGTGCGCGCATGCGTACGGCAGTGTGCATTTGATGCCAG  840

seq1  GTTTGTCCTCATTGCTTTCTACTTATTTATTTCTTTTTATTTTGGAAATT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCTCATTGCTTTCTACTTATTTATTTCTTTTTATTTTGGAAATT  890

seq1  TGTGTATCTATGTGTCTGTGTATGCTCACCTGTGTACAGTACCCTCAGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCTATGTGTCTGTGTATGCTCACCTGTGTACAGTACCCTCAGAA  940

seq1  GCCAGAAGAGGTCATTTTATCTCTCTGGGGCTGGAGTTAGAGGCAGTAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAGAGGTCATTTTATCTCTCTGGGGCTGGAGTTAGAGGCAGTAGC  990

seq1  AATCTTCTTGACTAGGTTGTGGAAATTGAACTCTGGTCCTCTGCAAGAGC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTTGACTAGGTTGTGGAAATTGAACTCTGGTCCTCTGCAAGAGC  1040

seq1  AGCAGTGCCCTCCCAGGCCCCAGAAACAATTAAGTTTGATATTTTTTTGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCCCTCCCAGGCCCCAGAAACAATTAAGTTTGATATTTTTTTGA  1090

seq1  GCTCTTCAAACCTATCTTGGTTCAATCGATCACACAGACATTTAGATCTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCAAACCTATCTTGGTTCAATCGATCACACAGACATTTAGATCTC  1140

seq1  ATGAATTC  1148
      ||||||||
seq2  ATGAATTC  1148