BAC Information

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BAC

Clone NameB6Ng01-232L19
Chromosome6 (Build37)
Map Location 50,053,100 - 50,170,741
singlet/doubletdoublet
Overlap geneLOC100041653, LOC624524, Mpp6, Dfna5h
Upstream geneIgf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210, Npy
Downstream geneLOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232L19.bB6Ng01-232L19.g
ACCGA044994GA044995
length1,1541,086
definitionB6Ng01-232L19.b B6Ng01-232L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,053,100 - 50,054,251)(50,169,662 - 50,170,741)
sequence
gaattcctcagagacctgtaaagtgaacatctattcgtataggagacatt
caagtaatgcataaacgaaaacattgagattatataacaaataattaaat
agatcaaattagccagaaatctccctaggacaattgttatgctgtcaatt
acgtttcctccctaagacagagaaaaggttgaatcaaaagggtcgctttc
tctgtacctgccatgctctctgcgtaactgactctaagacagtttgctgt
gtatatgagtaagtggcctcgaatggacaccagtggaagaaaggagccag
gagtgaacagatgtgggcagaacgaactgtcgatgataaagcagccctga
aggacagtctcagctgttactgggtggtggctatgctagtatgggtacaa
gactatctttagtacaatgtgttggcctttaaacattggccacatcctac
tgagtaacagaaactttgaaaaattctggtttggggggagcagcaagcaa
aactgcttgctatgaagccgatcggagttctataaaggtggaaggagaga
agcaactccacaaagttgtcctctgcctccaccacttgtcttggcatgtg
cctgcaagcacacatttgatggtgggggtacacagcacacagggcggggt
aaagtccaatatactgaggatcctggcttcagtccccaacacttcaaaaa
aaaaaaacctaaaattatttttattattctttaaaattactcattttatt
tctttttgtttttgaaaagaacagtttagaaaaatttgcactttggtatc
atccgtgtagttctactgcaccatcaaaacccaagtgactatacctagat
tctccatccctaaaatacatgcacaggaataagtgtgcagatcgtgatga
tgattctgagttaaataacatgttacagagagccctgtcattgtgtgact
tgtactatatttcattccagttgagttggcctgagatttacaagcactct
gcatttgcaatggtgagactcagagggtttcccagcacgtctcccacact
gccttgggctagactgttgcaagtgaattctaacttcctcgacctttcac
ttctcactgtaaacatgcagtataatgaatgtcagtgggacaaacaggct
gttc
gaattcagagttgccagtggcagtagggatatacccctctgaaagctcta
gagaacccttgttgcctgcagtttctggtggctcttggcattctgtggct
ggtggcttatctcggtcatgtcttccctagcctgttgggtcttctctaga
cacagaactcattactgatcaccattactggatatagacttctcttactt
gagactctcaccttaattacacctgcaaagactcattgcacataaggctt
cattctgagactgcaggtgggcatggattcagctcacagtgaaggggctg
tgtggcagagcctgtcaacctgtcccatttagaacacagacaaggaggtg
tttattgatttgttttacaacagccagattttgagggacatgccagctgc
tcaccctccatcagctcagattttttttgtagttaatgaggctgagactt
tgacaattttcttttcattgtgactttgtttttagttttccttctttcca
tactgctcaaatgctttaggtgtccagaaaaaacactcacatcatcttcc
cacttgaaatgaaattgcgagagcctagcaaccagggacaggattacact
tgtccagaggttctagtttgccttctggaggatgcagggcttgacccaag
aaagaacgcagatgtttctgaattccatgacttttacttcctaaaatggc
cccttcctagagggaaatgtcaggttagtcccttatggagagagtagtat
ctgcctgctgatgagtgtccgagaaaacaccaggtacctagggcatggaa
ctagtgcaggggctcagaactggctcatgggcagtgccatcccacccctg
agcaaccttgtgatggataaagctgcctaggggaaggctggggatatact
aggttaagcgtgctgtttttagagtgcgagaaccaggaagggatgtgctt
ttatgaacccctttgacagtttgatatgtagcccaattgttcctagtatc
tggtaaaactcatatcctgccatagttctggacgttctgtctgcctgacc
actttctgctcctgacttcttctcctttccaatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_50053100_50054251
seq2: B6Ng01-232L19.b_45_1198

seq1  GAATTCCTCAGAGACCTGTAAAGTGAACATCTATTCGTATAGGAGACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGAGACCTGTAAAGTGAACATCTATTCGTATAGGAGACATT  50

seq1  CAAGTAATGCATAAACGAAAACATTGAGATTATATAACAAATAATTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATGCATAAACGAAAACATTGAGATTATATAACAAATAATTAAAT  100

seq1  AGATCAAATTAGCCAGAAATCTCCCTAGGACAATTGTTATGCTGTCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAATTAGCCAGAAATCTCCCTAGGACAATTGTTATGCTGTCAATT  150

seq1  ACGTTTCCTCCCTAAGACAGAGAAAAGGTTGAATCAAAAGGGTCGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCCTCCCTAAGACAGAGAAAAGGTTGAATCAAAAGGGTCGCTTTC  200

