BAC Information

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BAC

Clone NameB6Ng01-228C04
Chromosome6 (Build37)
Map Location 79,378,262 - 79,379,490
singlet/doubletsinglet
Overlap genenone
Upstream geneReg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228C04.bB6Ng01-228C04.g
ACCGA041624GA041625
length1,2111,197
definitionB6Ng01-228C04.b B6Ng01-228C04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggtcacttaataacgaggaaaaccacagaagcaactggtaacg
tcattgttgattctgaataaaaatgtaatagacatttaatccagatattt
tccaattcctccaataacatttaagatgatgacatgtattcacccaccat
tgcttacttatgcaaactaaagacctaagagaaaacgaaaacttcaaact
gatatcatttagcaatttatctaggaggtgaaatgagtatctagttgata
aaattgttgccatgcaagtgcagggttctgggtttgatccctaaaacccg
tgctaaaactgaagctgtatgttaatactgcacactgaaatctcagtact
gggaggatggaaatgggtcacctttctggtttgcagctgtagtttcacaa
cttgtcaggaatgcttggcagattgaactcttcaactctaagctaggatg
aaaagtggaaatattcaggtgatgtccttggttatgtgaggacttcccac
ctctgaaatctccgctacctcacagcagcacttggcaccgaacctttccc
acagaagcctttgggggagtaccgcagattgacactttcccttctccata
tagtaggatttcttttattatcaaatatctaaataagtaaatctataagg
acatgaaacagaggctggcatgagaaaatggcaattaaatgacaaaagta
tctgaagattaatcttgtggggggatgaaaatattttagaatttcacgga
gtctttgattgcatagataaggagagcattaggtactatgaatccatgta
ttctgacataattagtcttatgatatgtatagttcaactaaataagaaaa
ttaacaagaaaagattaagctcccatgttcaaagcacaaggtaaattcag
taagatccacacacataagaatatgaacaaatgatttccgagcaggaatt
tttagagggctctattctttttctttcaccaaagtctagatttacagagt
caacctcactagacaattcagatacatctatcctattcgtcagacactcc
aaaatagaaaaaaaaaaatatggctttagtagctctaagtcaaaggtaca
gtattatagttagctatgaagacctgtttttgccagtgagctatagctac
aattttccgtatttccgagttcactgttgatgcctgggggagttttatgt
taatgaacaca

gaattcatatggaaaaaagaaatctcaattgaggaattgctttcatcaga
ttggccagtaaaagagtctcttgaggtatattcataattgctgattggtg
tggtggttccaatcctggacatgaggtcatgagtaatataaaaaagcagg
atgagcaagcataggaaagtaatcagatagcagatgcatctccatggcca
gctgatagttcctgccttggcttctctcaatgacttcttgtgagttggaa
gcgtaagatgaaatacactttttcttttccagcttgcttttggccagtgt
ttttcacagaacagaaaactaaacccaagccacaatgggggagtcaattt
gtgaccaacaatgttatggattctggatgcaaatgataggtttaaatcac
tgattctatttactaaatgaagctaccagtaccaggaatgggttacaact
aattgagttgctctccaaagggatcctatgggaattcccaacaactatac
ctatttcaagactatatgttgctttccacaaattctacaaaaagcaagac
tccattaaagataacatgtacacagctcactgaatactgataagttgaga
tggtacctacacagagccttctactttctgggctagcatttttggtatca
gaagatgttctgaagactacaaaagcagaaagttaaaccctaatccatcc
ataagcctttgatctacaatggtgtcctaccaacaatatatgctaaagca
aactcaggcacaaagcttgtggaaataaccaacatatcttacttggactt
cagacccatcctatgagatgacacccatataaaatgttgcatgggtgacc
aagaagaacaaggcctaaaactgaaaggacaaatggacatgtatgtccac
acataacccagaagcaatcttcattataagaccaccgcaaattaaaattt
aatgctgtgtaatagagttttactagagaaacatctacttcttagggtta
ggctatatgccagcagtagatgacaaacataaaatagacttactggtact
tctgacgttctatcaaataattgataactcacaaaacaggcctactttct
aataaatatacgtaattacttatttgcttcccatgatctatcaatggcac
ttcaaggcgaacggtaaccttttatgtattaacatgccaatgtgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_79378262_79379490
seq2: B6Ng01-228C04.b_46_1256

seq1  GAATTCTGGTCACTTAATAACGAGGAAAACCACAGAAGCAACTGGTAACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTCACTTAATAACGAGGAAAACCACAGAAGCAACTGGTAACG  50

seq1  TCATTGTTGATTCTGAATAAAAATGTAATAGACATTTAATCCAGATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTGATTCTGAATAAAAATGTAATAGACATTTAATCCAGATATTT  100

seq1  TCCAATTCCTCCAATAACATTTAAGATGATGACATGTATTCACCCACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTCCTCCAATAACATTTAAGATGATGACATGTATTCACCCACCAT  150

seq1  TGCTTACTTATGCAAACTAAAGACCTAAGAGAAAACGAAAACTTCAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTTATGCAAACTAAAGACCTAAGAGAAAACGAAAACTTCAAACT  200

