BAC Information

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BAC

Clone NameB6Ng01-228K01
Chromosome6 (Build37)
Map Location 36,711,726 - 36,894,188
singlet/doubletdoublet
Overlap genePtn, Dgki
Upstream geneLOC100039327, 9330158H04Rik, Chrm2, EG620863, LOC100039370, LOC100039514
Downstream geneEG665024, Creb3l2, Akr1d1, LOC665046, Ybx1-ps2, LOC100039636, LOC665102, Trim24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228K01.bB6Ng01-228K01.g
ACCGA041994GA041995
length1,142930
definitionB6Ng01-228K01.b B6Ng01-228K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,711,726 - 36,712,861)(36,893,268 - 36,894,188)
sequence
gaattccacatagctattaaaatgcaatatgcggttgcttgtgctatact
tatgattcgtgtttattaagatgataatgtgtgaattccatgagtagaga
acaacacatgttgtaaagttgcatgcatgtacactccttcatgcacatgt
atgtagagtcatccatataatatggggcattttttccttttgaatacttt
tacaaattctttgcattttaatgaacaatttaaaaaattatcttttattt
ttattattttatttaactttttaaaaattgtatgtgtatggatgcttttt
gtctgtgtgccatatgatgcatgtcaagtgtccaccaagacctgcaaagg
gcatagcatctcctagaaagagttacaggtacctgtgaggtgccatgtgg
gtgctgagactcaaactcaggtcatctagaagagctgcatgtgcattaaa
tcggtctctccagcccaaattttactctttattataaaacgtggcttatc
aagtaaatggcactggacttgttttttgttttttgttttttgtttttaag
aatagcagggttgaaactgttccgaggtcctgtctcagacaaaaacaagg
gctactcttaaatatctaagagtctctgtggtggttgaggattggattca
ctgtaagaatcttattatcaaatcactcttgtgttctcaattgcacagct
gggaggaaacctgggcatgttatgctgagcagtcgcagctgtagcctcag
gaaagctacagctgctctctcagtgttccctgaccacctgcttgaccttc
agtagcaagtgctaattaatgtgctaaacaacaccccaggctcaatcagg
tataccgtgggctgaagaaagaccaaagaaactcttgtcttctctatggt
aagtgtagatgttcattttccccaaaactggaactgaagaaagcaaaggt
agattggccctttcattttctcttgagggctctaaaacttgccagtgtcc
agtcagttactgacacctttacatttctagccaaaggctaggtgccaaaa
tgccttcaagttcccttatgagagactttacaaggtgtcaccatactagg
tacatgtgccttagcacccatctctatgaccgtcactctcta

gaattcatgataatgcaaccctttagggtctcctgatatacaaaggacat
tattttataatatgctgatatttggaggcccaaagcattcatatgaattt
gttcaatttcaaatagcttcagataaagccaaagctaagtatgaaaagtt
tgaaatgccaggagtaagtggaagtcttgttaatcgcatacactgttccc
ctctgattcagacttccaacagttctttgttttcttttagctttctatga
tatttcttcaaaaatttattaggaaacttaacttacataataaaaactaa
tggtagatgaaagacaacaagatcaaaataataatcaaactcagcagatg
cagtgaaatatatggaaatgtgcaaagaagttaaaattacttttatcaga
aaattttcaataattaagtagcagtaacttatcaacgtttaatttagaat
tttcaaatcatgttaacatctggccatttatgaggaaacttcaattcttg
attgtattcagctagaattactttttaaatttatttccaggttcattctg
tctttctgtgcatgatactgcagatattttatatttatctcacccttagt
atagggatgaagtctgatggaccctggctcagtcactaatgtttggtcca
cttcttgtttctattttctccttaatatcactatatcttttttttttttt
taacaaatgttgagaagtgtttttaatcagagagaagtaattgtgctaag
tctattatttttttgcttggttagaaattgcagattccagccggggcagg
gtggcacacgccttttgatctcagcacttgggaggcagaggcaggcagat
tttctgagttcgaagccagcctgggtctacaaggtgagtttccaggacag
ccaggggctatacagaagaaacccctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36711726_36712861
seq2: B6Ng01-228K01.b_45_1186

seq1  GAATTCCACATAGCTATTAAAATGCAATATGCGGTTGCTTGTGCTATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATAGCTATTAAAATGCAATATGCGGTTGCTTGTGCTATACT  50

seq1  TATGATTCGTGTTTATTAAGATGATAATGTGTGAATTCCATGAGTAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCGTGTTTATTAAGATGATAATGTGTGAATTCCATGAGTAGAGA  100

seq1  ACAACACATGTTGTAAAGTTGCATGCATGTACACTCCTTCATGCACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACATGTTGTAAAGTTGCATGCATGTACACTCCTTCATGCACATGT  150

