BAC Information

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BAC

Clone NameB6Ng01-228H08
Chromosome6 (Build37)
Map Location 54,947,366 - 55,116,671
singlet/doubletdoublet
Overlap geneGars, Crhr2
Upstream geneLOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik, Znrf2, Nod1, A030007L17Rik
Downstream geneInmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339, Ccdc129, Gsbs, LOC100041357, Pde1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228H08.bB6Ng01-228H08.g
ACCGA041866GA041867
length1,0301,124
definitionB6Ng01-228H08.b B6Ng01-228H08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,115,646 - 55,116,671)(54,947,366 - 54,948,481)
sequence
gaattctccagatatagcccacaacctttgtagaacagatcagcaaaaaa
aaaaaaaagtttagagtctaccatgaaaggaagtcagtgcaagaactcaa
agcaggaaccaggaagcacagactgaaacagaaaccatggaggaatgcag
cttactggcttgtctcccatggcttacttggcctgctttcttgtaccact
caggaccacctgcccagagatgggaccacccacagtgggctggaccctcc
cgtgtcaatcattactcaaggaaatgcaacataggcttacctgtaggtca
gtctgatggggacatttttttatggtgggttctttttctctggtgactct
agcatttgttgacaagcacaaaggacaggcactgagctctgactcagtgg
agagatgcaggctacccggggctcaaagcacatttgccacaagatgtacc
cagaacccttccctaggtggctgtaaaggtcagaccacctgccggcagtg
agaagtcaccactagccactccctgatcaaaaccagcactgggtttctga
ggggcacagggtccaaagctcaagaatcatttccaggcagggtggtgaga
accaaatgagactttcaatagcagggatgcctatggagactggggaaggt
tgtgtcctaaggagatccccctattaccatgaggtatgcatccagaagat
gagccacttcttgccttcttgaagataggctcctgcaggccagtactggt
ccaaagatcactaccaagcctctctgatgtctaaagtccagtatccccat
gttgggaacaaggctgtattggtgtggtggtgggctgcccctgacaaaaa
aaaaaaaaataaaagaaatccacctattgcactagtctgggaaaatcctg
ttggccggtggggttcatgaccaccagctaaatgatgcgtttgaagtctg
gtaaaggggcatgcagcttgcctaatggccttgtgtccaaggcaagtagg
tatggctacgacttgctgtcgtactgacct
gaattctatgtaaattcaatgcatgtctttgaaaggccctctgtgggccg
ggggtgagctttagggggctaaaagccaacctgagacaggtgctctggag
ttcttctctggccagtgaggaataaagacgcaagaatagagaagtgagca
aagcaaagggagatgattaagaaaaactgagaaaactcctgagcggacag
gaacccaaaagacaatgaaaatggatgtaccacctgcatggtccttttat
aggacttacagcagatactggacaaagattgagggactttgtctattgag
atcgcttaatttggggcatattgtgggccaggtcagtgggtcacccacgc
actgaaaaggtgtcttcccgctgcttgcccagtgggagagtcacacattg
aagccccactctgtccaactttaacctattggttggctggtgaccttggc
tcacctgctcacgatgccaaccttagcaagtgtggctggtctctgacctt
ggcaggaatcttgctgttctttgttctcaacgtttagctggctggtttgt
agtttaactacaggcctcttttcttttcctgcctacagagagctacctgc
tgccaggaacgcatttaacccagcgtgggcaaatgacttaagtgcccaga
cagagcaggtgactgaatgagggacaacatccctgtcagccttcccaagg
gtggcccttccctttggatacctcgcctcctgtgcagcagagaccagagg
actatatagttagaatagagcaaaaattcatatatacatttctctactaa
tggcaacaaagacaaagttatggaaaagcaagaatttttctgttttattt
tatttaatttgttttttgttcttttcaagatagggttttctcctatgaac
ccttggctgtcctggaacttgctctgtagaccagactggcctcaaactca
tagacgttcccaatgctgaggatttaagacatgggccaccacctggccag
gtcctcctgcttatctaatttaatagtaaaaattgaatttactccatttt
cataaatcaatagcaagcttacttctttttgcctttgcactgctatttac
taatgaacagtttctagggatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_55115646_55116671
seq2: B6Ng01-228H08.b_43_1072 (reverse)

seq1  AGGTCAGTAC-ACAGC-AGTCCTACCCATCCCT-CCTGCCTTGGACCACA  47
      |||||||||| ||||| |||| || |||| ||| | ||||||||||   |
seq2  AGGTCAGTACGACAGCAAGTCGTAGCCATACCTACTTGCCTTGGACACAA  50

seq1  GGCCCTT-GGCAGGGCTGCCTGCCCCTTTCCCAGCCTTC-AACGCCTCAC  95
      |||| || ||||  ||||| ||||||||| |||| |||| ||||| ||| 
seq2  GGCCATTAGGCA-AGCTGCATGCCCCTTTACCAGACTTCAAACGCATCAT  99

