BAC Information

Click to search

BAC

Clone NameB6Ng01-231G24
Chromosome6 (Build37)
Map Location 46,261,445 - 46,395,304
singlet/doubletdoublet
Overlap geneCntnap2
Upstream genenone
Downstream geneRbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231G24.bB6Ng01-231G24.g
ACCGA044041GA044042
length1,1081,124
definitionB6Ng01-231G24.b B6Ng01-231G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,261,445 - 46,262,553)(46,394,179 - 46,395,304)
sequence
gaattctatcccaaagcctccaaccaggcttctataccactgtgaatatt
tgggttttcatgcccatggcatagtaaacttgtgttagtttatattgctt
agtttgtaatgatttgttaaagcagccataggaaaagattaccatgccct
gaaaaagatcttgtggtcttcatgaaaatatccaggtccacagagatgct
aagggcagaatgcaagtggttatatcataccactgatattcactgttgct
tctatgacctatgctttttaagcaaaaaggtgttttacctgtgcaaatgt
atgtctgtaccttctaagccatctgtgttaggacagggagttcttctcta
agcctgtgcttccttctctccccattgcaacctaaatctgtgattggaaa
accgaatgcatgaataaaagaagctttgctcctgttgataactgatttaa
ttttcttcttgatttagattttggactcaatgttttttgaaaaactgctt
agaatgtaccaatttcacatctatctcttaggagagtccaggtgtttgtt
atttgcataaatatcctttttcatttttaattttattccttatatgagtt
tcatttatgagagaattggtttattgaaagatattatagtttggattaga
aaagtctccaaaagttgtgcagtgagggcttggtccaagctaaagttgct
gggaagattgggacatttaggagatatgcttagagaaagttatgctattg
gaaccatacattctgattctctattgaggccatggctcctctctttctct
attctgctcccagatcctttcagtgtatggacttgctcacccacatggtc
actaccatgatgtttgttttccttcaaacccaagcaatgtacctaatcat
catgaatctgaaaccatgagcacagaactttcttatttgtaagtgtatta
tctcagtcattttgtcacagcagcagaaattaactagtcacaatgatgac
aaatcttagttaattcccatgatgtgtatgaaggcaacaggaaatactgt
taattcttgttcagccatcacctatattgttgggaacttgtcataatccc
tcaaaatg

gaattctttcagtagtaaagccctataggaaatttattctttcagtaaaa
tacttctcagaatatgttctactaactgagctgccttgtctggcctcagt
agtaaaggaagtggctagcatcacagagacttgtgctaggatggagggga
ttcccccaggggtcccactagctcagaggagaagagggaggggtgatcag
gagggagtcagtgagcagaatggaaagtgaataaatataaataaacaaaa
ttattaaactaaaaaaatacttcccaggttttgtagacactaaggggcca
atgatatttcttttgtggttttcaacatcttttgtctgtgtattaacata
tagagagcatgttttataaaatcaaatgattcaattgccatgtgttagat
ttgaaatgtacagaattttgggccctccaaaaacaccaatcttgcttata
gtttcttgctgcaaatataaggcatggaaacagcagactgtttgagattt
gaactttttgaagcagagattacattttggaaaagtgtaaccatacaata
tgatggatagccgacataatgcaatctctcaatgtcacctgcaataagaa
tgtgcagtctatgtgtgccagtgtgaagctgctccagatgaagaattgag
tctacaaagctaatgtatggcaccacaactctcctgatgagagtgggctg
gctgtcagaggcattcacttgctcagtacttgaagcagttacataaattc
tggaaaagtatcagatctttgaacaaagagtttcaacgaagtttgaagct
tataataaactaagaaaaattctttgtagttacccctttctgctaaatct
ctgttcatcttatacataataagaaaataatttgcaaagtcaactcaata
gcttgtattattaaataaacagcagagctttgctgtgttttctgtaatct
atcagaaatatttagttagtgaaacctttgtgttcatatctctgttctgc
tatactgtgtcctctcacagaactcactcttaactcagtgtggttcatgc
caaggtatttttatatatttgtgactaatggagaaggatgttgttcctta
atttctttcctctagccctgttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_46261445_46262553
seq2: B6Ng01-231G24.b_43_1150

seq1  GAATTCTATCCCAAAGCCTCCAACCAGGCTTCTATACCACTGTGAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCCCAAAGCCTCCAACCAGGCTTCTATACCACTGTGAATATT  50

seq1  TGGGTTTTCATGCCCATGGCATAGTAAACTTGTGTTAGTTTATATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTCATGCCCATGGCATAGTAAACTTGTGTTAGTTTATATTGCTT  100

seq1  AGTTTGTAATGATTTGTTAAAGCAGCCATAGGAAAAGATTACCATGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTAATGATTTGTTAAAGCAGCCATAGGAAAAGATTACCATGCCCT  150

seq1  GAAAAAGATCTTGTGGTCTTCATGAAAATATCCAGGTCCACAGAGATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATCTTGTGGTCTTCATGAAAATATCCAGGTCCACAGAGATGCT  200

