BAC Information

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BAC

Clone NameB6Ng01-228C05
Chromosome6 (Build37)
Map Location 37,697,686 - 37,838,259
singlet/doubletdoublet
Overlap geneLOC100039636, LOC665102, Trim24
Upstream genePtn, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2
Downstream geneSvopl, Atp6v0a4, LOC100039657, D630002J15Rik, D630045J12Rik, LOC665125, Zc3hav1l, Zc3hav1, Rpl30-ps1, Ttc26, D130059P03Rik, 3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228C05.bB6Ng01-228C05.g
ACCGA041626GA041627
length304947
definitionB6Ng01-228C05.b B6Ng01-228C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,697,686 - 37,697,989)(37,837,312 - 37,838,259)
sequence
tatgtaactaaggggtcatgtcctattatttggcaatgtacccggttcat
tctgaggttgttccaggaggcccttatctcaaaaatgttcttggaacagt
ctttagttaggagggttcgaactctagggtgaggagttcaggaatgcatt
ctggggtgaagagttcaggagtgttctgggaacaatctctagatgggagg
ggtcgggctctggggtgaggaagagttcagtaattttttatctttattct
tcaatctgcaagagaattaccctgggagctggagtggggatgggggtggg
gcgg
gaattcacttgaatccacacaacagttctcaagactagcctgggcaatca
agatcctgtgctaaaatcaccaaaaccaatgaaagatatatgtaggcatg
gggacatcaaagagaagcctattaacctgtatcattaatgtatgaataaa
aaacaataaaaaagagaaaatacagaattaaaacatgaaaaggggagcaa
gttacaggaagaagtttgaaattttgagcgtctaggtgacagagaaacat
tggctgctcccttaataatctttgcttccctggctgtgccaggcaggtag
tggagctggagggctgactccgcatttaacagtagcacctacatgtgtgt
tcataaccaatctcagcatacaggaggcaagagatggagttcagagccat
cctccactacatagacaactggagaacatttttggcgatatagtttcagg
ctagtgtaaactacaaaaaaataatgctaaagtatgctaagaagaagaaa
catgagggggtggggggaaaaaaggcatcaggtaggacccaaatatcact
gattgatgaaaattagttctaatgctttgtcttaattcagctcccaaaag
ccctgcttccagatgctgaggatcccatacaggagatggagatacgactt
gtagagtgcatgggcaaaggaccaagggagaagacgagcagggagaatca
ccatggcagggaagcagagagatctgaattaaaggcccatcgacatgtaa
gaatccggggaattggccccaggggccactcccctgcttgagtctgggaa
accaaagataaaaaatagatttagaaaatattaactcaagaacacgagag
gggagtatatgatagctgcagggaggtttagaagtatccagacattgagc
tagttaggcatattaaaaattcactgatgtgtggtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_37697686_37697989
seq2: B6Ng01-228C05.b_51_354

seq1  TATGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCGGTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACTAAGGGGTCATGTCCTATTATTTGGCAATGTACCCGGTTCAT  50

seq1  TCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGGAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTTGTTCCAGGAGGCCCTTATCTCAAAAATGTTCTTGGAACAGT  100

seq1  CTTTAGTTAGGAGGGTTCGAACTCTAGGGTGAGGAGTTCAGGAATGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTAGGAGGGTTCGAACTCTAGGGTGAGGAGTTCAGGAATGCATT  150

seq1  CTGGGGTGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGATGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGAAGAGTTCAGGAGTGTTCTGGGAACAATCTCTAGATGGGAGG  200

seq1  GGTCGGGCTCTGGGGTGAGGAAGAGTTCAGTAATTTTTTATCTTTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGGGCTCTGGGGTGAGGAAGAGTTCAGTAATTTTTTATCTTTATTCT  250

seq1  TCAATCTGCAAGAGAATTACCCTGGGAGCTGGAGTGGGGATGGGGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGCAAGAGAATTACCCTGGGAGCTGGAGTGGGGATGGGGGTGGG  300

seq1  GCGG  304
      ||||
seq2  GCGG  304

seq1: chr6_37837312_37838259
seq2: B6Ng01-228C05.g_67_1013 (reverse)

