BAC Information

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BAC

Clone NameB6Ng01-227M23
Chromosome6 (Build37)
Map Location 18,631,407 - 18,805,583
singlet/doubletdoublet
Overlap geneEG545829, Lsm8
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneAnkrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227M23.bB6Ng01-227M23.g
ACCGA041382GA041383
length1,146926
definitionB6Ng01-227M23.b B6Ng01-227M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,804,423 - 18,805,583)(18,631,407 - 18,632,328)
sequence
gaattctcaactcctccatctcccaaatgccactggttggtagcagatgg
ttacttagctaatgtaggaaatgcagctggtgagttctattttgccccca
tccttaccattatgcaacctacagacagaaattttactgaataacagaaa
tggaaaaaaaaaatcaaactaaattatatatctattttaaaagatgattg
tagtagctttaaatgaatgcagcctcatacattatatcctgatactaaaa
gagtttagtgtacttactaaatctttgcatcaagatgatgtggaggaggt
acacaagtgtggtacatatctacatgtctattttgtccctggcttagaag
ttgtcatcacgatcattttattactgcttacaggttggacagtgctgagg
ccaagcctgaaaccttacattactttccaccccctccccccactgctttt
tattttacttaattaaccaaaataactacatcagagttctaaatattaaa
gtgttcaacaaacttgggtctaaaccctgaagacagccttttccataagc
ctttctcagaactcacaaactgcgcatcatcgtttccttttgaactgact
ttgggttaattgataaaattacggcattcagagcaaatagagcccgcctg
ctttgtaaacaaagttctattgggaagacagccaagactacacacttatg
aattatctgtggctgtttatgttttaacacgagaggcaaccaactgttat
ggagagcgcatcacctttaaaacctaaaatttttactaattgcatcttca
tagaaaactgtatacttccacttaaaaactgaaaaatcctagaaagacaa
attttatttgaattaaaaggatgtctacatctctctgacactaagatacc
catccattttggtccacacgttaaactgatgagttcttgaatgcttaaaa
tgttaaatagaccttacagcactgtttctatgaatatttttaaaaggttt
atcaaagtagcctcacgagccgggaggtgatgtgcatgccttatcctagc
acttggggaggcagaggcaggcgattctgagtcaaggtcagctgctgtac
aagtggagtcagacagctaggctaccagaaatccttgtcttgagaa
gaattctggctccaaaatgatataacttttaacataagagagagcaactg
cagtctttataagccaatattctcactccgagaaccaaaacctctgtaga
aaagtgtctgttccctacatttttctaaaaggtgcaagggtgtgtgatct
tgtcattcctcaaattaccttccactctctttaatttaccgatgattctt
agctatatagtcatgcaacagatattatagtatataaaacaaatagtaag
cacttctcataaaggaaacatgtattaaaacagctcagctgggcatggtg
gtacacgcctttaatcccagcacttgggaggcagaggcaggcgaatttct
gagttcgaggccagcctggtctacagagtgagttccaggacagtcaggac
aatacagagaaaccctgtctcaaaaaaacaaacaaacaaaaaaaaaacca
aaaaaaaaaaaaaaaaaaaaaaaaacccaaaaaaaaaaaaaaaaaaaaaa
aaacccggcacataatctagtgaggaaaaaaggaaaattttattatgtta
aatgtggagatgcacaataaatataggtgcttccaagtagagaaatggat
aggaacaccttctcagaagcaatgcgtagatctggacctaatgttaagta
caactccaagggagataggcgctgaaggctccacccttttcatagcaatg
gagtcacaaaatggcttgaaggtgggtgtaggtacagccctgcattgctg
tattttagtggggcagggaagagaaccaggagtgagtggggagaaactgg
tagcagacaggagttattaacacaatccgttctaattactcaacactctg
tgcctgggagcccgtgccaagaatgtcacatttattatttcatggaggaa
gtttacagccggggcgggggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18804423_18805583
seq2: B6Ng01-227M23.b_50_1195 (reverse)

seq1  TTCTCAAGACAGGGTTTTTCTGTGTAGCCCTAGCTGTCCTGGAACTCACT  50
      ||||||||||| ||  |||||| |||| ||||||||| |||  ||||   
seq2  TTCTCAAGACAAGG-ATTTCTG-GTAG-CCTAGCTGT-CTG--ACTCCAC  44

seq1  TTGTACACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCT-C  99
      ||||||| || |||| ||||| ||||||||   ||||||||||||||| |
seq2  TTGTACAGCA-GCTGACCTTG-ACTCAGAA--TCGCCTGCCTCTGCCTCC  90