seq1  AAGGGCAGAATGCAAGTGGTTATATCATACCACTGATATTCACTGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGAATGCAAGTGGTTATATCATACCACTGATATTCACTGTTGCT  250

seq1  TCTATGACCTATGCTTTTTAAGCAAAAAGGTGTTTTACCTGTGCAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACCTATGCTTTTTAAGCAAAAAGGTGTTTTACCTGTGCAAATGT  300

seq1  ATGTCTGTACCTTCTAAGCCATCTGTGTTAGGACAGGGAGTTCTTCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTACCTTCTAAGCCATCTGTGTTAGGACAGGGAGTTCTTCTCTA  350

seq1  AGCCTGTGCTTCCTTCTCTCCCCATTGCAACCTAAATCTGTGATTGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTGCTTCCTTCTCTCCCCATTGCAACCTAAATCTGTGATTGGAAA  400

seq1  ACCGAATGCATGAATAAAAGAAGCTTTGCTCCTGTTGATAACTGATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAATGCATGAATAAAAGAAGCTTTGCTCCTGTTGATAACTGATTTAA  450

seq1  TTTTCTTCTTGATTTAGATTTTGGACTCAATGTTTTTTGAAAAACTGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTTGATTTAGATTTTGGACTCAATGTTTTTTGAAAAACTGCTT  500

seq1  AGAATGTACCAATTTCACATCTATCTCTTAGGAGAGTCCAGGTGTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTACCAATTTCACATCTATCTCTTAGGAGAGTCCAGGTGTTTGTT  550

seq1  ATTTGCATAAATATCCTTTTTCATTTTTAATTTTATTCCTTATATGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCATAAATATCCTTTTTCATTTTTAATTTTATTCCTTATATGAGTT  600

seq1  TCATTTATGAGAGAATTGGTTTATTGAAAGATATTATAGTTTGGATTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATGAGAGAATTGGTTTATTGAAAGATATTATAGTTTGGATTAGA  650

seq1  AAAGTCTCCAAAAGTTGTGCAGTGAGGGCTTGGTCCAAGCTAAAGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCCAAAAGTTGTGCAGTGAGGGCTTGGTCCAAGCTAAAGTTGCT  700

seq1  GGGAAGATTGGGACATTTAGGAGATATGCTTAGAGAAAGTTATGCTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATTGGGACATTTAGGAGATATGCTTAGAGAAAGTTATGCTATTG  750

seq1  GAACCATACATTCTGATTCTCTATTGAGGCCATGGCTCCTCTCTTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATACATTCTGATTCTCTATTGAGGCCATGGCTCCTCTCTTTCTCT  800

seq1  ATTCTGCTCCCAGATCCTTTCAGGTGTATGGACTTGCTCACCCACATGGT  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTCTGCTCCCAGATCCTTTCA-GTGTATGGACTTGCTCACCCACATGGT  849

seq1  CACTACCATGATGTTTGTTTTCCTTCAAACCCAAAGCAATGTACCTAATC  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CACTACCATGATGTTTGTTTTCCTTCAAACCC-AAGCAATGTACCTAATC  898

seq1  ATCATGAATCTGAAACCATGAGCACAGAACTTTCTTATTTGTAAGTGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGAATCTGAAACCATGAGCACAGAACTTTCTTATTTGTAAGTGTAT  948

seq1  TATCTCAGTCATTTTGTCACAGCAGCAGAAAATTAACTAAGTCACAATGA  1000
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  TATCTCAGTCATTTTGTCACAGCAGCAG-AAATTAACT-AGTCACAATGA  996

seq1  TGACAAATCTTAG-TAAATCCCATGATGTGTATGAAAGGCAACAGGAAAT  1049
      ||||||||||||| ||| |||||||||||||||| |||||||||||||||
seq2  TGACAAATCTTAGTTAATTCCCATGATGTGTATG-AAGGCAACAGGAAAT  1045

seq1  ACTGTTACATTC-TGTTCAG-CATCAACTATATTG-TGGGAACTTGTCAT  1096
      ||||||| |||| ||||||| ||||| |||||||| ||||||||||||||
seq2  ACTGTTA-ATTCTTGTTCAGCCATCACCTATATTGTTGGGAACTTGTCAT  1094

seq1  AAT-CCTCAAAATG  1109
      ||| ||||||||||
seq2  AATCCCTCAAAATG  1108


seq1: chr6_46394179_46395304
seq2: B6Ng01-231G24.g_65_1188 (reverse)

seq1  TAAACA-GGCT-GA-GAAAGAAATTAGGGAAACAACATCCTTCT-CAATA  46
      |||||| |||| || ||||||||||| || |||||||||||||| || ||
seq2  TAAACAGGGCTAGAGGAAAGAAATTAAGG-AACAACATCCTTCTCCATTA  49