seq1  ACACACACACACACCACACATCAGCTGAATTTTTAATATGCCTAACTAGC  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACACACACACACACCACACATCAG-TGAATTTTTAATATGCCTAACTAGC  49

seq1  TCAATGTCTGGATACTTCTAAACCTCCCTGCAGCTATCATATACTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTCTGGATACTTCTAAACCTCCCTGCAGCTATCATATACTCCCCT  99

seq1  CTCGTGTTCTTGAGTTAATATTTTCTAAATCTATTTTTTATCTTTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTTCTTGAGTTAATATTTTCTAAATCTATTTTTTATCTTTGGTTT  149

seq1  CCCAGACTCAAGCAGGGGAGTGGCCCCTGGGGCCAATTCCCCGGATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTCAAGCAGGGGAGTGGCCCCTGGGGCCAATTCCCCGGATTCTT  199

seq1  ACATGTCGATGGGCCTTTAATTCAGATCTCTCTGCTTCCCTGCCATGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCGATGGGCCTTTAATTCAGATCTCTCTGCTTCCCTGCCATGGTG  249

seq1  ATTCTCCCTGCTCGTCTTCTCCCTTGGTCCTTTGCCCATGCACTCTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCTGCTCGTCTTCTCCCTTGGTCCTTTGCCCATGCACTCTACAA  299

seq1  GTCGTATCTCCATCTCCTGTATGGGATCCTCAGCATCTGGAAGCAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTATCTCCATCTCCTGTATGGGATCCTCAGCATCTGGAAGCAGGGCT  349

seq1  TTTGGGAGCTGAATTAAGACAAAGCATTAGAACTAATTTTCATCAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGCTGAATTAAGACAAAGCATTAGAACTAATTTTCATCAATCAG  399

seq1  TGATATTTGGGTCCTACCTGATGCCTTTTTTCCCCCCACCCCCTCATGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTGGGTCCTACCTGATGCCTTTTTTCCCCCCACCCCCTCATGTT  449

seq1  TCTTCTTCTTAGCATACTTTAGCATTATTTTTTTGTAGTTTACACTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTAGCATACTTTAGCATTATTTTTTTGTAGTTTACACTAGCC  499

seq1  TGAAACTATATCGCCAAAAATGTTCTCCAGTTGTCTATGTAGTGGAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTATATCGCCAAAAATGTTCTCCAGTTGTCTATGTAGTGGAGGAT  549

seq1  GGCTCTGAACTCCATCTCTTGCCTCCTGTATGCTGAGATTGGTTATGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAACTCCATCTCTTGCCTCCTGTATGCTGAGATTGGTTATGAAC  599

seq1  ACACATGTAGGTGCTACTGTTAAATGCGGAGTCAGCCCTCCAGCTCCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTAGGTGCTACTGTTAAATGCGGAGTCAGCCCTCCAGCTCCACT  649

seq1  ACCTGCCTGGCACAGCCAGGGAAGCAAAGATTATTAAGGGAGCAGCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTGGCACAGCCAGGGAAGCAAAGATTATTAAGGGAGCAGCCAAT  699

seq1  GTTTCTCTGTCACCTAGACGCTCAAAATTTCAAACTTCTTCCTGTAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTCACCTAGACGCTCAAAATTTCAAACTTCTTCCTGTAACTT  749

seq1  GCTCCCCTTTTCATGTTTTAATTCTGTATTTTCTCTTTTTTATTGTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCTTTTCATGTTTTAATTCTGTATTTTCTCTTTTTTATTGTTTTT  799

seq1  TATTCATACATTAATGATACAGGTTAATAGGCTTCTCTTTGATGTCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATACATTAATGATACAGGTTAATAGGCTTCTCTTTGATGTCCCCA  849

seq1  TGCCTACATATATCTTTCATTGGTTTTGGTGATTTTAGCACAGGATCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACATATATCTTTCATTGGTTTTGGTGATTTTAGCACAGGATCTTG  899

seq1  ATTGCCCAGGCTAGTCTTGAGAACTGTTGTGTGGATTCAAGTGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCAGGCTAGTCTTGAGAACTGTTGTGTGGATTCAAGTGAATTC  947