BAC Information

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BAC

Clone NameB6Ng01-231K12
Chromosome6 (Build37)
Map Location 143,954,502 - 144,079,149
singlet/doubletdoublet
Overlap geneSox5
Upstream gene5730419I09Rik, Etnk1, D6Ertd474e
Downstream gene4933425H06Rik, EG665149, Bcat1, Lrmp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231K12.bB6Ng01-231K12.g
ACCGA044199GA044200
length1,0591,129
definitionB6Ng01-231K12.b B6Ng01-231K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,078,079 - 144,079,149)(143,954,502 - 143,955,632)
sequence
gaattcatagaattaggtggttctcgctgaggagcacactggttaaaagc
acaggaggggatggagagatatagactcacacaggtctcttacttaacta
gagcctgagcttaaactgcatttcaacatatgaaagcagtggtaatagtt
cctacatcctagctgtttggagaccagagaaattgccccctaaaagcccg
tgcagccaggcaagttgatgtttcatagggtgattctgccatcttcctca
gcatcttctgtggttccagtgttcgtgaggatggattgtgctaggacatt
gtaatctaagcctcttcaaggaatccctagcccaactgcatcagagcagt
gtagatggggccctgggaagagctctgaacatacagagaggctggaggtt
actgaagcagtcagcttggagccgacacccaagggaaatgttgaaagctg
tacactcctgatcacttccaactcagttctccatcgcttgtgaaagcctg
cggtcggtcattggtcggagcttgatcccctgcacagacctgccattcac
acccgctcacacgcacaaggctccattcacttccaggaaatcggtggctc
tgcggaactgggtaagaatttggcccccagcgagagcgatctgaatgaat
gaatttggagttggcaagaacgtgtaggcaagtgccacatttcctcagga
tctccctgcttcaagaccccgtccgggtagcatggaaattctgtgggaga
agtcagagcatcccagcgagatcctctgtaagtgtgttccagtctccgtc
gatcactctggtcatcccgaaagaacagggagggaaaggagaaatgaaac
tctgctctccacaaacacaaggccaatgatccttttaatgaagttttagc
tagttaaatgccggtgtgaatatgtgacttcttcacttttcaggatacct
tttaaaattgattccaaagtcatgttgtggtttttttgagccaagtctac
tgtgtgaacctggctgacctcaagtctgtcagtcttggccttggtggtac
atgtatcca

gaattccacgcaccatgtatcagtggcggagcacgagacatctgtgaacg
gagcccccatgtcattttctcaaaagacgtactcagccccgaagaataga
aagatgagtcgctccacaagtgagggctgtttcgctttctattatccgat
ggtgattacctccaggaacacagctcataaaatgtaggcttagcttaaat
acctactggaatcggacaaaatcttcataaaccgaaacggattgaaagcg
ttcttgtagagggctttagtgtttcttgtaaagcacactgaagttcaacg
ttagagggatcctttaagttgtagagagaatagaaaacgggaggaaaaca
aagttttggcaaatcgcgctttacctcaacgcagctcaagtggggttggg
atgtttaaggctggctgatcagcctagattcagtccagccaatggtaaag
ctaattctgagagagcaaaaaagacatcaaaagagaacagtgcgtattac
taatcaaggaagagaaaaaggagtaggttacggtgagtaaggtcagattc
ctaacgtactgatgtggccttggacctctgtctctattgtctttctaccc
atcaaggacagatacttaggttcctcactgcctccctctcagggaacagc
atcccttactatcatgtttatgaaatccatctcagggtcacatgaaggaa
gagttatattaaagcaggtgtgcatgcttgcatgtaagaccataacagaa
acgccttgctaaggcagcccctgtggacaccagcagaatatcaaacagat
ggtgcggggtgacatccctctggcatttagtatggcctcacacccctgcc
atggaataaaatgtaatggtggtcccggcagagagaaagggaccaataac
aatgaataagtcagagttctgggttgaggtgaatccctgctcctccttca
agggaacggtgctacaaacataagagaagatgtaccaacatcccttgtta
ttccaaagggttccacggctagtgggggaaggttgttgctgaccagcaag
tgcttcctagtatttttagcagggagctagactatctgctgtgcctcctg
gtactattcagaaaaatgaatcatacgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144078079_144079149
seq2: B6Ng01-231K12.b_49_1107 (reverse)

seq1  TGGATACATGTACCACCAAGGCCAAGAACTGACAGGACTTTGAGGTCAGC  50
      |||||||||||||||||||||||||| ||||||| ||| |||||||||||
seq2  TGGATACATGTACCACCAAGGCCAAG-ACTGACA-GAC-TTGAGGTCAGC  47

seq1  CAGGTTCACACAGTAAGACTTGGCCTCAAAAAAACCACAAACATGACTTT  100
      |||||||||||||| |||||||| |||||||||||||| |||||||| ||
seq2  CAGGTTCACACAGT-AGACTTGG-CTCAAAAAAACCAC-AACATGAC-TT  93

