BAC Information

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BAC

Clone NameB6Ng01-228P02
Chromosome6 (Build37)
Map Location 136,947,677 - 137,097,467
singlet/doubletdoublet
Overlap geneRerg
Upstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h
Downstream genePtpro, Eps8, Strap, Dera, 9830102E05Rik, Mgst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228P02.bB6Ng01-228P02.g
ACCGA042222GA042223
length1,113737
definitionB6Ng01-228P02.b B6Ng01-228P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,096,355 - 137,097,467)(136,947,677 - 136,948,409)
sequence
gaattcagtccctaggacctacatgatggaaggaaggaaccaactcctgt
aagttgtcctctgatctacgcacacacacatatgtttttgtaatcccgac
tgcgtgtgacttatactggatttatactagtgtgcacctgtgtgatggct
aaagctaaaatcccaggtacttggagcctaagtgatctgtgaatttctat
cttttaagtgactagacgatattgagacataaagtctatgtttatttagt
ttcacatttgattttttacttgcatgcagggcaaatcccactttagaata
tgtgaatatatgacaagtatgaaatggcctgtatcctacacactgagatc
tgtactagccccactgtagcctggtataaaccaaacaagaacattccata
aaaatgctggggacacaatggtatcacacagtggaaacagttcataaaat
gtatatgctattgaagacatagtaactcacttatctctaaatggctacat
tgggaaagatacaggacactgcccccaggacaccgccacccagggtctca
cacacatctgatttacatgaagcagatgatgagattctggacatttgagc
tggtgatattttggcctgaggctacaatgggctgagactcttgagggact
tgggataaggtatgctgcacacgagtctgtctttagaggtcacagagcaa
actctggtggatggaatcacagggtccctagtcaactggctagtttaaaa
aacgtgtcactatgttcccttatgtgaaaaggggactttgcagtgagatt
gagtttatgaatacagagggaaccgaacctaaaagttgaaagcgagggac
ctttccaggctaggcttataggcagaggccataggaagatgggactaaga
agtgacatgggcacataatgggtctatagactttttgttttcagtctttt
tttttttcccattttttaagtaggtcatttaactcatttaacattcaaat
gcctatatcaaaagtcccccaatatccaccccaccccttgtttctagtct
aagcgcctgtggacaggcgaatattttgaacaactcctcatggccaattc
tagtaatgacaaa
gaattcttgcccgtgagataatatgagtcacattttgaatcactgtgaca
agcatctggtgtgtgaaacttagaaagagaaaaggtttgggatagctctg
ctttaagtctcagatcttgagtgattcgtgccattattcttgtcctttgt
caaggaagcacgctgtggtaggagcttagggatgcaaaaccactcacctc
atgtccagggagccagagaatgcagaatcccacaacccccttggacagca
tgtcccggatgagttaggacttgcctctaggctcaacctcttaaagatcc
tatcagctttgtacagtgtcccactcagttctgtccacacgcatctgggg
agctttctaaatctgttccgaagccataggatattacctttgctccgtct
gtcttcccaagaggggactctgcggaggagtgcacaggtctgatgtgaga
atgtagagtgacataactacttccccccggagtgtgggagtgtgaccgag
cacacttcagaagcaactctggggagggtggtcttcttttggctcatggt
ttcagagcgatttcagtccaccatggcaggatggccactgctccctgtgg
ctctagagtgcttggagacaaaaggcaaagcattttacctgcgaacagat
agtaaacagagaacacaggccagaatcaggcacagacaggtcaaaaattc
ccctattctcaccagccaggctcccacatggtaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_137096355_137097467
seq2: B6Ng01-228P02.b_46_1158 (reverse)

seq1  TTTGTCATTACTAGATTTGTGCACTGAGGGAGTTG-TCAAAATATCTGCC  49
      ||||||||||||||| ||| ||  ||| ||||||| |||||||||  |||
seq2  TTTGTCATTACTAGAATTG-GCCATGA-GGAGTTGTTCAAAATATTCGCC  48

seq1  TGT-CACAGGCGCCTTTAAGACTGAAAACAAGGGGT-GGGTGGATA-TGG  96
      ||| |||||||||   | |||||  ||||||||||| ||||||||| |||
seq2  TGTCCACAGGCGC---TTAGACTAGAAACAAGGGGTGGGGTGGATATTGG  95