seq1  ATGTAGAGTCATCCATATAATATGGGGCATTTTTTCCTTTTGAATACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGTCATCCATATAATATGGGGCATTTTTTCCTTTTGAATACTTT  200

seq1  TACAAATTCTTTGCATTTTAATGAACAATTTAAAAAATTATCTTTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTCTTTGCATTTTAATGAACAATTTAAAAAATTATCTTTTATTT  250

seq1  TTATTATTTTATTTAACTTTTTAAAAATTGTATGTGTATGGATGCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTTATTTAACTTTTTAAAAATTGTATGTGTATGGATGCTTTTT  300

seq1  GTCTGTGTGCCATATGATGCATGTCAAGTGTCCACCAAGACCTGCAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGCCATATGATGCATGTCAAGTGTCCACCAAGACCTGCAAAGG  350

seq1  GCATAGCATCTCCTAGAAAGAGTTACAGGTACCTGTGAGGTGCCATGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCATCTCCTAGAAAGAGTTACAGGTACCTGTGAGGTGCCATGTGG  400

seq1  GTGCTGAGACTCAAACTCAGGTCATCTAGAAGAGCTGCATGTGCATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGACTCAAACTCAGGTCATCTAGAAGAGCTGCATGTGCATTAAA  450

seq1  TCGGTCTCTCCAGCCCAAATTTTACTCTTTATTATAAAACGTGGCTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTCTCTCCAGCCCAAATTTTACTCTTTATTATAAAACGTGGCTTATC  500

seq1  AAGTAAATGGCACTGGACTTGTTTTTTGTTTTTTGTTTTTTGTTTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGGCACTGGACTTGTTTTTTGTTTTTTGTTTTTTGTTTTTAAG  550

seq1  AATAGCAGGGTTGAAACTGTTCCGAGGTCCTGTCTCAGACAAAAACAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAGGGTTGAAACTGTTCCGAGGTCCTGTCTCAGACAAAAACAAGG  600

seq1  GCTACTCTTAAATATCTAAGAGTCTCTGTGGTGGTTGAGGATTGGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCTTAAATATCTAAGAGTCTCTGTGGTGGTTGAGGATTGGATTCA  650

seq1  CTGTAAGAATCTTATTATCAAATCACTCTTGTGTTCTCAATTGCACAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGAATCTTATTATCAAATCACTCTTGTGTTCTCAATTGCACAGCT  700

seq1  GGGAGGAAACCTGGGCATGTTATGCTGAGCAGTCGCAGCTGTAGCCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAACCTGGGCATGTTATGCTGAGCAGTCGCAGCTGTAGCCTCAG  750

seq1  GAAAGCTACAGCTGCTCTCTCAGTGTT-CCTGACCACCTGCTTGACCTTC  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAAGCTACAGCTGCTCTCTCAGTGTTCCCTGACCACCTGCTTGACCTTC  800

seq1  AGTAGCAAGTGCTAATTAATGTGCTAAACAACACCCCAGGCTCAATCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAAGTGCTAATTAATGTGCTAAACAACACCCCAGGCTCAATCAGG  850

seq1  TATACCGTGGGCTGAAGAAAGACCAAAGAAACTCTTGTCTTCTCTATGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCGTGGGCTGAAGAAAGACCAAAGAAACTCTTGTCTTCTCTATGGT  900

seq1  AAGTGTAGATG-TCATTTTCCCCAAAACTGGAACTGAAGAAAGCAAAGGT  948
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGATGTTCATTTTCCCCAAAACTGGAACTGAAGAAAGCAAAGGT  950

seq1  AGATTG--CCCTTCATTTTCTCTTGAGGGCTCTAAAAC-TGCCAGTGTCC  995
      ||||||  || ||||||||||||||||||||||||||| |||||||||||
seq2  AGATTGGCCCTTTCATTTTCTCTTGAGGGCTCTAAAACTTGCCAGTGTCC  1000

seq1  AGTCAGTTACTGACACCTTTACATTTCTAGCCAAAGGCAAGGTGGCAAAA  1045
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  AGTCAGTTACTGACACCTTTACATTTCTAGCCAAAGGCTAGGTGCCAAAA  1050

seq1  ATGCTTCAGGTTCC--TATGAGAGACTTACAAAGGTGGCCACCATACTAG  1093
         ||||| |||||  ||||||||||||   ||||| | |||||||||||
seq2  TGCCTTCAAGTTCCCTTATGAGAGACTTTACAAGGT-GTCACCATACTAG  1099