seq1  CCAAGTGCTAGGATTAAAGGCATGCACCATCACCTCCCGGCTCCGTGAGG  149
      ||||||||||||||  |||||||||| ||||||||||||||| |||||||
seq2  CCAAGTGCTAGGAT--AAGGCATGCA-CATCACCTCCCGGCT-CGTGAGG  136

seq1  CTACTTTGATAAACTTTTTAAAAATATTCATAGAAACAGTGCTGTAAGGT  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTACTTTGATAAACCTTTTAAAAATATTCATAGAAACAGTGCTGTAAGGT  186

seq1  CTATTTAAACATTTTAAGCATTCAAGGAACTCATCAGTTTAACGTGTGGA  249
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  CTATTT-AACATTTTAAGCATTCAA-GAACTCATCAGTTTAACGTGTGGA  234

seq1  CCAAAATGGATGGGTATCTTAGTGTCAGAGAGATGTAGACATCCTTTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGGATGGGTATCTTAGTGTCAGAGAGATGTAGACATCCTTTTAA  284

seq1  TTCAAATAAAATTTGTCTTTCTAGGATTTTTCAGTTTTTAAGTGGAAGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAAAATTTGTCTTTCTAGGATTTTTCAGTTTTTAAGTGGAAGTA  334

seq1  TACAGTTTTCTATGAAGATGCAATTAGTAAAAATTTTAGGTTTTAAAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTTCTATGAAGATGCAATTAGTAAAAATTTTAGGTTTTAAAGGT  384

seq1  GATGCGCTCTCCATAACAGTTGGTTGCCTCTCGTGTTAAAACATAAACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGCTCTCCATAACAGTTGGTTGCCTCTCGTGTTAAAACATAAACAG  434

seq1  CCACAGATAATTCATAAGTGTGTAGTCTTGGCTGTCTTCCCAATAGAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGATAATTCATAAGTGTGTAGTCTTGGCTGTCTTCCCAATAGAACT  484

seq1  TTGTTTACAAAGCAGGCGGGCTCTATTTGCTCTGAATGCCGTAATTTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACAAAGCAGGCGGGCTCTATTTGCTCTGAATGCCGTAATTTTAT  534

seq1  CAATTAACCCAAAGTCAGTTCAAAAGGAAACGATGATGCGCAGTTTGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACCCAAAGTCAGTTCAAAAGGAAACGATGATGCGCAGTTTGTGA  584

seq1  GTTCTGAGAAAGGCTTATGGAAAAGGCTGTCTTCAGGGTTTAGACCCAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGAAAGGCTTATGGAAAAGGCTGTCTTCAGGGTTTAGACCCAAG  634

seq1  TTTGTTGAACACTTTAATATTTAGAACTCTGATGTAGTTATTTTGGTTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAACACTTTAATATTTAGAACTCTGATGTAGTTATTTTGGTTAA  684

seq1  TTAAGTAAAATAAAAAGCAGTGGGGGGAGGGGGTGGAAAGTAATGTAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAAAATAAAAAGCAGTGGGGGGAGGGGGTGGAAAGTAATGTAAGG  734

seq1  TTTCAGGCTTGGCCTCAGCACTGTCCAACCTGTAAGCAGTAATAAAATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGCTTGGCCTCAGCACTGTCCAACCTGTAAGCAGTAATAAAATGA  784

seq1  TCGTGATGACAACTTCTAAGCCAGGGACAAAATAGACATGTAGATATGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATGACAACTTCTAAGCCAGGGACAAAATAGACATGTAGATATGTA  834

seq1  CCACACTTGTGTACCTCCTCCACATCATCTTGATGCAAAGATTTAGTAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTTGTGTACCTCCTCCACATCATCTTGATGCAAAGATTTAGTAAG  884

seq1  TACACTAAACTCTTTTAGTATCAGGATATAATGTATGAGGCTGCATTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAAACTCTTTTAGTATCAGGATATAATGTATGAGGCTGCATTCAT  934

seq1  TTAAAGCTACTACAATCATCTTTTAAAATAGATATATAATTTAGTTTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTACTACAATCATCTTTTAAAATAGATATATAATTTAGTTTGAT  984

seq1  TTTTTTTTTCCATTTCTGTTATTCAGTAAAATTTCTGTCTGTAGGTTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCATTTCTGTTATTCAGTAAAATTTCTGTCTGTAGGTTGCA  1034

seq1  TAATGGTAAGGATGGGGGCAAAATAGAACTCACCAGCTGCATTTCCTACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTAAGGATGGGGGCAAAATAGAACTCACCAGCTGCATTTCCTACA  1084