seq1  GGGACTTTTGGTATA-GCATTGGAAATGTAAATGAGTTAAAT-ACCTA-A  143
      |||||||||| |||| ||||| |||   |||||||||||||| |||||  
seq2  GGGACTTTTGATATAGGCATTTGAATGTTAAATGAGTTAAATGACCTACT  145

seq1  TAAAAAATGGAAAAAAAAAAAAGACTGAAAACAAAAAAGTCTTATAGAAC  193
      |||||||||| ||||||||||||||||||||| |||||||| |||||| |
seq2  TAAAAAATGGGAAAAAAAAAAAGACTGAAAAC-AAAAAGTC-TATAGACC  193

seq1  CATTATGTGCCCATGTCACTTCTTAGTCCCATCTTCCTATGGCCTCTGCC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGTGCCCATGTCACTTCTTAGTCCCATCTTCCTATGGCCTCTGCC  243

seq1  TCTAAGCCTAGCCTGGAAAGGTCCCTCGCTTTCAACTTTTAGGTTCGGTT  293
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCCTAGCCTGGAAAGGTCCCTCGCTTTCAACTTTTAGGTTCGGTT  293

seq1  CCCTCTGTATTCATAAACTCAATCTCACTGCAAAGTCCCCTTTTCACATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTATTCATAAACTCAATCTCACTGCAAAGTCCCCTTTTCACATA  343

seq1  AGGGAACATAGTGACACGTTTTTTAAACTAGCCAGTTGACTAGGGACCCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACATAGTGACACGTTTTTTAAACTAGCCAGTTGACTAGGGACCCT  393

seq1  GTGATTCCATCCACCAGAGTTTGCTCTGTGACCTCTAAAGACAGACTCGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCATCCACCAGAGTTTGCTCTGTGACCTCTAAAGACAGACTCGT  443

seq1  GTGCAGCATACCTTATCCCAAGTCCCTCAAGAGTCTCAGCCCATTGTAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCATACCTTATCCCAAGTCCCTCAAGAGTCTCAGCCCATTGTAGC  493

seq1  CTCAGGCCAAAATATCACCAGCTCAAATGTCCAGAATCTCATCATCTGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCAAAATATCACCAGCTCAAATGTCCAGAATCTCATCATCTGCT  543

seq1  TCATGTAAATCAGATGTGTGTGAGACCCTGGGTGGCGGTGTCCTGGGGGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAAATCAGATGTGTGTGAGACCCTGGGTGGCGGTGTCCTGGGGGC  593

seq1  AGTGTCCTGTATCTTTCCCAATGTAGCCATTTAGAGATAAGTGAGTTACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTGTATCTTTCCCAATGTAGCCATTTAGAGATAAGTGAGTTACT  643

seq1  ATGTCTTCAATAGCATATACATTTTATGAACTGTTTCCACTGTGTGATAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCAATAGCATATACATTTTATGAACTGTTTCCACTGTGTGATAC  693

seq1  CATTGTGTCCCCAGCATTTTTATGGAATGTTCTTGTTTGGTTTATACCAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTCCCCAGCATTTTTATGGAATGTTCTTGTTTGGTTTATACCAG  743

seq1  GCTACAGTGGGGCTAGTACAGATCTCAGTGTGTAGGATACAGGCCATTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGGGGCTAGTACAGATCTCAGTGTGTAGGATACAGGCCATTTC  793

seq1  ATACTTGTCATATATTCACATATTCTAAAGTGGGATTTGCCCTGCATGCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTCATATATTCACATATTCTAAAGTGGGATTTGCCCTGCATGCA  843

seq1  AGTAAAAAATCAAATGTGAAACTAAATAAACATAGACTTTATGTCTCAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAATCAAATGTGAAACTAAATAAACATAGACTTTATGTCTCAAT  893

seq1  ATCGTCTAGTCACTTAAAAGATAGAAATTCACAGATCACTTAGGCTCCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCTAGTCACTTAAAAGATAGAAATTCACAGATCACTTAGGCTCCAA  943

seq1  GTACCTGGGATTTTAGCTTTAGCCATCACACAGGTGCACACTAGTATAAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGGATTTTAGCTTTAGCCATCACACAGGTGCACACTAGTATAAA  993