seq1  TCTGTACCTGCCATGCTCTCTGCGTAACTGACTCTAAGACAGTTTGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCTGCCATGCTCTCTGCGTAACTGACTCTAAGACAGTTTGCTGT  250

seq1  GTATATGAGTAAGTGGCCTCGAATGGACACCAGTGGAAGAAAGGAGCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGAGTAAGTGGCCTCGAATGGACACCAGTGGAAGAAAGGAGCCAG  300

seq1  GAGTGAACAGATGTGGGCAGAACGAACTGTCGATGATAAAGCAGCCCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAACAGATGTGGGCAGAACGAACTGTCGATGATAAAGCAGCCCTGA  350

seq1  AGGACAGTCTCAGCTGTTACTGGGTGGTGGCTATGCTAGTATGGGTACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTCTCAGCTGTTACTGGGTGGTGGCTATGCTAGTATGGGTACAA  400

seq1  GACTATCTTTAGTACAATGTGTTGGCCTTTAAACATTGGCCACATCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCTTTAGTACAATGTGTTGGCCTTTAAACATTGGCCACATCCTAC  450

seq1  TGAGTAACAGAAACTTTGAAAAATTCTGGTTTGGGGGGAGCAGCAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAACAGAAACTTTGAAAAATTCTGGTTTGGGGGGAGCAGCAAGCAA  500

seq1  AACTGCTTGCTATGAAGCCGATCGGAGTTCTATAAAGGTGGAAGGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTGCTATGAAGCCGATCGGAGTTCTATAAAGGTGGAAGGAGAGA  550

seq1  AGCAACTCCACAAAGTTGTCCTCTGCCTCCACCACTTGTCTTGGCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTCCACAAAGTTGTCCTCTGCCTCCACCACTTGTCTTGGCATGTG  600

seq1  CCTGCAAGCACACATTTGATGGTGGGGGTACACAGCACACAGGGCGGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGCACACATTTGATGGTGGGGGTACACAGCACACAGGGCGGGGT  650

seq1  AAAGTCCAATATACTGAGGATCCTGGCTTCAGTCCCCAACACTTCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCAATATACTGAGGATCCTGGCTTCAGTCCCCAACACTTCAAAAA  700

seq1  AAAAAAACCTAAAATTATTTTTATTATTCTTTAAAATTACTCATTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCTAAAATTATTTTTATTATTCTTTAAAATTACTCATTTTATT  750

seq1  TCTTTTTGTTTTTGAAAAGAACAGTTTAGAAAAATTTGCACTTTGGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTTTTTGAAAAGAACAGTTTAGAAAAATTTGCACTTTGGTATC  800

seq1  ATCCGTGTAGTTCTACTGCACCATCAAAACCCAAGTGACTATACCTAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTGTAGTTCTACTGCACCATCAAAACCCAAGTGACTATACCTAGAT  850

seq1  TCTCCATCCCTAAAATACATGCACAGG-ATAAGTGTGCAGATCGTGATGA  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTCCATCCCTAAAATACATGCACAGGAATAAGTGTGCAGATCGTGATGA  900

seq1  TGAATCTGAGTTAAATAACATGTTACAGAGAG-CCTGTCATTGTGTGACT  948
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGATTCTGAGTTAAATAACATGTTACAGAGAGCCCTGTCATTGTGTGACT  950

seq1  TGTACTATAATTCATTCCAGTTGAGTTGGCCTGAGATTTACAAAGCACTC  998
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  TGTACTATATTTCATTCCAGTTGAGTTGGCCTGAGATTTAC-AAGCACTC  999

seq1  TGCATTTGCAAT-GTGAGACCCAGAGGGTTTTCCCAGCACCGCCTCCCAC  1047
      |||||||||||| ||||||| ||||||| |||||||||| || |||||||
seq2  TGCATTTGCAATGGTGAGACTCAGAGGG-TTTCCCAGCA-CGTCTCCCAC  1047

seq1  ACTGCCTTGGGCTAGAACCTG-TGCAGGTGAA-TCTAAC-TCCTCGACC-  1093
      ||||||||||||||||  ||| |||| ||||| |||||| ||||||||| 
seq2  ACTGCCTTGGGCTAGA--CTGTTGCAAGTGAATTCTAACTTCCTCGACCT  1095

seq1  TTCACTTCCTCACTGTAAAACAGGAAGTATAATG-ATGTCAGTGGGAC-A  1141
      ||||||| |||||||| ||||| | ||||||||| ||||||||||||| |
seq2  TTCACTT-CTCACTGT-AAACATGCAGTATAATGAATGTCAGTGGGACAA  1143

seq1  ACAGGCTGTTC  1152
      |||||||||||
seq2  ACAGGCTGTTC  1154

seq1: chr6_50169662_50170741
seq2: B6Ng01-232L19.g_69_1154 (reverse)

seq1  CACA-TGGAAAGGGGAAG-AGTCAG--GCAAGAAGT-GTCAGGCAGACAG  45
      |||| |||||||| |||| ||||||  |||  |||| |||||||||||||
seq2  CACATTGGAAAGGAGAAGAAGTCAGGAGCAGAAAGTGGTCAGGCAGACAG  50