seq1  TTAGCTAAGTAACCATCTGCTACCAACCAGTGGCATTTGGGAGATGGAGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAAGTAACCATCTGCTACCAACCAGTGGCATTTGGGAGATGGAGG  1134

seq1  AGTTGAGAATTC  1161
      ||||||||||||
seq2  AGTTGAGAATTC  1146

seq1: chr6_18631407_18632328
seq2: B6Ng01-227M23.g_65_990

seq1  GAATTCTGGCTCCAAAATGATATAACTTTTAACATAAGAGAGAGCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTCCAAAATGATATAACTTTTAACATAAGAGAGAGCAACTG  50

seq1  CAGTCTTTATAAGCCAATATTCTCACTCCGAGAACCAAAACCTCTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTTATAAGCCAATATTCTCACTCCGAGAACCAAAACCTCTGTAGA  100

seq1  AAAGTGTCTGTTCCCTACATTTTTCTAAAAGGTGCAAGGGTGTGTGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCTGTTCCCTACATTTTTCTAAAAGGTGCAAGGGTGTGTGATCT  150

seq1  TGTCATTCCTCAAATTACCTTCCACTCTCTTTAATTTACCGATGATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCCTCAAATTACCTTCCACTCTCTTTAATTTACCGATGATTCTT  200

seq1  AGCTATATAGTCATGCAACAGATATTATAGTATATAAAACAAATAGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATAGTCATGCAACAGATATTATAGTATATAAAACAAATAGTAAG  250

seq1  CACTTCTCATAAAGGAAACATGTATTAAAACAGCTCAGCTGGGCATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCATAAAGGAAACATGTATTAAAACAGCTCAGCTGGGCATGGTG  300

seq1  GTACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCT  350

seq1  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGTCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGTCAGGAC  400

seq1  AATACAGAGAAACCCTGTCTCAAAAAAACAAACAAACAAAAAAAAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAGAAACCCTGTCTCAAAAAAACAAACAAACAAAAAAAAAACCA  450

seq1  AAAAAAAAAAAAAAAAAAAAAAAACCCCAAAAAAAAAAAAAAAAAAAAAA  500
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAACCCAAAAAAAAAAAAAAAAAAAAAA  500

seq1  AAACCCGGCACATAATCTAGTGAGGAGAAGAGGAGAATTTTATTATGTTA  550
      |||||||||||||||||||||||||| || |||| |||||||||||||||
seq2  AAACCCGGCACATAATCTAGTGAGGAAAAAAGGAAAATTTTATTATGTTA  550

seq1  AATGTGGAGATGCACAATAAATATAGGTGCTTCCAAGTAGAGAAATGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGAGATGCACAATAAATATAGGTGCTTCCAAGTAGAGAAATGGAT  600

seq1  AGGAACACCTTCTCAGAAGCAATGCGTAGATCTGGACCTAATGTTAAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACCTTCTCAGAAGCAATGCGTAGATCTGGACCTAATGTTAAGTA  650

seq1  CAACTCCAAGGGAGATAGGCGCTGAAGGCTCCACCC-TTTCATAGCAATG  699
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAACTCCAAGGGAGATAGGCGCTGAAGGCTCCACCCTTTTCATAGCAATG  700

seq1  GAGTCACAAAATGGCTTGAAGGTGGGTGTAGGTACAGCCCTGCATTGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACAAAATGGCTTGAAGGTGGGTGTAGGTACAGCCCTGCATTGCTG  750

seq1  TATTTTAGT-GGGCAGGGAAGAGAACCAGGAGTGAGT-GGGAGAAACTGG  797
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  TATTTTAGTGGGGCAGGGAAGAGAACCAGGAGTGAGTGGGGAGAAACTGG  800

seq1  TAGCAGACAGGAGTTATTAACACAATCCGTTCTAATTACTCAACACTCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGACAGGAGTTATTAACACAATCCGTTCTAATTACTCAACACTCTG  850

seq1  TGCCT-GGAG-CCGTGCCAAGAATGTCACATTTATTATTTCAT-GAGGAA  894
      ||||| |||| |||||||||||||||||||||||||||||||| ||||||
seq2  TGCCTGGGAGCCCGTGCCAAGAATGTCACATTTATTATTTCATGGAGGAA  900

seq1  GTTTACAGCCGGGGCGGGGGGTGGTGGG  922
      ||||||||||||||||||||  ||||||
seq2  GTTTACAGCCGGGGCGGGGG--GGTGGG  926