BAC Information

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BAC

Clone NameB6Ng01-228J17
Chromosome6 (Build37)
Map Location 96,390,198 - 96,391,294
singlet/doubletsinglet
Overlap geneC630007B19Rik
Upstream geneSuclg2, LOC665886, LOC545867, LOC100043685, 1700123L14Rik
Downstream geneC130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3, Frmd4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228J17.bB6Ng01-228J17.g
ACCGA041978GA041979
length1,1261,125
definitionB6Ng01-228J17.b B6Ng01-228J17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccaaaggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggtttttttgtttattccaga
tgaatttgcaaattgctccttctaattcgttgaagaatttgagttggaat
ttttatggggattgcattgaatctgtagattgcttttggcaagatagcca
tttttacaatgttgggtcctgccaatcccatgagcatgggagatctttcc
atcttctgagatcttctttatttctttcttcagggactttgaagtttttt
atcatacagatcttttcacttccttcttagagtcacgccgagatatttta
atattaattgtggcttattgagaaaggtgttgttttccctaatttctttc
tcagcctggttaattccttgtgagagaaaggcatttgaccttgtttgaag
tcattcttattatccagctactttcaccgaagctgtttattcaggttatg
aattctccggttagaattttctttac
gaattcaaggaaacatcaattccagaaaagcataaagaaaaacttagtgg
aattcactgagttcccaaatcccaaatgcgattttctaacctgcgttgtt
tcctcatgaaagctgaaatttatggaccagaattgagcatcctagctatg
cagcttacgaattcttgtaggatttacctttacgtttttctgtaatcgtt
ctccttttcagccattgaataaaatcaacaatttgtagtatgcatggcat
cacatctctgaaactcccaagcgtgtgtcgtttttccgaatgaactttga
tgctgcagtattggtttttgtgtcattggagattatttttacaaatcaat
cctgggagagaggtgatccaacagaatacccagaggaatcacgtggcata
cttggacactttattgacattaggccagcacttgtttttttttgtttgtt
tgtttgtttgttttttatttattttgtttgtttttttttcttcaaattat
ctgtgtatttgcatcagccaaggcatgttaataagaaggctgacttccag
cctatcatttgtgctgccttccagtggcctatgtggtatcagagtctgat
gttggaaaggacataaaaattttgctactatgaagaatgagcatgtcaga
aggaaatgaaagtagaatttgagagccattgtttattggatagacacaat
actaggggtactttcagaggactgtttttagttaatcttcccaactttgg
gaaaagataatatctcctcctttgaaattaataaaaaggatgagataaaa
ttcaaaactgagtttatatttctcaaatttatttcaattttgaaaaaaaa
taatttgtttgcatacctgcagtgttttttgaccgaatctactcctccag
tcatttccctccagctcatcctaggtccctccttccatgacattctccct
ttccaacttccacagttctcctctattaaaaaatgaacaaacaactggat
ttccaggttagtgctgtcctcagtgccattggtatatagggccatttcac
tggaagctatggaatagtttatctgggcctacatctctggagggaatact
ggtactcttcccaatgttagcagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_96390198_96391294
seq2: B6Ng01-228J17.g_71_1195

seq1  GAATTCAAGGAAACATCAATTCCAGAAAAGCATAAAGAAAAACTTAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGAAACATCAATTCCAGAAAAGCATAAAGAAAAACTTAGTGG  50

seq1  AATTCACTGAGTTCCCAAATCCCAAATGCGATTTTCTAACCTGCGTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTGAGTTCCCAAATCCCAAATGCGATTTTCTAACCTGCGTTGTT  100

seq1  TCCTCATGAAAGCTGAAATTTATGGACCAGAATTGAGCATCCTAGCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGAAAGCTGAAATTTATGGACCAGAATTGAGCATCCTAGCTATG  150

seq1  CAGCTTACGAATTCTTGTAGGATTTACCTTTACGTTTTTCTGTAATCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTACGAATTCTTGTAGGATTTACCTTTACGTTTTTCTGTAATCGTT  200

seq1  CTCCTTTTCAGCCATTGAATAAAATCAACAATTTGTAGTATGCATGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCAGCCATTGAATAAAATCAACAATTTGTAGTATGCATGGCAT  250

seq1  CACATCTCTGAAACTCCCAAGCGTGTGTCGTTTTTCCGAATGAACTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTGAAACTCCCAAGCGTGTGTCGTTTTTCCGAATGAACTTTGA  300

