BAC Information

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BAC

Clone NameB6Ng01-227M12
Chromosome6 (Build37)
Map Location 67,225,846 - 67,382,039
singlet/doubletdoublet
Overlap geneSerbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
Upstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318
Downstream geneTacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227M12.bB6Ng01-227M12.g
ACCGA041362GA041363
length1,1361,134
definitionB6Ng01-227M12.b B6Ng01-227M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,225,846 - 67,226,966)(67,380,911 - 67,382,039)
sequence
gaattcaaggccagcctagctacattacaagtttgagaccctctgaagct
agagaaaaaaggactagaaatataaagtactattttgatgagaaactctt
aatgatgagagaagcattgtattttgtgagcttgttgaaataggcatatc
actggaatatatacgaaagtaaatggaaaaagatggccttttacattgag
aatttttattacgttagttgatggtggcgtgcagcttcaattctagtact
tgggaggaagagacaggtggatctcttgagtttgaggtgagcctggtgta
cagagagagttcaggacagcaagtgttacacagataaaccctatcttgaa
aaacaaaacaaggcctggcagtggtggtgcatgcctttaatcccagcact
tgggaggcagaggcaggcagatttctttgttcgaggccagcctgatctac
agagttgagttccaggtcagccagggctacacagagaaaccctgtctcaa
aaaaaccaaaacaacaaaagaatttatatgtgaaatgtggtttactttgg
aggggtgagcataatagggattaatggtaccccgcaatactcagcacatc
ctttctctttattaaacaaaattgagtcacttttcagagtgattctcaaa
gactgtttctcagaagaaaattatatattcatggaatattaaaaagattt
ctctggtcaggacccaggagcagttgaagtaattatttctaatgaaaaca
atggtcaccatgatagagttagtctagtcttagtatagggaagccaaatg
taaggatatttgaaaggataagttttaagaagcaaaacttccagtagagg
tagttttttaaggtaacaattactgtcagaaattggtgaattactagggc
aattccagggctttattttctatttggctttataaccatttgggaaaatg
actttgatagaccttaatcaacttccttgtcaagattgaatacaaattaa
cttcaagaagtttataagaatagaatctgtccaaatataagaactactaa
agaaatttttagccatgattcctcacctaactccactgctatctttggaa
ggaaagcagagctcccaaaactagcaagcgatttgt
gaattctcagctgtcagacaaacccaatgaggtttctcacgacacatact
cacacaaaacatgtctgtgtgagttggccacacttgctgaagatgcactt
ctagaaacccgctgacctcaaatggatgtggtccaatttcctcacacaga
agatggtttcctggggtatacagtcaggcaatctggaaaggcaatcactt
tgtagtcctagctgaaggttgactctgcttcccttgagatcagtgactgt
cactttaaacagggtacagagaacactgacatggtcatctcgtggacagt
aatgctcagttaaaattgcttttatctcctttattaggtaatcatcaaga
cattggacttttgtcgggaatggtcttcttggccatcatgttgccgattt
tttctctgattgggatatttaacagatcacttcgaatagggtaggtttct
atagtttctggttcctggtttaggccatatatatgtactatcaaagtgta
ctcaattcaatttttactaaaaaaagacaccttaacatctttattttaaa
aaagagaaattattgtgcatgtataatgtgtgactaggaggatatgcacg
tgccacagggtgtgcatggaaatcacaggacagctttgtggagttggttc
tctctacctttatgtgcatttcaggaattaaacgcagatagatcatcagg
tttcgacagcgagatctttaccagctgagccatctcaccagccctgaaaa
tggaaagttaaaggacagatatttaataaatgcctatgcttgtcaccttt
tacacatatcattcaattaatcctcaaaatgatttcatcagaaaagctct
ctgtcccatattacagatgaacaaacaaaggcttagaaaaaaaggttgac
tcctccacccaaggtcctcaagcactcatcaaggagagacagtcgatatc
aatttccatgttcttcttctaacacagcactacattgtactaggcattat
ccacagtgtctggaatcttcccagtgatcacagccctgccttaacctcca
ttcaaacaaattagctggagtcaggtgttgaaacaggtggggcctgcttt
aatttgtcactctattacgactatgtttgatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67225846_67226966
seq2: B6Ng01-227M12.b_48_1183

seq1  GAATTCAAGGCCAGCCTAGCTACATTACAAGTTTGAGACCCTCTGAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTAGCTACATTACAAGTTTGAGACCCTCTGAAGCT  50

seq1  AGAGAAAAAAGGACTAGAAATATAAAGTACTATTTTGATGAGAAACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAAGGACTAGAAATATAAAGTACTATTTTGATGAGAAACTCTT  100

seq1  AATGATGAGAGAAGCATTGTATTTTGTGAGCTTGTTGAAATAGGCATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGAGAGAAGCATTGTATTTTGTGAGCTTGTTGAAATAGGCATATC  150

seq1  ACTGGAATATATACGAAAGTAAATGGAAAAAGATGGCCTTTTACATTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATATATACGAAAGTAAATGGAAAAAGATGGCCTTTTACATTGAG  200