seq1  GTCACAAATAATAT-AAAATACCTTGGCATGAACCACAACTGAGTTTAAG  95
      ||||||||| |||| |||||||||||||||||||||| |||||| |||||
seq2  GTCACAAAT-ATATAAAAATACCTTGGCATGAACCAC-ACTGAG-TTAAG  96

seq1  AGTGAAGTTCTGTGAGAGGACACAGTATAGGCAGAACAGAAGATATGAAC  145
      |||| |||||||||||||||||||||||| ||||||||| ||||||||||
seq2  AGTG-AGTTCTGTGAGAGGACACAGTATA-GCAGAACAG-AGATATGAAC  143

seq1  ACAAAGGTTTCACTAACTAAATATTTCTGATAGATTACAGAAAACACAGC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTTTCACTAACTAAATATTTCTGATAGATTACAGAAAACACAGC  193

seq1  AAAGCTCTGCTGTTTATTTAATAATACAAGCTATTGAGTTTGACTTTGC-  244
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  AAAGCTCTGCTGTTTATTTAATAATACAAGCTATTGAG-TTGACTTTGCA  242

seq1  AATTATTTTCTTATTATGTATAAGATGAACAGAGATTTAGCAGAAAGGGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTCTTATTATGTATAAGATGAACAGAGATTTAGCAGAAAGGGG  292

seq1  TAACTACAAAGAATTTTTCTTAGTTTATTATAAGCTTCAAACTTCGTTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTACAAAGAATTTTTCTTAGTTTATTATAAGCTTCAAACTTCGTTGA  342

seq1  AACTCTTTGTTCAAAGATCTGATACTTTTCCAGAATTTATGTAACTGCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTGTTCAAAGATCTGATACTTTTCCAGAATTTATGTAACTGCTT  392

seq1  CAAGTACTGAGCAAGTGAATGCCTCTGACAGCCAGCCCACTCTCATCAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTGAGCAAGTGAATGCCTCTGACAGCCAGCCCACTCTCATCAGG  442

seq1  AGAGTTGTGGTGCCATACATTAGCTTTGTAGACTCAATTCTTCATCTGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTGGTGCCATACATTAGCTTTGTAGACTCAATTCTTCATCTGGA  492

seq1  GCAGCTTCACACTGGCACACATAGACTGCACATTCTTATTGCAGGTGACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTCACACTGGCACACATAGACTGCACATTCTTATTGCAGGTGACA  542

seq1  TTGAGAGATTGCATTATGTCGGCTATCCATCATATTGTATGGTTACACTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATTGCATTATGTCGGCTATCCATCATATTGTATGGTTACACTT  592

seq1  TTCCAAAATGTAATCTCTGCTTCAAAAAGTTCAAATCTCAAACAGTCTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATGTAATCTCTGCTTCAAAAAGTTCAAATCTCAAACAGTCTGC  642

seq1  TGTTTCCATGCCTTATATTTGCAGCAAGAAACTATAAGCAAGATTGGTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCATGCCTTATATTTGCAGCAAGAAACTATAAGCAAGATTGGTGT  692

seq1  TTTTGGAGGGCCCAAAATTCTGTACATTTCAAATCTAACACATGGCAATT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGGCCCAAAATTCTGTACATTTCAAATCTAACACATGGCAATT  742

seq1  GAATCATTTGATTTTATAAAACATGCTCTCTATATGTTAATACACAGACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTGATTTTATAAAACATGCTCTCTATATGTTAATACACAGACA  792

seq1  AAAGATGTTGAAAACCACAAAAGAAATATCATTGGCCCCTTAGTGTCTAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTGAAAACCACAAAAGAAATATCATTGGCCCCTTAGTGTCTAC  842

seq1  AAAACCTGGGAAGTATTTTTTTAGTTTAATAATTTTGTTTATTTATATTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGGGAAGTATTTTTTTAGTTTAATAATTTTGTTTATTTATATTT  892

seq1  ATTCACTTTCCATTCTGCTCACTGACTCCCTCCTGATCACCCCTCCCTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTTTCCATTCTGCTCACTGACTCCCTCCTGATCACCCCTCCCTCT  942

seq1  TCTCCTCTGAGCTAGTGGGACCCCTGGGGGAATCCCCTCCATCCTAGCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTGAGCTAGTGGGACCCCTGGGGGAATCCCCTCCATCCTAGCAC  992

seq1  AAGTCTCTGTGATGCTAGCCACTTCCTTTACTACTGAGGCCAGACAAGGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTGTGATGCTAGCCACTTCCTTTACTACTGAGGCCAGACAAGGC  1042

seq1  AGCTCAGTTAGTAGAACATATTCTGAGAAGTATTTTACTGAAAGAATAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTTAGTAGAACATATTCTGAGAAGTATTTTACTGAAAGAATAAA  1092

seq1  TTTCCTATAGGGCTTTACTACTGAAAGAATTC  1126
      ||||||||||||||||||||||||||||||||
seq2  TTTCCTATAGGGCTTTACTACTGAAAGAATTC  1124


| Home | SequenceCutter | Blast | Download |