BAC Information

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BAC

Clone NameB6Ng01-233D03
Chromosome6 (Build37)
Map Location 132,008,068 - 132,009,265
singlet/doubletsinglet
Overlap geneLOC639802
Upstream geneLOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758, 5430401F13Rik, LOC625781, Tas2r130, Tas2r107, Tas2r106, Tas2r104, Tas2r105, Tas2r114
Downstream geneEG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116, Tas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233D03.bB6Ng01-233D03.g
ACCGA045328GA045329
length1,2021,197
definitionB6Ng01-233D03.b B6Ng01-233D03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgatcctatctcccctagatccctaacctcagaaagatttctgg
ccttacaacaagtagaaaaagctattaaagaggaatttgtcatttatata
gattactctttaccgttacagctgttaatttttaaatatgattcatgtgc
cttcaagattgttatggtaaaagtctcctctaatgtagatacattcaagg
atttctcctaaacacaatatcttgccgtattatgaaacagtagctcagat
gattatcattggaaggaagtaggcactaacttattttggcaaagagccag
atattatttttcagccttacaacgtaagtgaagacacttggctgagacag
catagtacagattggttgcttgctcaaatagggtttaacataactatata
cagccactaccttcaagataggttaataacatttttaaatgtacatgagt
tgatatttcctaaaatgacttccttacagcctttatataatgctctattg
atttttactgatggctcctctaaagggcgagcaggatttcttattaataa
tcaacaggctaaagactcctggtctctcaactcaattagcagaattaaca
gtaatactgaatgtctttcagtctgtgcatgaagcttttaatatttttac
tgatagtttatatgttgcacaatcggtacccttattggagacctgtggta
cttttaactttaatatgccagcaggatccctgttttcacaattgcaaaac
atcattcttgcccaaaaacacatgttttatattggccacatatgagccca
ttctggtcttcctggaccgttagctgaaggcaatggttgcattgacagag
ctctaatgggagaagccttaatttcagatcctgttgctttggccaaacgt
gatcatgaaaactttcatttctctagccagatcttagactccgacttaag
atcactaagagcaggcaagatgattgtaaaacatatcctaatgtatacat
tatctccagtgccacatgcctataatatttggcaaatgatgtaactcatt
atgcagatttggaaataaaatatatacatgtttgtatgatactgttcaag
atttctttggcttcctggattactggagaagcctcaaaaatgtagttgat
catggctacagcttaatgccatggggatcgccctaatccttattaaagaa
cc
gaattccagaaggcttacctgggcacaaataagctgccaggcttgtttgt
ctcacttactatgtattccatcttggtgtcctaatcacccgcagaaatga
acagaaagtcaaccaaagggtatgattattggcaaaaatatacttgtttg
cataggagaaaatccttccaggaccacaaataacaaggagagagtcacaa
tcataacgaactagaatttcaattctaatatctgaaatttcactatattg
cacacattgttgcacaaatatcatgccctgtgatttagaactgaattctt
tctttttcattttttattagaacttttcttcatttacatttcaaatgcta
tcctgaaaatcccctatactctccccactgccctacttctctacccaaac
actcccaatttttgatcctgctgttcccctctactggggcatataaattt
tgcaatgtcaaaaggcttttcttctgaatgatggccaactaggccatctg
agaacctatgcagtcccaggcaaatacaaaagtggatgctcacagtcacc
tattggatggaacacagggcaccaatggaggagctagagaaagtacaaag
gagctgaaggggtctgcaacccaataggtggaacaacaatatgaactaac
cagtaacctcagagaccatgtctctagaactgaattcttgacagcctcag
ccctactgcatcctgctaggttagagtcccaaagaagagtcagggatgca
tgtcatgctgctgtcactagtgtgttcaacagtaaggaagtgaaatatca
ctttgttctatcttccttataaagactgtggccttccttcctccagcaca
aacttgggagtaatcatccaagatgctggtcgtcctgctcacagcagtgt
tgttggtactgagctcagctcagagacaagatgaaaggtttgaagtatgg
gagagagtggtacagtgatattggactgcagttacacatttcatgacagg
agaaatgaagagactgaaagggaaagagacaaaaaaatatggagaacaaa
tagagacatttgttttcattttacttctagagctaaactcgactctgtat
gaattacaaatatttcttgcaacaaaataaccttcaagttaaattataaa
agaccttttttgggttgggttagaaagatgcacgaaagtatggttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_132008068_132009265
seq2: B6Ng01-233D03.g_63_1259 (reverse)

seq1  ACAA-CATACTTTCGTGCATC-TTCT-ACCACACACAAAAAAGTCTTTTT  47
      |||| |||||||||||||||| |||| |||  || ||||||||   ||||
seq2  ACAACCATACTTTCGTGCATCTTTCTAACCCAACCCAAAAAAGGTCTTTT  50

seq1  ATAAATTTACT--GAGGTTATTTTGTTGCAAG-AATATTTGTAATTCATA  94
      |||| || |||   |||||||||||||||||| |||||||||||||||||
seq2  ATAATTTAACTTGAAGGTTATTTTGTTGCAAGAAATATTTGTAATTCATA  100