seq1  GACCATGTGCTTAAGCACCCATCTCTATGACCTTCACTCTCTA  1136
      |  ||||||| | ||||||||||||||||||| ||||||||||
seq2  GTACATGTGCCTTAGCACCCATCTCTATGACCGTCACTCTCTA  1142


seq1: chr6_36893268_36894188
seq2: B6Ng01-228K01.g_69_998 (reverse)

seq1  AGACA-GGGTTTC-TCTGTATAG-CCCTGGCTGTCCTGG-AACTCACTTT  46
      ||||| ||||||| ||||||||| ||||||||||||||| ||||||| ||
seq2  AGACAGGGGTTTCTTCTGTATAGCCCCTGGCTGTCCTGGAAACTCACCTT  50

seq1  GTAGA-CCAGGCTGGCTTCGAACTCAG-AAATCTGCCTGCCTCTGCCTCC  94
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAGACCCAGGCTGGCTTCGAACTCAGAAAATCTGCCTGCCTCTGCCTCC  100

seq1  CAAGTGCTGGGATC-AAAGGCGTGTGCCACCCTG-CCCGGCTGGAATCTG  142
      ||||||||| |||| ||||||||||||||||||| |||||||||||||||
seq2  CAAGTGCTGAGATCAAAAGGCGTGTGCCACCCTGCCCCGGCTGGAATCTG  150

seq1  CAATTTCTAACCAAGC-AAAAAATAATAGACTTAGCACAATTACTTCTCT  191
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAATTTCTAACCAAGCAAAAAAATAATAGACTTAGCACAATTACTTCTCT  200

seq1  CTGATTAAAAACACTTCTCAACATTTGTTAAAAAAAAAAAAAAGATATAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAAAAACACTTCTCAACATTTGTTAAAAAAAAAAAAAAGATATAG  250

seq1  TGATATTAAGGAGAAAATAGAAACAAGAAGTGGACCAAACATTAGTGACT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTAAGGAGAAAATAGAAACAAGAAGTGGACCAAACATTAGTGACT  300

seq1  GAGCCAGGGTCCATCAGACTTCATCCCTATACTAAGGGTGAGATAAATAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGGTCCATCAGACTTCATCCCTATACTAAGGGTGAGATAAATAT  350

seq1  AAAATATCTGCAGTATCATGCACAGAAAGACAGAATGAACCTGGAAATAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTGCAGTATCATGCACAGAAAGACAGAATGAACCTGGAAATAA  400

seq1  ATTTAAAAAGTAATTCTAGCTGAATACAATCAAGAATTGAAGTTTCCTCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAAGTAATTCTAGCTGAATACAATCAAGAATTGAAGTTTCCTCA  450

seq1  TAAATGGCCAGATGTTAACATGATTTGAAAATTCTAAATTAAACGTTGAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGCCAGATGTTAACATGATTTGAAAATTCTAAATTAAACGTTGAT  500

seq1  AAGTTACTGCTACTTAATTATTGAAAATTTTCTGATAAAAGTAATTTTAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTGCTACTTAATTATTGAAAATTTTCTGATAAAAGTAATTTTAA  550

seq1  CTTCTTTGCACATTTCCATATATTTCACTGCATCTGCTGAGTTTGATTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGCACATTTCCATATATTTCACTGCATCTGCTGAGTTTGATTAT  600

seq1  TATTTTGATCTTGTTGTCTTTCATCTACCATTAGTTTTTATTATGTAAGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGATCTTGTTGTCTTTCATCTACCATTAGTTTTTATTATGTAAGT  650

seq1  TAAGTTTCCTAATAAATTTTTGAAGAAATATCATAGAAAGCTAAAAGAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTCCTAATAAATTTTTGAAGAAATATCATAGAAAGCTAAAAGAAA  700

seq1  ACAAAGAACTGTTGGAAGTCTGAATCAGAGGGGAACAGTGTATGCGATTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACTGTTGGAAGTCTGAATCAGAGGGGAACAGTGTATGCGATTA  750

seq1  ACAAGACTTCCACTTACTCCTGGCATTTCAAACTTTTCATACTTAGCTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTTCCACTTACTCCTGGCATTTCAAACTTTTCATACTTAGCTTT  800

seq1  GGCTTTATCTGAAGCTATTTGAAATTGAACAAATTCATATGAATGCTTTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTATCTGAAGCTATTTGAAATTGAACAAATTCATATGAATGCTTTG  850

seq1  GGCCTCCAAATATCAGCATATTATAAAATAATGTCCTTTGTATATCAGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAAATATCAGCATATTATAAAATAATGTCCTTTGTATATCAGGA  900

seq1  GACCCTAAAGGGTTGCATTATCATGAATTC  921
      ||||||||||||||||||||||||||||||
seq2  GACCCTAAAGGGTTGCATTATCATGAATTC  930


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