BAC Information

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BAC

Clone NameB6Ng01-229P04
Chromosome6 (Build37)
Map Location 66,358,087 - 66,359,258
singlet/doubletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229P04.bB6Ng01-229P04.g
ACCGA042941GA042942
length1,2181,175
definitionB6Ng01-229P04.b B6Ng01-229P04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtggggtaatg
ggcaagcaacgaatcaggagctgtcacgccatatcaggtgctgcgggtta
taaaagcagtgccattttcccggttcgagatcttcctgagaagcaagcaa
taaagctcttgccacggaagattctggtttgttgcgactttcttgccggt
cgggcgggacgcaatataattcttatgccatggtaaaataaaaggaccca
ttaactaatgattggaagggtccagatccagttctattctggggaagggg
ctcggtctgtgttttttcacaagaagaagatgaagcgtgatggctgcctg
agagattaattcatcagctagacacagaccctaaatcttcttgtaagtat
cactctgatgagggctaaaaatcctcttttgcctagaagtcagttgagaa
cacaggctcccaaaaaagctgtggttttcttgcaactttcagagccagct
agcccactaagaggccagagactgagcttgagccttgctaatttacaact
aaataaagtacctggacttccccaaaagaagctttataatgttacttttc
actgcctaagatttttgtttttcaagcaggtcaatcaacaccttcagcct
aactgtggcggtgtacatccccgcccacaagagcgtgcaggtgacagcta
ctaattttcattctaaagacattccaacacattgtggattctggtctgat
ttgagattaaggtttgctatcagggctagaaaggcagaagtttcagatat
tagaaaaatgttgtttttattctgataagacaggcttagtcccttagctg
gtctccagttttccacccttgctgctattgcaaggtccccttggttcctc
agactataaagatattagagatgaggaaggtgacctccagctcctaatat
agccttaggagccacaaatttgtgatgttaatactgaaataattccttgt
agaggccttgctgaatcttgaagttgaacattctcctggagagtgccaca
gtactcaaaactgtgcatgctagtcgtgaataataacagtatggagtatc
agcgtggggtgcaagataaccactgccgaaaaaagtcacttgacgatttc
tgattctggaagaacaccgcacttagaatagaggttgatatcctaggttc
caagttactacccgtaga
gaattcatcacaaaatatatcactgcactgtgctgggaagagctctttgg
gggtactggcccagaaatgtgagaaaaaggttggaagtgtggctcattct
aaattcaggagtcctttttttttaggcttgaattcttcctgagatagtta
atagctgtgtggatttgtcaagtcccacagtcactattgttctcagtgtc
tcatttgaagaattcagttaataatcttaagtacctccaggggctcttga
gagtatcaagcaagctgtgtgccaaatgctgagcaaggaacctggacatg
aaaatgtcatgggctccttatcactgctcagtgcttatgggaggctctcc
cttccatgtatcacacagaacactccaccacatctggaaatcaatagtgc
catccctgggcacttctgaaatagttaattgaacttgagacttgattttg
ttaaaaatccccaagtactttgcatgtgttaaagtctccatctgaaattg
acattcttctgttttatgaaagccctttagtaaagaattgatattcatag
gacagcggtgagatttccttttgactcttaagccagtgatactgcagact
gtagaaaatgcaaattccagcagggacagcaaatattaagcttaaaacaa
cagcaatataattcactaactcagcaactgacttctaataacattcagta
caaatgctctaatgccttccagtcttctcctaaattttgactttattcat
tcaatgttcattccctttgaagctcagtggtgctcttttcctgatccagg
aaaggtctgttattatgattgtccatgtgcatcaagtgaaacatgaacac
agagctctagcattaagcaaacacctatgtgttcagcacatacctggtac
tttacctaggcttgagtaaagatccctaacatttgatgacaccaaatgtg
ttctacacagatctgggtgctttaacatgaagtctaatcaactggccaaa
acactcttgcctgatttttagttgctaagtctgttctagatgagagtatg
gtgttttcacattgggtacatgggcttcctggcctatggttcaggaatta
aattaagcctgtgatatatgaatatcagtagttggaagtatccaaattct
tgtataccagctaaaatgtattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66358087_66359258
seq2: B6Ng01-229P04.g_67_1241 (reverse)

seq1  GAGAATACATTTAAACTTG-ATACCAAGAAATTTGGAATCATCAAACTAC  49
      |||||||||||| | || | ||| |||| ||||||||  | || ||||||
seq2  GAGAATACATTTTAGCTGGTATA-CAAG-AATTTGGATACTTCCAACTAC  48

seq1  TAAATATCAGATATCACAGCCTAAATT--AATCCTGAACCATAAGGCAAG  97
      | |   ||| ||||||||| || ||||  | |||||||||||| | || |
seq2  TGATATTCATATATCACAGGCTTAATTTAATTCCTGAACCATAGGCCAGG  98