seq1  AATTTTTATTACGTTAGTTGATGGTGGCGTGCAGCTTCAATTCTAGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTACGTTAGTTGATGGTGGCGTGCAGCTTCAATTCTAGTACT  250

seq1  TGGGAGGAAGAGACAGGTGGATCTCTTGAGTTTGAGGTGAGCCTGGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAAGAGACAGGTGGATCTCTTGAGTTTGAGGTGAGCCTGGTGTA  300

seq1  CAGAGAGAGTTCAGGACAGCAAGTGTTACACAGATAAACCCTATCTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGTTCAGGACAGCAAGTGTTACACAGATAAACCCTATCTTGAA  350

seq1  AAACAAAACAAGGCCTGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAGGCCTGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACT  400

seq1  TGGGAGGCAGAGGCAGGCAGATTTCTTTGTTCGAGGCCAGCCTGATCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGGCAGATTTCTTTGTTCGAGGCCAGCCTGATCTAC  450

seq1  AGAGTTGAGTTCCAGGTCAGCCAGGGCTACACAGAGAAACCCTGTCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAGTTCCAGGTCAGCCAGGGCTACACAGAGAAACCCTGTCTCAA  500

seq1  AAAAACCAAAACAACAAAAGAATTTATATGTGAAATGTGGTTTACTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAACAACAAAAGAATTTATATGTGAAATGTGGTTTACTTTGG  550

seq1  AGGGGTGAGCATAATAGGGATTAATGGTACCCCGCAATACTCAGCACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAGCATAATAGGGATTAATGGTACCCCGCAATACTCAGCACATC  600

seq1  CTTTCTCTTTATTAAACAAAATTGAGTCAC-TTTCAGAGTGATTCTCAAA  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTTCTCTTTATTAAACAAAATTGAGTCACTTTTCAGAGTGATTCTCAAA  650

seq1  GACTGTTTCTCAGAAGAAAATTATATATTCATGGAATATTAAAAAGATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTCTCAGAAGAAAATTATATATTCATGGAATATTAAAAAGATTT  700

seq1  CTCTGGTCAGGACCCAGGAGCAGTTGAAGTAATTATTTCTAATGAAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCAGGACCCAGGAGCAGTTGAAGTAATTATTTCTAATGAAAACA  750

seq1  ATGGTCACCATGATAGAG-TAGTCTAGTCTTAGTATAGGGAAGCCAAATG  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGGTCACCATGATAGAGTTAGTCTAGTCTTAGTATAGGGAAGCCAAATG  800

seq1  TAAGGATATTTG-AAGGATAAG-TTTAAGAAGCAAAACTTCCAGTAGA-G  845
      |||||||||||| ||||||||| ||||||||||||||||||||||||| |
seq2  TAAGGATATTTGAAAGGATAAGTTTTAAGAAGCAAAACTTCCAGTAGAGG  850

seq1  TAG-TTTTTAAGGT-ACAATTACTGTCAG-AATTGGTGAATTACTAGGGC  892
      ||| |||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TAGTTTTTTAAGGTAACAATTACTGTCAGAAATTGGTGAATTACTAGGGC  900

seq1  AATTCCAGGGCTTTA-TTTCTATTTGGCTTTATAACCATTT-GGAAAATG  940
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AATTCCAGGGCTTTATTTTCTATTTGGCTTTATAACCATTTGGGAAAATG  950

seq1  AC-TTGATAGACTTTATTCAACTTCC-TGTCAAGATTGAATACAAATTTA  988
      || ||||||||| ||| ||||||||| ||||||||||||||||||||| |
seq2  ACTTTGATAGACCTTAATCAACTTCCTTGTCAAGATTGAATACAAATTAA  1000

seq1  C-TCAGGGAAGTTATAAG-ATAGAATCTGTCCAAATATAAAGAACTACAT  1036
      | ||| | |  ||||||| ||||||||||||||||||| ||||||||| |
seq2  CTTCAAGAAGTTTATAAGAATAGAATCTGTCCAAATAT-AAGAACTAC-T  1048

seq1  AAAGATA-TTTTAGCAATGATGCTACA-CTAACTCACTTGCTATCTTTGG  1084
      ||||| | ||||||| ||||| |  || |||||||   ||||||||||||
seq2  AAAGAAATTTTTAGCCATGATTCCTCACCTAACTCCACTGCTATCTTTGG  1098

seq1  AAGG-AAGCAGAGCTTCCCAAAATAGCAAGTGATTTGT  1121
      |||| |||||||||| || ||| ||||||| |||||||
seq2  AAGGAAAGCAGAGCTCCCAAAACTAGCAAGCGATTTGT  1136

seq1: chr6_67380911_67382039
seq2: B6Ng01-227M12.g_69_1202 (reverse)

seq1  AACATC-AACATAGTCGGTAATAGAGTGACAAATTAAAACA-GCCCCACT  48
      |||||| ||||||||| ||||||||||||||||||||| || ||||||| 
seq2  AACATCAAACATAGTC-GTAATAGAGTGACAAATTAAAGCAGGCCCCACC  49

