BAC Information

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BAC

Clone NameB6Ng01-228L05
Chromosome6 (Build37)
Map Location 34,920,804 - 34,921,539
singlet/doubletsinglet
Overlap gene2010107G12Rik
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8
Downstream geneCnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312, LOC100039327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228L05.bB6Ng01-228L05.g
ACCGA042050GA042051
length1,242738
definitionB6Ng01-228L05.b B6Ng01-228L05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgttttgctcagtactccattttttaattgggttatatttttgg
agtctaacttctcgaatactttatatatttttaaaattatccctctgtgg
gatgtaggcttagtgaagctcttttcccagtctgtaggctgctgttttgt
cctattgatagtgtcctttgccttacagaagcttttaagtttaaagaggt
cccatttatcttatgaattgttgatcttagaacctgagccattggtgttc
tggtccggaaattttctcccatgctgatgtattcaaggctattccccact
ttttcttcgattagattctagtgtatctggtattatattggggaccttga
tccacttagacttaagctttatacagggtgataaatatggatcaatttgc
attcttctacatgtagaccgacaattagaacagcaccatttgttgaagat
gctttcccccatggtatggttttggcttctttgtcaaaaatcaagtgtct
gtagctgtgtaggtttatatctgggtctttgaatcgattccaatgatcag
cctgtctgtttctgtaccaataccatacagtttcctatcactattgatct
gtagtacagcttgaggtcagggatggagatacctctagaagttcttttat
tgttcataattattttgactatcctggattttgggttcttccagatgaaa
ttgagaattgctctttcaagatctgttaaaaaaaaaatgtgttggaattt
tgatggaattgaattgaatctgtacatttttttctagtaagatggccatt
ttcactaagttaatcctaccaatccatgagcttcggagatctttccatct
tctgatatcttcttcagtttctttcttcagggacttgaagttcttatcat
acaggtcttttatttgcttggttagagatacaccgagatattttatatta
tttgtggctattgtgaaagaggtgtttcccctgattgtctttctcagccc
tttgtcatttgtataaacctaggcctactgatttttttgctttgacttga
attttactatccagccccttgactgaagtgatgatcagcaaatatgagtc
gtcggatggaattctgggcgggttactagaggtactaatatgtcacctgt
gcaaatgacgaatcctttggacttgctcgtgcctaatcgatactcaccat
gaactttcgtcattgaagtacgatgcgttgcttcatacgtca
gaattccaggagaggataggacacccactcactgtacctggcctgagagc
tgtgaaggcctttccctgtgaagggctggcagctgtagcccctgatggtc
ctcagagctcccgtgacatgactctgggggctctcctgtgtacccctccc
cccacttactgctcacttctgaaacccactgagtttgtaacatgagacaa
cgccatttatttcaatcaggacactgagtttccagggtaatctctggagg
aaataaaaggcctgtgcgaagctttggatttaactgtctctggcattaaa
aggaggtttcctctgaagagatgtgctgatgaggtgtgtccagttttaga
tcaaaagactgtggaaagagaaggtggctatttctgaggtgattttaatt
cactctttattatgtttttcattatttgtcatctacttgccttcaaagtc
catgagatactttatggcgaggaaagatactcattgctttgtttgtcttg
ttgtttgttcgggttttgggtttttgtttgtttttgttttttcaagacag
cttttcctatgtagccctgggagtcctggaacttgctctgtacttccggg
ctggccttactcgcagacttcacctgaatctcaaatgcttggatctaacg
cctatgatgccccaggccggctaagtatatgtgttatataggactaaatg
gccattttgttattttaagaccgcactctctaagctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34920804_34921539
seq2: B6Ng01-228L05.g_67_804 (reverse)

seq1  GTAGGTTAGAGAGTGCAGGC-TCACATAACATGCACTG---ATGTTAGTC  46
      |||| ||||||||||| | | | | ||||||   | ||   || ||||||
seq2  GTAGCTTAGAGAGTGCGGTCTTAAAATAACA--AAATGGCCAT-TTAGTC  47

seq1  TGTAAAAACAGAAATAGTAAGCCGGGCAGTGGTATCATAGGCCTTTGATC  96
          | |||| | ||| | |||||| | | || ||||||||| || ||||
seq2  CTATATAACACATATACTTAGCCGGCCTGGGGCATCATAGGCGTTAGATC  97

seq1  CTAGCACTTGTGAGTCAGGTGAACTATGAGAGTAAGGCCAGCCCGG-TCT  145
      | |||| ||| || ||||||||| | || |||||||||||||||||   |
seq2  CAAGCATTTGAGATTCAGGTGAAGTCTGCGAGTAAGGCCAGCCCGGAAGT  147

seq1  ACAGAGCAAGTTCCAGGACAGCCAGGGCTACATAGGAAAAGCTGTCTTGA  195
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  ACAGAGCAAGTTCCAGGACTCCCAGGGCTACATAGGAAAAGCTGTCTTGA  197

seq1  AAAAACAAAAACAAACAAAAACCCAAAACCCGAACAAACAACAAGACAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAACAAACAAAAACCCAAAACCCGAACAAACAACAAGACAAA  247

seq1  CAAAGCAATGAGTATCTTTCCTCGCCATAAAGTATCTCATGGACTTTGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAATGAGTATCTTTCCTCGCCATAAAGTATCTCATGGACTTTGAA  297

seq1  GGCAAGTAGATGACAAATAATGAAAAACATAATAAAGAGTGAATTAAAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTAGATGACAAATAATGAAAAACATAATAAAGAGTGAATTAAAAT  347

seq1  CACCTCAGAAATAGCCACCTTCTCTTTCCACAGTCTTTTGATCTAAAACT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGAAATAGCCACCTTCTCTTTCCACAGTCTTTTGATCTAAAACT  397

seq1  GGACACACCTCATCAGCACATCTCTTCAGAGGAAACCTCCTTTTAATGCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACCTCATCAGCACATCTCTTCAGAGGAAACCTCCTTTTAATGCC  447

seq1  AGAGACAGTTAAATCCAAAGCTTCGCACAGGCCTTTTATTTCCTCCAGAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGTTAAATCCAAAGCTTCGCACAGGCCTTTTATTTCCTCCAGAG  497

seq1  ATTACCCTGGAAACTCAGTGTCCTGATTGAAATAAATGGCGTTGTCTCAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCTGGAAACTCAGTGTCCTGATTGAAATAAATGGCGTTGTCTCAT  547

seq1  GTTACAAACTCAGTGGGTTTCAGAAGTGAGCAGTAAGTGGGGGGAGGGGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAAACTCAGTGGGTTTCAGAAGTGAGCAGTAAGTGGGGGGAGGGGT  597

seq1  ACACAGGAGAGCCCCCAGAGTCATGTCACGGGAGCTCTGAGGACCATCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGAGAGCCCCCAGAGTCATGTCACGGGAGCTCTGAGGACCATCAG  647

seq1  GGGCTACAGCTGCCAGCCCTTCACAGGGAAAGGCCTTCACAGCTCTCAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACAGCTGCCAGCCCTTCACAGGGAAAGGCCTTCACAGCTCTCAGG  697

seq1  CCAGGTACAGTGAGTGGGTGTCCTATCCTCTCCTGGAATTC  736
      |||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACAGTGAGTGGGTGTCCTATCCTCTCCTGGAATTC  738