seq1  TGCTGCAGTATTGGTTTTTGTGTCATTGGAGATTATTTTTACAAATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGTATTGGTTTTTGTGTCATTGGAGATTATTTTTACAAATCAAT  350

seq1  CCTGGGAGAGAGGTGATCCAACAGAATACCCAGAGGAATCACGTGGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGAGAGGTGATCCAACAGAATACCCAGAGGAATCACGTGGCATA  400

seq1  CTTGGACACTTTATTGACATTAGGCCAGCACTTGTTTTTTTTTGTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACACTTTATTGACATTAGGCCAGCACTTGTTTTTTTTTGTTTGTT  450

seq1  TGTTTGTTTGTTTTTTATTTATTTTGTTTGTTTTTTTTTCTTCAAATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTTATTTATTTTGTTTGTTTTTTTTTCTTCAAATTAT  500

seq1  CTGTGTATTTGCATCAGCCAAGGCATGTTAATAAGAAGGCTGACTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATTTGCATCAGCCAAGGCATGTTAATAAGAAGGCTGACTTCCAG  550

seq1  CCTATCATTTGTGCTGCCTTCCAGTGGCCTATGTGGTATCAGAGTCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCATTTGTGCTGCCTTCCAGTGGCCTATGTGGTATCAGAGTCTGAT  600

seq1  GTTGGAAAGGACATAAAAATTTTGCTACTATGAAGAATGAGCATGTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAAGGACATAAAAATTTTGCTACTATGAAGAATGAGCATGTCAGA  650

seq1  AGGAAATGAAAGTAGAATTTGAGAGCCATTG-TTATTGGATAGACACAAT  699
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGAAATGAAAGTAGAATTTGAGAGCCATTGTTTATTGGATAGACACAAT  700

seq1  ACTAGGGGTAC-TTCAGAGGACTG-TTTTAGTTAATCTTCCCAACTTTGG  747
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  ACTAGGGGTACTTTCAGAGGACTGTTTTTAGTTAATCTTCCCAACTTTGG  750

seq1  GAAAAGATAATATCTCCTCCTTTGAAATTAATAAAAAGGATGAGATAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATAATATCTCCTCCTTTGAAATTAATAAAAAGGATGAGATAAAA  800

seq1  TTCAAAACTGAGTTTATATTTCTCAAATTTATTTCAATTTTGAAAAAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACTGAGTTTATATTTCTCAAATTTATTTCAATTTTGAAAAAAAA  850

seq1  TAA-TTGTTTGCATACCTGCAGTGTTTTTTGACCGAATCTACT-CTCCAG  895
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAATTTGTTTGCATACCTGCAGTGTTTTTTGACCGAATCTACTCCTCCAG  900

seq1  TCATTTCCCTCCAGCTCATCCTAGGT-CCTCC-TCCATGACA-TCTCCC-  941
      |||||||||||||||||||||||||| ||||| ||||||||| |||||| 
seq2  TCATTTCCCTCCAGCTCATCCTAGGTCCCTCCTTCCATGACATTCTCCCT  950

seq1  TTCCAAC-TCCACAG-TCT-CTCTATTTAAAAAATGAACAAACAACTG--  986
      ||||||| ||||||| ||| ||||| ||||||||||||||||||||||  
seq2  TTCCAACTTCCACAGTTCTCCTCTA-TTAAAAAATGAACAAACAACTGGA  999

seq1  ATTCCA-GTTAGTGCTGTCC-CAGTG-CATTGG--TATAGGGCCA-TTCA  1030
       ||||| ||||||||||||| ||||| ||||||  |||||||||| ||||
seq2  TTTCCAGGTTAGTGCTGTCCTCAGTGCCATTGGTATATAGGGCCATTTCA  1049

seq1  CTGG-AGC-ATGG-ATAGTTTATCTGGG-CTACATCTCTG--AGGAAAAC  1074
      |||| ||| |||| |||||||||||||| |||||||||||   |||| ||
seq2  CTGGAAGCTATGGAATAGTTTATCTGGGCCTACATCTCTGGAGGGAATAC  1099

seq1  TGGTACTCT--CCCATG-TAGCAGCC  1097
      |||||||||  || ||| ||||||||
seq2  TGGTACTCTTCCCAATGTTAGCAGCC  1125