seq1  TGTTTTCACA-CTGACT-CAGCTATTTTGTTTGGATGGAGGTTAAGGCA-  95
      |||||  ||| |||||| |||||| |||||||| ||||||||||||||| 
seq2  TGTTTCAACACCTGACTCCAGCTAATTTGTTTGAATGGAGGTTAAGGCAG  99

seq1  GGCTGTGATCACTGGGAAGAATCCAGACACTGTGGATAATGCCTAGTACA  145
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCTGTGATCACTGGGAAGATTCCAGACACTGTGGATAATGCCTAGTACA  149

seq1  ATGTTAGTGCTGTGTTAGAAG-AGAACATGGAAATTGATATCGACTGTCT  194
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATG-TAGTGCTGTGTTAGAAGAAGAACATGGAAATTGATATCGACTGTCT  198

seq1  CTCCTTGATGAGTGCTTGAGGACCTTGGGTGGAGGAGTCAACCTTTTTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGATGAGTGCTTGAGGACCTTGGGTGGAGGAGTCAACCTTTTTTT  248

seq1  CTAAGCCTTTGTTTGTTCATCTGTAATATGGGACAGAGAGCTTTTCTGAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTTTGTTTGTTCATCTGTAATATGGGACAGAGAGCTTTTCTGAT  298

seq1  GAAATCATTTTGAGGATTAATTGAATGATATGTGT-AAAGGTGACAAGCA  343
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAATCATTTTGAGGATTAATTGAATGATATGTGTAAAAGGTGACAAGCA  348

seq1  TAGGCATTTATTAAATATCTGTCCTTTAACTTTCCATTTTCAGGGCTGGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTTATTAAATATCTGTCCTTTAACTTTCCATTTTCAGGGCTGGT  398

seq1  GAGATGGCTCAGCTGGTAAAGATCTCGCTGTCGAAACCTGATGATCTATC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCAGCTGGTAAAGATCTCGCTGTCGAAACCTGATGATCTATC  448

seq1  TGCGTTTAATTCCTGAAATGCACATAAAGGTAGAGAGAACCAACTCCACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTAATTCCTGAAATGCACATAAAGGTAGAGAGAACCAACTCCACA  498

seq1  AAGCTGTCCTGTGATTTCCATGCACACCCTGTGGCACGTGCATATCCTCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCCTGTGATTTCCATGCACACCCTGTGGCACGTGCATATCCTCC  548

seq1  TAGTCACACATTATACATGCACAATAATTTCTCTTTTTTAAAATAAAGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACACATTATACATGCACAATAATTTCTCTTTTTTAAAATAAAGAT  598

seq1  GTTAAGGTGTCTTTTTTTAGTAAAAATTGAATTGAGTACACTTTGATAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGTGTCTTTTTTTAGTAAAAATTGAATTGAGTACACTTTGATAGT  648

seq1  ACATATATATGGCCTAAACCAGGAACCAGAAACTATAGAAACCTACCCTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATGGCCTAAACCAGGAACCAGAAACTATAGAAACCTACCCTA  698

seq1  TTCGAAGTGATCTGTTAAATATCCCAATCAGAGAAAAAATCGGCAACATG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGTGATCTGTTAAATATCCCAATCAGAGAAAAAATCGGCAACATG  748

seq1  ATGGCCAAGAAGACCATTCCCGACAAAAGTCCAATGTCTTGATGATTACC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAAGAAGACCATTCCCGACAAAAGTCCAATGTCTTGATGATTACC  798

seq1  TAATAAAGGAGATAAAAGCAATTTTAACTGAGCATTACTGTCCACGAGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGGAGATAAAAGCAATTTTAACTGAGCATTACTGTCCACGAGAT  848

seq1  GACCATGTCAGTGTTCTCTGTACCCTGTTTAAAGTGACAGTCACTGATCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGTCAGTGTTCTCTGTACCCTGTTTAAAGTGACAGTCACTGATCT  898

seq1  CAAGGGAAGCAGAGTCAACCTTCAGCTAGGACTACAAAGTGATTGCCTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAGCAGAGTCAACCTTCAGCTAGGACTACAAAGTGATTGCCTTT  948

seq1  CCAGATTGCCTGACTGTATACCCCAGGAAACCATCTTCTGTGTGAGGAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTGCCTGACTGTATACCCCAGGAAACCATCTTCTGTGTGAGGAAA  998

seq1  TTGGACCACATCCATTTGAGGTCAGCGGGTTTCTAGAAGTGCATCTTCAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCACATCCATTTGAGGTCAGCGGGTTTCTAGAAGTGCATCTTCAG  1048

seq1  CAAGTGTGGCCAACTCACACAGACATGTTTTGTGTGAGTATGTGTCGTGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGGCCAACTCACACAGACATGTTTTGTGTGAGTATGTGTCGTGA  1098

seq1  GAAACCTCATTGGGTTTGTCTGACAGCTGAGAATTC  1129
      ||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCATTGGGTTTGTCTGACAGCTGAGAATTC  1134