seq1  CCAGAAGTCGAGTTTAAGCTCTAGAAGTAAAATGAAAACAAATGTTCTTC  144
       ||| |||||||||| |||||||||||||||||||||||||||||   ||
seq2  -CAG-AGTCGAGTTT-AGCTCTAGAAGTAAAATGAAAACAAATGT--CTC  145

seq1  TATTTGTTCT-CATATTTTTTTGTCTCTGTCCCTTTTCAGTCTCCTTTCA  193
      |||||||||| ||||||||||||||||| |||| ||||||||||  ||||
seq2  TATTTGTTCTCCATATTTTTTTGTCTCTTTCCC-TTTCAGTCTC--TTCA  192

seq1  TTTCTCCCTGTCATGAAATGTGTAACTGCAGTCCAATATCACTGTACCAC  243
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCT-CCTGTCATGAAATGTGTAACTGCAGTCCAATATCACTGTACCAC  241

seq1  TCTCTCCCATACTTCAAACC-TTCATCTTGTCTCTGAGCTGAGCTCAGTA  292
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTCTCCCATACTTCAAACCTTTCATCTTGTCTCTGAGCTGAGCTCAGTA  291

seq1  CCAACAACACTGCTGTGAGCAGGACGACCAGCATCTTGGATGATTACTCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACACTGCTGTGAGCAGGACGACCAGCATCTTGGATGATTACTCC  341

seq1  CAAGTTTGTGCTGGAGGAAGGAAGGCCACAGTCTTTATAAGGAAGATAGA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGTGCTGGAGGAAGGAAGGCCACAGTCTTTATAAGGAAGATAGA  391

seq1  ACAAAGTGATATTTCACTTCCTTACTGTTGAACACACTAGTGACAGCAGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGATATTTCACTTCCTTACTGTTGAACACACTAGTGACAGCAGC  441

seq1  ATGACATGCATCCCTGACTCTTCTTTGGGACTCTAACCTAGCAGGATGCA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGCATCCCTGACTCTTCTTTGGGACTCTAACCTAGCAGGATGCA  491

seq1  GTAGGGCTGAGGCTGTCAAGAATTCAGTTCTAGAGACATGGTCTCTGAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGCTGAGGCTGTCAAGAATTCAGTTCTAGAGACATGGTCTCTGAGG  541

seq1  TTACTGGTTAGTTCATATTGTTGTTCCACCTATTGGGTTGCAGACCCCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGTTAGTTCATATTGTTGTTCCACCTATTGGGTTGCAGACCCCTT  591

seq1  CAGCTCCTTTGTACTTTCTCTAGCTCCTCCATTGGTGCCCTGTGTTCCAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTTTGTACTTTCTCTAGCTCCTCCATTGGTGCCCTGTGTTCCAT  641

seq1  CCAATAGGTGACTGTGAGCATCCACTTTTGTATTTGCCTGGGACTGCATA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAGGTGACTGTGAGCATCCACTTTTGTATTTGCCTGGGACTGCATA  691

seq1  GGTTCTCAGATGGCCTAGTTGGCCATCATTCAGAAGAAAAGCCTTTTGAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAGATGGCCTAGTTGGCCATCATTCAGAAGAAAAGCCTTTTGAC  741

seq1  ATTGCAAAATTTATATGCCCCAGTAGAGGGGAACAGCAGGATCAAAAATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAAATTTATATGCCCCAGTAGAGGGGAACAGCAGGATCAAAAATT  791

seq1  GGGAGTGTTTGGGTAGAGAAGTAGGGCAGTGGGGAGAGTATAGGGGATTT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGTTTGGGTAGAGAAGTAGGGCAGTGGGGAGAGTATAGGGGATTT  841

seq1  TCAGGATAGCATTTGAAATGTAAATGAAGAAAAGTTCTAATAAAAAATGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGCATTTGAAATGTAAATGAAGAAAAGTTCTAATAAAAAATGA  891

seq1  AAAAGAAAGAATTCAGTTCTAAATCACAGGGCATGATATTTGTGCAACAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGAATTCAGTTCTAAATCACAGGGCATGATATTTGTGCAACAA  941

seq1  TGTGTGCAATATAGTGAAATTTCAGATATTAGAATTGAAATTCTAGTTCG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCAATATAGTGAAATTTCAGATATTAGAATTGAAATTCTAGTTCG  991

seq1  TTATGATTGTGACTCTCTCCTTGTTATTTGTGGTCCTGGAAGGATTTTCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTGTGACTCTCTCCTTGTTATTTGTGGTCCTGGAAGGATTTTCT  1041

seq1  CCTATGCAAACAAGTATATTTTTGCCAATAATCATACCCTTTGGTTGACT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCAAACAAGTATATTTTTGCCAATAATCATACCCTTTGGTTGACT  1091

seq1  TTCTGTTCATTTCTGCGGGTGATTAGGACACCAAGATGGAATACATAGTA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCATTTCTGCGGGTGATTAGGACACCAAGATGGAATACATAGTA  1141

seq1  AGTGAGACAAACAAGCCTGGCAGCTTATTTGTGCCCAGGTAAGCCTTCTG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACAAACAAGCCTGGCAGCTTATTTGTGCCCAGGTAAGCCTTCTG  1191

seq1  GAATTC  1198
      ||||||
seq2  GAATTC  1197