seq1  AACCTTCCAG-ACTATGCCAGGATATTGAGTTTTACCAGATACTAGGAAC  94
      || | ||||| |||||| ||||||| ||||||||||||||||||||||||
seq2  AA-CGTCCAGAACTATGGCAGGATA-TGAGTTTTACCAGATACTAGGAAC  98

seq1  AATT-GGCTACATATCAAACTGTCAAAGGGG-TCATAAAAGCAACATCCC  142
      |||| |||||||||||||||||||||||||| |||||||||| |||||||
seq2  AATTGGGCTACATATCAAACTGTCAAAGGGGTTCATAAAAGC-ACATCCC  147

seq1  TTCCTGGTTCTCGCACTCTAAAAACAGCACGCTTAACCTAGTATATCCCC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTCTCGCACTCTAAAAACAGCACGCTTAACCTAGTATATCCCC  197

seq1  AGCC-TCCCCTAGGCAGCTTTATCCATCACAAGGTTGCTCAGGGGTGGGA  241
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCCCTAGGCAGCTTTATCCATCACAAGGTTGCTCAGGGGTGGGA  247

seq1  TGGCACTGCCCATGAGCCAGTTCTGAGCCCCTGCACTAGTTCCATGCCCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGCCCATGAGCCAGTTCTGAGCCCCTGCACTAGTTCCATGCCCT  297

seq1  AGGTACCTGGTGTTTTCTCGGACACTCATCAGCAGGCAGATACTACTCTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCTGGTGTTTTCTCGGACACTCATCAGCAGGCAGATACTACTCTC  347

seq1  TCCATAAGGGACTAACCTGACATTTCCCTCTAGGAAGGGGCCATTTTAGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGGGACTAACCTGACATTTCCCTCTAGGAAGGGGCCATTTTAGG  397

seq1  AAGTAAAAGTCATGGAATTCAGAAACATCTGCGTTCTTTCTTGGGTCAAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAGTCATGGAATTCAGAAACATCTGCGTTCTTTCTTGGGTCAAG  447

seq1  CCCTGCATCCTCCAGAAGGCAAACTAGAACCTCTGGACAACTGTAATCCT  491
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCTGCATCCTCCAGAAGGCAAACTAGAACCTCTGGACAAGTGTAATCCT  497

seq1  GTCCCTGGTTGCTAGGCTCTCGCAATTTCATTTCAAGTGGGAAGATGATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGGTTGCTAGGCTCTCGCAATTTCATTTCAAGTGGGAAGATGATG  547

seq1  TGAGTGTTTTTTCTGGACACCTAAAGCATTTGAGCAGTATGGAAAGAAGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTTTTCTGGACACCTAAAGCATTTGAGCAGTATGGAAAGAAGG  597

seq1  AAAACTAAAAACAAAGTCACAATGAAAAGAAAATTGTCAAAGTCTCAGCC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAAACAAAGTCACAATGAAAAGAAAATTGTCAAAGTCTCAGCC  647

seq1  TCATTAACTACAAAAAAAATCTGAGCTGATGGAGGGTGAGCAGCTGGCAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACTACAAAAAAAATCTGAGCTGATGGAGGGTGAGCAGCTGGCAT  697

seq1  GTCCCTCAAAATCTGGCTGTTGTAAAACAAATCAATAAACACCTCCTTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCAAAATCTGGCTGTTGTAAAACAAATCAATAAACACCTCCTTGT  747

seq1  CTGTGTTCTAAATGGGACAGGTTGACAGGCTCTGCCACACAGCCCCTTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCTAAATGGGACAGGTTGACAGGCTCTGCCACACAGCCCCTTCA  797

seq1  CTGTGAGCTGAATCCATGCCCACCTGCAGTCTCAGAATGAAGCCTTATGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGCTGAATCCATGCCCACCTGCAGTCTCAGAATGAAGCCTTATGT  847

seq1  GCAATGAGTCTTTGCAGGTGTAATTAAGGTGAGAGTCTCAAGTAAGAGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAGTCTTTGCAGGTGTAATTAAGGTGAGAGTCTCAAGTAAGAGAA  897

seq1  GTCTATATCCAGTAATGGTGATCAGTAATGAGTTCTGTGTCTAGAGAAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATATCCAGTAATGGTGATCAGTAATGAGTTCTGTGTCTAGAGAAGA  947

seq1  CCCAACAGGCTAGGGAAGACATGACCGAGATAAGCCACCAGCCACAGAAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGGCTAGGGAAGACATGACCGAGATAAGCCACCAGCCACAGAAT  997

seq1  GCCAAGAGCCACCAGAAACTGCAGGCAACAAGGGTTCTCTAGAGCTTTCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGAGCCACCAGAAACTGCAGGCAACAAGGGTTCTCTAGAGCTTTCA  1047

seq1  GAGGGGTATATCCCTACTGCCACTGGCAACTCTGAATTC  1080
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTATATCCCTACTGCCACTGGCAACTCTGAATTC  1086