BAC Information

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BAC

Clone NameB6Ng01-232N21
Chromosome6 (Build37)
Map Location 108,106,192 - 108,107,142
singlet/doubletsinglet
Overlap geneSumf1
Upstream geneLrrn1, Setmar, LOC100043718
Downstream geneItpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232N21.bB6Ng01-232N21.g
ACCGA045094GA045095
length1,124958
definitionB6Ng01-232N21.b B6Ng01-232N21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatgttaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagtgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaagaaccaactcctcgtttggttaatttctttga
tagttcttcttgtttccacttgggttgatttcacccctgagtttgattat
tttctggcgtctactcctcttgggtgaatgtgcttccttttttttctaga
gcttttagatgtgttgtcaagctgctagtaatgtgctctctcccgtttct
tcatggagcactcagaagctatgagttttcctctagaaattgcttttcat
tgtggtcccaaacggtttggtacgttgtggcttcatttttcaatttaact
tcttaaaagtcttaactttcttccttcatttccatccctttgacccaggg
atcatggaaaagaatgtttggctc
gaattcagtgaaatgctggggacagtgaaaggagcggtgagccgctgctg
cagcagcccttgggtctcctctgcagagctcagctttgtgggtgttctcc
tctgaaggcttgcggagctggaggagcttcctcctttttttttctttaga
tattttctttatttacatttcaaatgttatctactttcctggtttccctt
ctgaaaacctcctccccctatcccttccccatcccgctgctcacgaaccc
acccatttgcacttcctggccctggcattcccctatactggggcatagag
ccttcacaggaccaaaggcctcgcgtctggcatttgttgtctcctctaaa
gactggcatatggataactgaagtctttcacaatgtagagtgagtaggca
tggacatcacccaaagctacaagctctttgaagaagattcagcctgctgt
ttattacggttccaaactagaaatgtctaaatgcgcattagtgggcagaa
tggatacaaacagattgtctatttgttttcattgctaaacgtggaagaaa
tatttcaaaatacaaaatatcatgagagaacaaaaaagaacgaaggcggt
ccagtatctaccatccagatttaatgtattttgtttttttcttttttaat
ttaagagctagaatcttccatcgatagcgctttgtgctgggagtggagtg
gagtgggcaggtggagtcatggtttattttgctgcaatccagaagtggga
tgacttgagctttctcaagtcatcttccttgacaccgggcaaattacctg
tcattggcaccaaacagaacaaaccagattatcctgttagattgaagggt
atgctcacagttcctgcgtgctgtgaaatctaatgctcttgcagtcggtt
catggtgaaggaacaaaatgccttttctaattgaagtgtttaaaccaaaa
gtcttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108106192_108107142
seq2: B6Ng01-232N21.g_67_1024 (reverse)

seq1  AAAAAGACTTTTGGTTTAAACACTTCAA-TAGAAAAGGCATTTTG-TCCT  48
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AAAAAGACTTTTGGTTTAAACACTTCAATTAGAAAAGGCATTTTGTTCCT  50

seq1  TCACCATG-ACCGACTGCAAG-GCATTAGATTTCACAGCACGCAGGAACT  96
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TCACCATGAACCGACTGCAAGAGCATTAGATTTCACAGCACGCAGGAACT  100

seq1  GTGAGCATACCCTTC-ATCTA--CGGCTAATCTGGTTTGTTCTGTTTGGT  143
      ||||||||||||||| |||||   || |||||||||||||||||||||||
seq2  GTGAGCATACCCTTCAATCTAACAGGATAATCTGGTTTGTTCTGTTTGGT  150

seq1  GCCAATGACAGGTAATTTGCCCGGTGTCAAGGGAAGATGACTTGAGAAAG  193
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCAATGACAGGTAATTTGCCCGGTGTCAA-GGAAGATGACTTGAGAAAG  199

seq1  CTCAAGTCATCCCACTTCTGGATTGCAGCAAAAT-AACCATGACTCCACC  242
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCAAGTCATCCCACTTCTGGATTGCAGCAAAATAAACCATGACTCCACC  249

seq1  TGCCCACTCCACTCCACTCCCAGCACAAAGCGCTATCGATGGAAGATTCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACTCCACTCCACTCCCAGCACAAAGCGCTATCGATGGAAGATTCT  299

seq1  AGCTCTTAAATTAAAAAAGAAAAAAACAAAATACATTAAATCTGGATGGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTAAATTAAAAAAGAAAAAAACAAAATACATTAAATCTGGATGGT  349

seq1  AGATACTGGACCGCCTTCGTTCTTTTTTGTTCTCTCATGATATTTTGTAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTGGACCGCCTTCGTTCTTTTTTGTTCTCTCATGATATTTTGTAT  399

seq1  TTTGAAATATTTCTTCCACGTTTAGCAATGAAAACAAATAGACAATCTGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATATTTCTTCCACGTTTAGCAATGAAAACAAATAGACAATCTGT  449

seq1  TTGTATCCATTCTGCCCACTAATGCGCATTTAGACATTTCTAGTTTGGAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCCATTCTGCCCACTAATGCGCATTTAGACATTTCTAGTTTGGAA  499

seq1  CCGTAATAAACAGCAGGCTGAATCTTCTTCAAAGAGCTTGTAGCTTTGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAATAAACAGCAGGCTGAATCTTCTTCAAAGAGCTTGTAGCTTTGGG  549

seq1  TGATGTCCATGCCTACTCACTCTACATTGTGAAAGACTTCAGTTATCCAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCATGCCTACTCACTCTACATTGTGAAAGACTTCAGTTATCCAT  599

seq1  ATGCCAGTCTTTAGAGGAGACAACAAATGCCAGACGCGAGGCCTTTGGTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTCTTTAGAGGAGACAACAAATGCCAGACGCGAGGCCTTTGGTC  649

seq1  CTGTGAAGGCTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGGCTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGGAAGTG  699

seq1  CAAATGGGTGGGTTCGTGAGCAGCGGGATGGGGAAGGGATAGGGGGAGGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGGTGGGTTCGTGAGCAGCGGGATGGGGAAGGGATAGGGGGAGGA  749

seq1  GGTTTTCAGAAGGGAAACCAGGAAAGTAGATAACATTTGAAATGTAAATA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAGAAGGGAAACCAGGAAAGTAGATAACATTTGAAATGTAAATA  799

seq1  AAGAAAATATCTAAAGAAAAAAAAAGGAGGAAGCTCCTCCAGCTCCGCAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATATCTAAAGAAAAAAAAAGGAGGAAGCTCCTCCAGCTCCGCAA  849

seq1  GCCTTCAGAGGAGAACACCCACAAAGCTGAGCTCTGCAGAGGAGACCCAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCAGAGGAGAACACCCACAAAGCTGAGCTCTGCAGAGGAGACCCAA  899

seq1  GGGCTGCTGCAGCAGCGGCTCACCGCTCCTTTCACTGTCCCCAGCATTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTGCAGCAGCGGCTCACCGCTCCTTTCACTGTCCCCAGCATTTC  949

seq1  ACTGAATTC  951
      |||||||||
seq2  ACTGAATTC  958