BAC Information

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BAC

Clone NameB6Ng01-231J18
Chromosome6 (Build37)
Map Location 69,936,290 - 69,937,461
singlet/doubletsinglet
Overlap geneIgk
Upstream geneGm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410
Downstream geneIgkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia, Eif2ak3, 1700011F03Rik, LOC232077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231J18.bB6Ng01-231J18.g
ACCGA044166GA044167
length4851,173
definitionB6Ng01-231J18.b B6Ng01-231J18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ccactggtgcaatagttttatgaacattagagaaataaccaaatatatat
tgtatttgatttaaggcccattccatgatgccaagagcatttgactaagt
agattatagtggttagaggaaaattcttttactattaatttaataaatga
gtacagtaataaaaagaaccttaataatgtatttctatacacatgatcag
tgtaatattcaaatttcatcagggaaacttcttaaaatagatggttatta
acacagagacttacaaatgggtaacatggttcagacagtgggagattttt
ggggggtatttatttcatttacatttccaatgctatcacaaaagtccccc
acacactcccccacccacccactcccacttcttggccttggccctgtact
gtggcatataaagtttgcatgaccaatgggcctctctttccactgatggc
caactaggccatcttttaattcatatgcagctaga
gaattcacttcttaaactcattgggtgtttgatttctcatgagcacaaga
taaattagctaatagtacacatattacaaaagtgaaaatcactaccactt
cttcgatattcttttgtgtcagacacaaaattcattaaaaacattcagtg
gaaatatgaccactgtcacttcagctttcattgactttagcatcaatttc
aaccttgctggcagagtgttgtgatctccaggtatcaggaccgtgttttt
ctcaataaaccagttattctgtttttggtcagcagtctcactcccaccta
cactcagctccatatttatgtctaaaattgcttcttagagcatgcaaagg
ctttctccatccataaacgcaagcattgcttctcagaatacagtcctgtt
cccatattttgttcatactttactgtcccagatactcttttaaaactaag
ggtaatcaattaataaaatacaatctgactatattttcctactccttttt
ctctctctagaccttcctaacccagattttgacctcttttttcaaaaaaa
aatatagttacatatatatgtgagggagagagaatataggtataaatgca
acttgcttcatatatttagcattacttgtaagtatatatttttaaagatg
accttagggtattgggtagctaatggggaagggtcagtttatatcatatc
ttctgttctattgccctgttattcttgactctttgagggttaaatgctac
cttccataatgatgagtttctatgttaaagtaagaaaaaatcaattttag
gggaaaatttgaacttagtaaaaataattatgtaatatgaaatttaatgg
aactctgggcaaaagcagacaaagtagttttggtgtgtatgtatgtgtgt
tgacacaaaatcttagctttgaagcaaagggtacgtagctcctaaatgct
aggaaaataacaaaggtgatttatatgcactcatacattgttttccaagt
tggttgttatacttggtctctttggtatgtacttagaaaccaataacact
atctaatataatctcaaatacatattgaaatagagtataagatggagatg
taaaataatgactatgtcttatttattcgaatgcaatgggaatattccat
gatctataactaatgacatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_69936290_69937461
seq2: B6Ng01-231J18.g_70_1242 (reverse)

seq1  ATATATG-CATATGTTATTAGATCATGGAATATATCCA-TGCCATCGAAT  48
      ||||||| |||  |||| |||||||||||||||  ||| |||  ||||||
seq2  ATATATGTCATTAGTTA-TAGATCATGGAATATTCCCATTGCATTCGAAT  49

seq1  AAAATAAGGACATAGTCAATGTATTTACATCTCCATCTTATACTCTGTTT  98
       |||||| |||||||||| | | |||||||||||||||||||||||  ||
seq2  -AAATAA-GACATAGTCATTAT-TTTACATCTCCATCTTATACTCT-ATT  95

seq1  TCAATATGTATTTGAGATTATATTAGATAGTG-TATTGGTTTCTAAGTAC  147
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAATATGTATTTGAGATTATATTAGATAGTGTTATTGGTTTCTAAGTAC  145

seq1  ATACCAAAGAGACCAAGTATAAC-ACCAACTTGGAAAACAATGTATGAGT  196
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATACCAAAGAGACCAAGTATAACAACCAACTTGGAAAACAATGTATGAGT  195