seq1  TTAGCTGGTGGTCCTTGATCCCCACCGGCCAATAGGATTCTCCCAGACTC  145
      |||||||||||| | ||| ||||||||||||| |||||| ||||||||| 
seq2  TTAGCTGGTGGT-CATGAACCCCACCGGCCAACAGGATTTTCCCAGACTA  148

seq1  TTGCAATAGGTGGATTTCTTTT-CTTTTTTTTTTTTTGTCAGGGGCAGCC  194
       |||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  GTGCAATAGGTGGATTTCTTTTATTTTTTTTTTTTTTGTCAGGGGCAGCC  198

seq1  CACCACCACACCAATACAGCCTTGTTCCCAACATGGGGATACTGGACTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACACCAATACAGCCTTGTTCCCAACATGGGGATACTGGACTTT  248

seq1  AGACCTCAGAGAGGCTTGGTAGTGATCTTTGGACCAGTACTGGCCTGCAG  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCAGAGAGGCTTGGTAGTGATCTTTGGACCAGTACTGGCCTGCAG  298

seq1  GAGCCTATCTTCATGAAGGCAAGAAGTGGCTCATCTTCTGGATGCATACC  344
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGCCTATCTTCAAGAAGGCAAGAAGTGGCTCATCTTCTGGATGCATACC  348

seq1  TCATGGTAATAGGGGGATCTCCTTAGGACACAACCTTCCCCAGTCTCCCT  394
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCATGGTAATAGGGGGATCTCCTTAGGACACAACCTTCCCCAGTCTCCAT  398

seq1  AGGCATCCCTGCTACTGAAAGTCTCATTTGGTTCTCACCACCCTGCCTGG  444
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGCATCCCTGCTATTGAAAGTCTCATTTGGTTCTCACCACCCTGCCTGG  448

seq1  AAATGATTCTTGAGCTCTGGACCCTGTGCCCCTCAGAAACCCAGTGCTGG  494
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAATGATTCTTGAGCTTTGGACCCTGTGCCCCTCAGAAACCCAGTGCTGG  498

seq1  TTTTGATCAGGGAGTGGCTAGTGGTGACTTCTCACTGCCGGCAGGTGGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCAGGGAGTGGCTAGTGGTGACTTCTCACTGCCGGCAGGTGGTC  548

seq1  TGACCTTTACAGCCACCTAGGGAAGGGTTCTGGGTACATCTTGTGGCAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTACAGCCACCTAGGGAAGGGTTCTGGGTACATCTTGTGGCAAA  598

seq1  TGTGCTTTGAGCCCCGGGTAGCCTGCATCTCTCCACTGAGTCAGAGCTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGAGCCCCGGGTAGCCTGCATCTCTCCACTGAGTCAGAGCTCA  648

seq1  GTGCCTGTCCTTTGTGCTTGTCAACAAATGCTAGAGTCACCAGAGAAAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTCCTTTGTGCTTGTCAACAAATGCTAGAGTCACCAGAGAAAAA  698

seq1  GAACCCACCATAAAAAAATGTCCCCATCAGACTGACCTACAGGTAAGCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACCATAAAAAAATGTCCCCATCAGACTGACCTACAGGTAAGCCT  748

seq1  ATGTTGCATTTCCTTGAGTAATGATTGACACGGGAGGGTCCAGCCCACTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGCATTTCCTTGAGTAATGATTGACACGGGAGGGTCCAGCCCACTG  798

seq1  TGGGTGGTCCCATCTCTGGGCAGGTGGTCCTGAGTGGTACAAGAAAGCAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTCCCATCTCTGGGCAGGTGGTCCTGAGTGGTACAAGAAAGCAG  848

seq1  GCCAAGTAAGCCATGGGAGACAAGCCAGTAAGCTGCATTCCTCCATGGTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTAAGCCATGGGAGACAAGCCAGTAAGCTGCATTCCTCCATGGTT  898

seq1  TCTGTTTCAGTCTGTGCTTCCTGGTTCCTGCTTTGAGTTCTTGCACTGAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCAGTCTGTGCTTCCTGGTTCCTGCTTTGAGTTCTTGCACTGAC  948

seq1  TTCCTTTCATGGTAGACTCTAAACTTTTTTTTTTTTTTGCTGATCTGTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCATGGTAGACTCTAAACTTTTTTTTTTTTTTGCTGATCTGTTC  998

seq1  TACAAAGGTTGTGGGCTATATCTGGAGAATTC  1026
      ||||||||||||||||||||||||||||||||
seq2  TACAAAGGTTGTGGGCTATATCTGGAGAATTC  1030

seq1: chr6_54947366_54948481
seq2: B6Ng01-228H08.g_67_1190

seq1  GAATTCTATGTAAATTCAATGCATGTCTTTGAAAGGCCCTCTGTGGGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTAAATTCAATGCATGTCTTTGAAAGGCCCTCTGTGGGCCG  50

seq1  GGGGTGAGCTTTAGGGTGCTAAAAGCCAACCTGAGACAGGTGCTCTGGAG  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGGTGAGCTTTAGGGGGCTAAAAGCCAACCTGAGACAGGTGCTCTGGAG  100