seq1  TGAAATCAATTTTTAAAAAGGTTATCTGAAAAAGTGAAGAAGTCACATAT  150
      || ||||||||||  |||||| ||||   |||||||||||||||||||||
seq2  TGGAATCAATTTT--AAAAGG-TATCCTGAAAAGTGAAGAAGTCACATAT  140

seq1  TCACACCGGCATTTTAACTAGCTAAAACTTCATTTAAAGGATCATTGGCC  200
      ||||||||||| |||||||||||||||||||||| |||||||||||||||
seq2  TCACACCGGCA-TTTAACTAGCTAAAACTTCATTAAAAGGATCATTGGCC  189

seq1  TTGTGTTTTGTGGAGAGCAGAGTTTCATTTCTCCTTTCCCTCCCTGTTCT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTG-TTTGTGGAGAGCAGAGTTTCATTTCTCCTTTCCCTCCCTGTTCT  238

seq1  TTCGGGATGACCAGAGTGATCGACGGAGACTGGAACACACTTACAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGATGACCAGAGTGATCGACGGAGACTGGAACACACTTACAGAGGA  288

seq1  TCTCGCTGGGATGCTCTGACTTCTCCCACAGAATTTCCATGCTACCCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTGGGATGCTCTGACTTCTCCCACAGAATTTCCATGCTACCCGGA  338

seq1  CGGGGTCTTGAAGCAGGGAGATCCTGAGGAAATGTGGCACTTGCCTACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCTTGAAGCAGGGAGATCCTGAGGAAATGTGGCACTTGCCTACAC  388

seq1  GTTCTTGCCAACTCCAAATTCATTCATTCAGATCGCTCTCGCTGGGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGCCAACTCCAAATTCATTCATTCAGATCGCTCTCGCTGGGGGCC  438

seq1  AAATTCTTACCCAGTTCCGCAGAGCCACCGATTTCCTGGAAGTGAATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTACCCAGTTCCGCAGAGCCACCGATTTCCTGGAAGTGAATGGA  488

seq1  GCCTTGTGCGTGTGAGCGGGTGTGAATGGCAGGTCTGTGCAGGGGATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGCGTGTGAGCGGGTGTGAATGGCAGGTCTGTGCAGGGGATCAA  538

seq1  GCTCCGACCAATGACCGACCGCAGGCTTTCACAAGCGATGGAGAACTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGACCAATGACCGACCGCAGGCTTTCACAAGCGATGGAGAACTGAG  588

seq1  TTGGAAGTGATCAGGAGTGTACAGCTTTCAACATTTCCCTTGGGTGTCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTGATCAGGAGTGTACAGCTTTCAACATTTCCCTTGGGTGTCGG  638

seq1  CTCCAAGCTGACTGCTTCAGTAACCTCCAGCCTCTCTGTATGTTCAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTGACTGCTTCAGTAACCTCCAGCCTCTCTGTATGTTCAGAGC  688

seq1  TCTTCCCAGGGCCCCATCTACACTGCTCTGATGCAGTTGGGCTAGGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAGGGCCCCATCTACACTGCTCTGATGCAGTTGGGCTAGGGATT  738

seq1  CCTTGAAGAGGCTTAGATTACAATGTCCTAGCACAATCCATCCTCACGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAGAGGCTTAGATTACAATGTCCTAGCACAATCCATCCTCACGAA  788

seq1  CACTGGAACCACAGAAGATGCTGAGGAAGATGGCAGAATCACCCTATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAACCACAGAAGATGCTGAGGAAGATGGCAGAATCACCCTATGAA  838

seq1  ACATCAACTTGCCTGGCTGCACGGGCTTTTAGGGGGCAATTTCTCTGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACTTGCCTGGCTGCACGGGCTTTTAGGGGGCAATTTCTCTGGTC  888

seq1  TCCAAACAGCTAGGATGTAGGAACTATTACCACTGCTTTCATATGTTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACAGCTAGGATGTAGGAACTATTACCACTGCTTTCATATGTTGAA  938

seq1  ATGCAGTTTAAGCTCAGGCTCTAGTTAAGTAAGAGACCTGTGTGAGTCTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTTAAGCTCAGGCTCTAGTTAAGTAAGAGACCTGTGTGAGTCTA  988

seq1  TATCTCTCCATCCCCTCCTGTGCTTTTAACCAGTGTGCTCCTCAGCGAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTCCATCCCCTCCTGTGCTTTTAACCAGTGTGCTCCTCAGCGAGA  1038

seq1  ACCACCTAATTCTATGAATTC  1071
      |||||||||||||||||||||
seq2  ACCACCTAATTCTATGAATTC  1059


seq1: chr6_143954502_143955632
seq2: B6Ng01-231K12.g_68_1196

seq1  GAATTCCACGCA-GATGTATCAGTGGCGGAGCACGAGACATCTGTGAACG  49
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGCACCATGTATCAGTGGCGGAGCACGAGACATCTGTGAACG  50

seq1  GAGCCCCCATGTCATTTTCTCAAAAGACGTACTCAGCCCCGAAGAATAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCCATGTCATTTTCTCAAAAGACGTACTCAGCCCCGAAGAATAGA  100