seq1  AAGCCCATGTA-CCAATGTTGAAAACACCATACTCTCATCTTAGAACAGA  146
      ||||||||||| |||||| ||||||||||||||||||||| |||||||||
seq2  AAGCCCATGTACCCAATG-TGAAAACACCATACTCTCATC-TAGAACAGA  146

seq1  CTTAGC-ACTAAATATCAGGC-AGAGTTGTTTTGCCAGTTGATTAAGACT  194
      |||||| |||||| ||||||| |||||  ||| ||||||||||| |||||
seq2  CTTAGCAACTAAAAATCAGGCAAGAGTGTTTTGGCCAGTTGATT-AGACT  195

seq1  TCATG-TAAAGCA-CCAGATCTGTGTAGAACACATTTGGTGTCATCAAAT  242
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAAAGCACCCAGATCTGTGTAGAACACATTTGGTGTCATCAAAT  245

seq1  GTTAGGGATCTTTACTCAAGCCTAGGTAAAGTACCAGGTATGTGCTGAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGATCTTTACTCAAGCCTAGGTAAAGTACCAGGTATGTGCTGAAC  295

seq1  ACATAGGTGTTTGCTTAATGCTAGAGCTCTGTGTTCATGTTTCACTTGAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGTGTTTGCTTAATGCTAGAGCTCTGTGTTCATGTTTCACTTGAT  345

seq1  GCACATGGACAATCATAATAACAGACCTTTCCTGGATCAGGAAAAGAGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGACAATCATAATAACAGACCTTTCCTGGATCAGGAAAAGAGCA  395

seq1  CCACTGAGCTTCAAAGGGAATGAACATTGAATGAATAAAGTCAAAATTTA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGCTTCAAAGGGAATGAACATTGAATGAATAAAGTCAAAATTTA  445

seq1  GGAGAAGACTGGAAGGCATTAGAGCATTTGTACTGAATGTTATTAGAAGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGACTGGAAGGCATTAGAGCATTTGTACTGAATGTTATTAGAAGT  495

seq1  CAGTTGCTGAGTTAGTGAATTATATTGCTGTTGTTTTAAGCTTAATATTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTGAGTTAGTGAATTATATTGCTGTTGTTTTAAGCTTAATATTT  545

seq1  GCTGTCCCTGCTGGAATTTGCATTTTCTACAGTCTGCAGTATCACTGGCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCTGCTGGAATTTGCATTTTCTACAGTCTGCAGTATCACTGGCT  595

seq1  TAAGAGTCAAAAGGAAATCTCACCGCTGTCCTATGAATATCAATTCTTTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTCAAAAGGAAATCTCACCGCTGTCCTATGAATATCAATTCTTTA  645

seq1  CTAAAGGGCTTTCATAAAACAGAAGAATGTCAATTTCAGATGGAGACTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGGCTTTCATAAAACAGAAGAATGTCAATTTCAGATGGAGACTTT  695

seq1  AACACATGCAAAGTACTTGGGGATTTTTAACAAAATCAAGTCTCAAGTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGCAAAGTACTTGGGGATTTTTAACAAAATCAAGTCTCAAGTTC  745

seq1  AATTAACTATTTCAGAAGTGCCCAGGGATGGCACTATTGATTTCCAGATG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTATTTCAGAAGTGCCCAGGGATGGCACTATTGATTTCCAGATG  795

seq1  TGGTGGAGTGTTCTGTGTGATACATGGAAGGGAGAGCCTCCCATAAGCAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGTGTTCTGTGTGATACATGGAAGGGAGAGCCTCCCATAAGCAC  845

seq1  TGAGCAGTGATAAGGAGCCCATGACATTTTCATGTCCAGGTTCCTTGCTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGTGATAAGGAGCCCATGACATTTTCATGTCCAGGTTCCTTGCTC  895

seq1  AGCATTTGGCACACAGCTTGCTTGATACTCTCAAGAGCCCCTGGAGGTAC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGGCACACAGCTTGCTTGATACTCTCAAGAGCCCCTGGAGGTAC  945

seq1  TTAAGATTATTAACTGAATTCTTCAAATGAGACACTGAGAACAATAGTGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGATTATTAACTGAATTCTTCAAATGAGACACTGAGAACAATAGTGA  995

seq1  CTGTGGGACTTGACAAATCCACACAGCTATTAACTATCTCAGGAAGAATT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACTTGACAAATCCACACAGCTATTAACTATCTCAGGAAGAATT  1045

seq1  CAAGCCTAAAAAAAAAGGACTCCTGAATTTAGAATGAGCCACACTTCCAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTAAAAAAAAAGGACTCCTGAATTTAGAATGAGCCACACTTCCAA  1095

seq1  CCTTTTTCTCACATTTCTGGGCCAGTACCCCCAAAGAGCTCTTCCCAGCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTCACATTTCTGGGCCAGTACCCCCAAAGAGCTCTTCCCAGCA  1145

seq1  CAGTGCAGTGATATATTTTGTGATGAATTC  1172
      ||||||||||||||||||||||||||||||
seq2  CAGTGCAGTGATATATTTTGTGATGAATTC  1175