seq1  TTCTTCTCTGGCCAGTGAGGAATAAAGACGCAAGAATAGAGAAGTGAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTGGCCAGTGAGGAATAAAGACGCAAGAATAGAGAAGTGAGCA  150

seq1  AAGCAAAGGGAGATGATTAAGAAAAACTGAGAAAACTCCTGAGCGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGGGAGATGATTAAGAAAAACTGAGAAAACTCCTGAGCGGACAG  200

seq1  GAACCCAAAGGACAATGAAAATGGATGTACCACCTGCATGGTCCTTTTAT  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAAAAGACAATGAAAATGGATGTACCACCTGCATGGTCCTTTTAT  250

seq1  AGGACTTACAGCAGATACTGGACAAAGATTGAGGGACTTTGTCTATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTACAGCAGATACTGGACAAAGATTGAGGGACTTTGTCTATTGAG  300

seq1  ATCGCTTAATTTGGGGCATATTGTGGGCCAGGTCAGTGGGTCACCCACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTAATTTGGGGCATATTGTGGGCCAGGTCAGTGGGTCACCCACGC  350

seq1  ACTGAAAAGGTGTCTTCCCGCTGCTTGCCCAGTGGGAGAGTCACACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGGTGTCTTCCCGCTGCTTGCCCAGTGGGAGAGTCACACATTG  400

seq1  AAGCCCCACTCTGTCCAACTTTAACCTATTGGTTGGCTGGTGACCTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCACTCTGTCCAACTTTAACCTATTGGTTGGCTGGTGACCTTGGC  450

seq1  TCACCTGCTCACGATGCCAACCTTAGCAAGTGTGGCTGGTCTCTGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCTCACGATGCCAACCTTAGCAAGTGTGGCTGGTCTCTGACCTT  500

seq1  GGCAGGAATCTTGCTGTTCTTTGTTCTCAACGTTTAGCTGGCTGGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAATCTTGCTGTTCTTTGTTCTCAACGTTTAGCTGGCTGGTTTGT  550

seq1  AGTTTAACTACAGGCCTCTTTTCTTTTCCTGCCTACAGAGAGCTACCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAACTACAGGCCTCTTTTCTTTTCCTGCCTACAGAGAGCTACCTGC  600

seq1  TGCCAGGAACGCATTTAACCCAGCGTGGGCAAATGACTTAAGTGCCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGAACGCATTTAACCCAGCGTGGGCAAATGACTTAAGTGCCCAGA  650

seq1  CAGAGCAGGTGACTGAATGAGGGACAACATCCCTGTCAGCCTTCCCAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGGTGACTGAATGAGGGACAACATCCCTGTCAGCCTTCCCAAGG  700

seq1  GTGGCCCTTCCCTTTGGATACCTCGCCTCCTGTGCAGCAGAGACCAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCTTCCCTTTGGATACCTCGCCTCCTGTGCAGCAGAGACCAGAGG  750

seq1  ACTATATAGTTAGAATAGAGCAAAAA-TCATATATACATTTCTCTACTAA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTATATAGTTAGAATAGAGCAAAAATTCATATATACATTTCTCTACTAA  800

seq1  TGGCAACAAAGACAAAG-TATGGAAAAGCAAGAATTTTTCTGTTTTATTT  848
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGCAACAAAGACAAAGTTATGGAAAAGCAAGAATTTTTCTGTTTTATTT  850

seq1  TATTTAATTTGTTTTTTGTT-TTTTCAAGATAGGG-TTTCT-CTATGAAG  895
      |||||||||||||||||||| |||||||||||||| ||||| ||||||| 
seq2  TATTTAATTTGTTTTTTGTTCTTTTCAAGATAGGGTTTTCTCCTATGAAC  900

seq1  CCCTGGCTGTCCTGGAACTTGCTCTGTAGACCAGACTGGCCTCAAACTCA  945
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCTGTCCTGGAACTTGCTCTGTAGACCAGACTGGCCTCAAACTCA  950

seq1  TAGACGTTCCCAAATGCTGAGGATTAAAGACATGGGCCACCA-CTGGCCA  994
      ||||||||||| ||||||||||||| |||||||||||||||| |||||||
seq2  TAGACGTTCCC-AATGCTGAGGATTTAAGACATGGGCCACCACCTGGCCA  999

seq1  GGTTCTTCCTGC-TATCTTAATTTAAATAGTAAAAATTGAATTTTACT-C  1042
      || || |||||| |||| |||||| |||||||||||||||| |||||| |
seq2  GG-TCCTCCTGCTTATC-TAATTT-AATAGTAAAAATTGAA-TTTACTCC  1045

seq1  ATTTTCATAAATCAATAGGCCAGCTTAC-TCTTTT--GCTTTGCAC-GCT  1088
      ||||||||||||||||| || ||||||| ||||||   |||||||| |||
seq2  ATTTTCATAAATCAATA-GCAAGCTTACTTCTTTTTGCCTTTGCACTGCT  1094

seq1  A-TTACT-ATGAACAGGTTTCAGGGGTTTT  1116
      | ||||| |||||||| ||  |||| ||||
seq2  ATTTACTAATGAACAGTTTCTAGGGATTTT  1124