seq1  GCATATAAATCACCTTTGTTATTTTCCTAGCATTTAGGAGCTACGTACCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAAATCACCTTTGTTATTTTCCTAGCATTTAGGAGCTACGTACCC  245

seq1  TTTGCTTCAAAGCT-AGATTTTGTGTCAACACACATACATACACACCAAA  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCAAAGCTAAGATTTTGTGTCAACACACATACATACACACCAAA  295

seq1  ACTACTTTGTCTGCTTTTGCCCAGAGTTCCATTAAATTTCATATTACATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTGTCTGCTTTTGCCCAGAGTTCCATTAAATTTCATATTACATA  345

seq1  ATTATTTTTACTAAGTTCAAATTTTCCCCTAAAATTGA-TTTTTCTTACT  394
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTATTTTTACTAAGTTCAAATTTTCCCCTAAAATTGATTTTTTCTTACT  395

seq1  TTAACATAGAAACTCATCATTATGGAAGGTAGCATTTAACCCTCAAAGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATAGAAACTCATCATTATGGAAGGTAGCATTTAACCCTCAAAGAG  445

seq1  TCAAGAATAACAGGGCAATAGAACAGAAGATATGATATAAACTGACCCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATAACAGGGCAATAGAACAGAAGATATGATATAAACTGACCCTT  495

seq1  CCCCATTAGCTACCCAATACCCTAAGGTCATCTTTAAAAATATATACTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTAGCTACCCAATACCCTAAGGTCATCTTTAAAAATATATACTTA  545

seq1  CAAGTAATGCTAAATATATGAAGCAAGTTGCATTTATACCTATATTCTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATGCTAAATATATGAAGCAAGTTGCATTTATACCTATATTCTCT  595

seq1  CTCCCTCACATATATATGTAACTATATTTTTTTTTGAAAAAAGAGGTCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCACATATATATGTAACTATATTTTTTTTTGAAAAAAGAGGTCAA  645

seq1  AATCTGGGTTAGGAAGGTCTAGAGAGAGAAAAAGGAGTAGGAAAATATAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGTTAGGAAGGTCTAGAGAGAGAAAAAGGAGTAGGAAAATATAG  695

seq1  TCAGATTGTATTTTATTAATTGATTACCCTTAGTTTTAAAAGAGTATCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTGTATTTTATTAATTGATTACCCTTAGTTTTAAAAGAGTATCTG  745

seq1  GGACAGTAAAGTATGAACAAAATATGGGAACAGGACTGTATTCTGAGAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTAAAGTATGAACAAAATATGGGAACAGGACTGTATTCTGAGAAG  795

seq1  CAATGCTTGCGTTTATGGATGGAGAAAGCCTTTGCATGCTCTAAGAAGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTGCGTTTATGGATGGAGAAAGCCTTTGCATGCTCTAAGAAGCA  845

seq1  ATTTTAGACATAAATATGGAGCTGAGTGTAGGTGGGAGTGAGACTGCTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGACATAAATATGGAGCTGAGTGTAGGTGGGAGTGAGACTGCTGA  895

seq1  CCAAAAACAGAATAACTGGTTTATTGAGAAAAACACGGTCCTGATACCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACAGAATAACTGGTTTATTGAGAAAAACACGGTCCTGATACCTG  945

seq1  GAGATCACAACACTCTGCCAGCAAGGTTGAAATTGATGCTAAAGTCAATG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCACAACACTCTGCCAGCAAGGTTGAAATTGATGCTAAAGTCAATG  995

seq1  AAAGCTGAAGTGACAGTGGTCATATTTCCACTGAATGTTTTTAATGAATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGAAGTGACAGTGGTCATATTTCCACTGAATGTTTTTAATGAATT  1045

seq1  TTGTGTCTGACACAAAAGAATATCGAAGAAGTGGTAGTGATTTTCACTTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGACACAAAAGAATATCGAAGAAGTGGTAGTGATTTTCACTTT  1095

seq1  TGTAATATGTGTACTATTAGCTAATTTATCTTGTGCTCATGAGAAATCAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATGTGTACTATTAGCTAATTTATCTTGTGCTCATGAGAAATCAA  1145

seq1  ACACCCAATGAGTTTAAGAAGTGAATTC  1172
      ||||||||||||||||||||||||||||
seq2  ACACCCAATGAGTTTAAGAAGTGAATTC  1173