seq1  TCCAGTATAAGTCACACGCAGTCGGGATTACAAAAACATATGTGTGTGTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATAAGTCACACGCAGTCGGGATTACAAAAACATATGTGTGTGTG  1043

seq1  CGTAGATCAGAGGACAACTTACAGGAGTTGGTTCCTTCCTTCCATCATGT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGATCAGAGGACAACTTACAGGAGTTGGTTCCTTCCTTCCATCATGT  1093

seq1  AGGTCCTAGGGACTGAATTC  1113
      ||||||||||||||||||||
seq2  AGGTCCTAGGGACTGAATTC  1113

seq1: chr6_136947677_136948409
seq2: B6Ng01-228P02.g_72_808

seq1  GAATTCTTGCCCGTGAGATAATATGAGTCACATTTTGAATCACTGTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCCGTGAGATAATATGAGTCACATTTTGAATCACTGTGACA  50

seq1  AGCATCTGGTGTGTGAAACTTAGAAAGAGAAAAGGTTTGGGATAGCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGGTGTGTGAAACTTAGAAAGAGAAAAGGTTTGGGATAGCTCTG  100

seq1  CTTTAAGTCTCAGATCTTGAGTGATTCGTGCCATTATTCTTGTCCTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTCTCAGATCTTGAGTGATTCGTGCCATTATTCTTGTCCTTTGT  150

seq1  CAAGGAAGCACGCTGTGGTAGGAGCTTAGGGATGCAAAACCACTCACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGCACGCTGTGGTAGGAGCTTAGGGATGCAAAACCACTCACCTC  200

seq1  ATGTCCAGGGAGCCAGAGAATGCAGAATCCCACAACCCCCTTGGACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCAGGGAGCCAGAGAATGCAGAATCCCACAACCCCCTTGGACAGCA  250

seq1  TGTCCCGGATGAGTTAGGACTTGCCTCTAGGCTCAACCTCTTAAAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCGGATGAGTTAGGACTTGCCTCTAGGCTCAACCTCTTAAAGATCC  300

seq1  TATCAGCTTTGTACAGTGTCCCACTCAGTTCTGTCCACACGCATCTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTTTGTACAGTGTCCCACTCAGTTCTGTCCACACGCATCTGGGG  350

seq1  AGCTTTCTAAATCTGTTCCGAAGCCATAGGATATTACCTTTGCTCCGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTAAATCTGTTCCGAAGCCATAGGATATTACCTTTGCTCCGTCT  400

seq1  GTCTTCCCAAGAGGGGACTCTGCGGAGGAGTGCACAGGTCTGATGTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCAAGAGGGGACTCTGCGGAGGAGTGCACAGGTCTGATGTGAGA  450

seq1  ATGTAGAGTGACATAACTACTTCCCCCCGGAGTGTGGGAGTGTGACCGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGTGACATAACTACTTCCCCCCGGAGTGTGGGAGTGTGACCGAG  500

seq1  CACACTTCAGAAGCAACTCTGGGGAGGGTGGTCTTCTTTTGGCTCATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCAGAAGCAACTCTGGGGAGGGTGGTCTTCTTTTGGCTCATGGT  550

seq1  TTCAGAGCGATTTCAGTCCACCATGGCAGGATGGCCACTGCTCCCTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCGATTTCAGTCCACCATGGCAGGATGGCCACTGCTCCCTGTGG  600

seq1  CTCTAGAGTGC-TGGAGACAAAAGGCAAAGCATTTTACCTGCGAACAGAT  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGTGCTTGGAGACAAAAGGCAAAGCATTTTACCTGCGAACAGAT  650

seq1  AGTAAACAGAGAACACAGGCCAGAACCAGGCACAGACAGGTCAAAA--TC  697
      ||||||||||||||||||||||||| ||||||||||||||||||||  ||
seq2  AGTAAACAGAGAACACAGGCCAGAATCAGGCACAGACAGGTCAAAAATTC  700

seq1  CCCTATTCTCACCAGCCAGGC-ACCACAAGGTAAAGA  733
      |||||||||||||||||||||  ||||| ||||||||
seq2  CCCTATTCTCACCAGCCAGGCTCCCACATGGTAAAGA  737