seq1  GATATCATTTAGCAATTTATCTAGGAGGTGAAATGAGTATCTAGTTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTTAGCAATTTATCTAGGAGGTGAAATGAGTATCTAGTTGATA  250

seq1  AAATTGTTGCCATGCAAGTGCAGGGTTCTGGGTTTGATCCCTAAAACCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTGCCATGCAAGTGCAGGGTTCTGGGTTTGATCCCTAAAACCCG  300

seq1  TGCTAAAACTGAAGCTGTATGTTAATACTGCACACTGAAATCTCAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAACTGAAGCTGTATGTTAATACTGCACACTGAAATCTCAGTACT  350

seq1  GGGAGGATGGAAATGGGTCACCTTTCTGGTTTGCAGCTGTAGTTTCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGATGGAAATGGGTCACCTTTCTGGTTTGCAGCTGTAGTTTCACAA  400

seq1  CTTGTCAGGAATGCTTGGCAGATTGAACTCTTCAACTCTAAGCTAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCAGGAATGCTTGGCAGATTGAACTCTTCAACTCTAAGCTAGGATG  450

seq1  AAAAGTGGAAATATTCAGGTGATGTCCTTGGTTATGTGAGGACTTCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGAAATATTCAGGTGATGTCCTTGGTTATGTGAGGACTTCCCAC  500

seq1  CTCTGAAATCTCCGCTACCTCACAGCAGCACTTGGCACCGAACCTTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATCTCCGCTACCTCACAGCAGCACTTGGCACCGAACCTTTCCC  550

seq1  ACAGAAGCCTTTGGGGGAGTACCGCAGATTGACACTTTCCCTTCTCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCTTTGGGGGAGTACCGCAGATTGACACTTTCCCTTCTCCATA  600

seq1  TAGTAGGATTTCTTTTATTATCAAATATCTAAATAAGTAAATCTATAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGATTTCTTTTATTATCAAATATCTAAATAAGTAAATCTATAAGG  650

seq1  ACATGAAACAGAGGCTGGCATGAGAAAATGGCAATTAAATGACAAAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAACAGAGGCTGGCATGAGAAAATGGCAATTAAATGACAAAAGTA  700

seq1  TCTGAAGATTAATCTTGTGGGGGGATGAAAATATTTTAGAATTTCACGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATTAATCTTGTGGGGGGATGAAAATATTTTAGAATTTCACGGA  750

seq1  GTCTTTGATTGCATAGATAAGGAGAGCATTAGGTACTATGAATCCATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGATTGCATAGATAAGGAGAGCATTAGGTACTATGAATCCATGTA  800

seq1  TTCTGACATAATTAGTCTTATGATATGTATAGTTCAACTAAATAAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACATAATTAGTCTTATGATATGTATAGTTCAACTAAATAAGAAAA  850

seq1  TTAACAAGAAAAGATTAAGCTCCCATGTTCAAAGCACAAGGTAAATTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGAAAAGATTAAGCTCCCATGTTCAAAGCACAAGGTAAATTCAG  900

seq1  TAAGATCCACACACATAAGAATATGAACAAATGATTTCCGAGCAGGAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCCACACACATAAGAATATGAACAAATGATTTCCGAGCAGGAATT  950

seq1  TTTAGAGGGCTCTATTCTTTTTCTTTCACCAAAGTCTAGATTTACAGAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGGGCTCTATTCTTTTTCTTTCACCAAAGTCTAGATTTACAGAGT  1000

seq1  CAACCTCCACTAGAC-ATTCAGATAACATCTATCCTATTCGTCAAGACAC  1049
      |||||| |||||||| |||||||| |||||||||||||||||| ||||||
seq2  CAACCT-CACTAGACAATTCAGAT-ACATCTATCCTATTCGTC-AGACAC  1047

seq1  TCCAAAATAGAAAAAAAAAAATATGGCTTTAGGTAGCTCTAAAGTCAAAA  1099
      ||||||||||||||||||||||||||||||| |||||||| |||||||| 
seq2  TCCAAAATAGAAAAAAAAAAATATGGCTTTA-GTAGCTCT-AAGTCAAAG  1095

seq1  GTACAGTTATTTATTA-AGGTAGCTATGAAAGGAACTGGTTTTTGCAAAG  1148
      ||||||     ||||| || ||||||||||  || || ||||||||  ||
seq2  GTACAG-----TATTATAGTTAGCTATGAA--GACCT-GTTTTTGC-CAG  1136

seq1  TGAGCTTATAAGCTACAATTTTTCTGTATTTCAGAAGTTTTTACTTGTTG  1198
      ||||| ||| |||||||| ||||| ||||||| ||    || || |||||
seq2  TGAGC-TAT-AGCTACAA-TTTTCCGTATTTCCGA---GTTCAC-TGTTG  1179

seq1  ATGCTTTGGGGGAG-TTTATG-TAATGAACACA  1229
      ||||  |||||||| |||||| |||||||||||
seq2  ATGC-CTGGGGGAGTTTTATGTTAATGAACACA  1211


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