seq1  AAGATGAGTCGCTCCACAAGTGAGGGCTGTTTCGCTTTCTATTATCCGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAGTCGCTCCACAAGTGAGGGCTGTTTCGCTTTCTATTATCCGAT  150

seq1  GGTGATTACCTCCAGGAACACAGCTCATAAAATGTAGGCTTAGCTTAAAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTACCTCCAGGAACACAGCTCATAAAATGTAGGCTTAGCTTAAAT  200

seq1  ACCTACTGGAATCGGACAAAATCTTCATAAACCGAAACGGATTGAAAGCG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGGAATCGGACAAAATCTTCATAAACCGAAACGGATTGAAAGCG  250

seq1  TTCTTGTAGAGGGCTTTAGTGTTTCTTGTAAAGCACACTGAAGTTCAACG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTAGAGGGCTTTAGTGTTTCTTGTAAAGCACACTGAAGTTCAACG  300

seq1  TTAGAGGGATCCTTTAAGTTGTAGAGAGAATAGAAAACGGGAGGAAAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGGATCCTTTAAGTTGTAGAGAGAATAGAAAACGGGAGGAAAACA  350

seq1  AAGTTTTGGCAAATCGCGCTTTACCTCAACGCAGCTCAAGTGGGGTTGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGGCAAATCGCGCTTTACCTCAACGCAGCTCAAGTGGGGTTGGG  400

seq1  ATGTTTAAGGCTGGCTGATCAGCCTAGATTCAGTCCAGCCAATGGTAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAGGCTGGCTGATCAGCCTAGATTCAGTCCAGCCAATGGTAAAG  450

seq1  CTAATTCTGAGAGAGCAAAAAAGACATCAAAAGAGAACAGTGCGTATTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCTGAGAGAGCAAAAAAGACATCAAAAGAGAACAGTGCGTATTAC  500

seq1  TAATCAAGGAAGAGAAAAAGGAGTAGGTTACGGTGAGTAAGGTCAGATTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGGAAGAGAAAAAGGAGTAGGTTACGGTGAGTAAGGTCAGATTC  550

seq1  CTAACGTACTGATGTGGCCTTGGACCTCTGTCTCTATTGTCTTTCTACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACGTACTGATGTGGCCTTGGACCTCTGTCTCTATTGTCTTTCTACCC  600

seq1  ATCAAGGACAGATACTTAGGTTCCTCACTGCCTCCCTCTCAGGGAACAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGACAGATACTTAGGTTCCTCACTGCCTCCCTCTCAGGGAACAGC  650

seq1  ATCCCTTACTATCATGTTTATGAAATCCATCTCAGGGTCACATGAAGGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTACTATCATGTTTATGAAATCCATCTCAGGGTCACATGAAGGAA  700

seq1  GAGTTATATTAAAGCAGGTGTGCATGCTTGCATGTAAGACCATAACAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTATATTAAAGCAGGTGTGCATGCTTGCATGTAAGACCATAACAGAA  750

seq1  ACGCCTTGCTAAGGCAGCCCCTGTGGACACCAGCAGAATATCAAACAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTGCTAAGGCAGCCCCTGTGGACACCAGCAGAATATCAAACAGAT  800

seq1  GGTGCGGGGTGACATCCCTCTGGCATTTAGTATGGCCTCACACCCCTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGGGGTGACATCCCTCTGGCATTTAGTATGGCCTCACACCCCTGCC  850

seq1  ATGGAATAAAATGTAATGGTGGTCCCGGCAGAGAG-AAGGGACCAATAAC  898
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGGAATAAAATGTAATGGTGGTCCCGGCAGAGAGAAAGGGACCAATAAC  900

seq1  AATGAATAAGGTCAGAGTTCT-GGTTGAGGTGAATCCCTGCTCCTCCTTC  947
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  AATGAATAA-GTCAGAGTTCTGGGTTGAGGTGAATCCCTGCTCCTCCTTC  949

seq1  AAGGGAACGGTGCTACAAACATAAGAG-AGATGTACCAACATCCC-TGTT  995
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  AAGGGAACGGTGCTACAAACATAAGAGAAGATGTACCAACATCCCTTGTT  999

seq1  A-TCCAAAGGGTT-CACGGCCAAGTGGGG--AGG-TGTTGCTGACCAGGC  1040
      | ||||||||||| ||||| | |||||||  ||| |||||||||||| ||
seq2  ATTCCAAAGGGTTCCACGG-CTAGTGGGGGAAGGTTGTTGCTGACCA-GC  1047

seq1  AAGGTGCTTCCTTAGTTATTTTAGCAGGGAGCTTAGACTATCTGGTTTGT  1090
      || |||||||| ||||  |||||||||||||| ||||||||||| |    
seq2  AA-GTGCTTCC-TAGTATTTTTAGCAGGGAGC-TAGACTATCTGCT---G  1091

seq1  TGCCTCCTTGGTTACTATTCAGGAAAAATGATTCATACGTC  1131
      ||||||||  | ||||||||| ||||||||| |||||||||
seq2  TGCCTCCT--GGTACTATTCA-GAAAAATGAATCATACGTC  1129


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